HEADER TRANSFERASE 21-MAY-21 7MYS TITLE CRYSTAL STRUCTURE OF A TRNA (GUANINE-N1)-METHYLTRANSFERASE FROM TITLE 2 ACINETOBACTER BAUMANNII AB5075-UW BOUND TO S-ADENOSYL HOMOCYSTEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: TRMD, ABC003_01337, ABUW_0322, EA686_14030, FDO31_01140, SOURCE 5 FJU79_00125, GNY86_14875, HYI42_11650; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIH, STRUCTURAL GENOMICS, SAH, SAM, TRMD, OPPORTUNISTIC PATHOGEN, KEYWDS 2 TRNA BIOGENESIS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 3 DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 18-OCT-23 7MYS 1 REMARK REVDAT 1 09-JUN-21 7MYS 0 JRNL AUTH T.E.EDWARDS,J.ABENDROTH,P.S.HORANYI,D.D.LORIMER, JRNL AUTH 2 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL TITL CRYSTAL STRUCTURE OF A TRNA (GUANINE-N1)-METHYLTRANSFERASE JRNL TITL 2 FROM ACINETOBACTER BAUMANNII AB5075-UW BOUND TO S-ADENOSYL JRNL TITL 3 HOMOCYSTEINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV-4224-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.290 REMARK 3 FREE R VALUE TEST SET COUNT : 2057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6400 - 5.9200 1.00 1333 158 0.1460 0.2006 REMARK 3 2 5.9100 - 4.7000 1.00 1350 143 0.1661 0.1915 REMARK 3 3 4.7000 - 4.1000 1.00 1350 124 0.1456 0.1595 REMARK 3 4 4.1000 - 3.7300 1.00 1359 122 0.1623 0.2293 REMARK 3 5 3.7300 - 3.4600 1.00 1350 123 0.1851 0.2245 REMARK 3 6 3.4600 - 3.2600 1.00 1358 125 0.1972 0.2413 REMARK 3 7 3.2600 - 3.0900 1.00 1317 146 0.2048 0.2607 REMARK 3 8 3.0900 - 2.9600 1.00 1345 126 0.2266 0.2766 REMARK 3 9 2.9600 - 2.8500 1.00 1374 106 0.2554 0.3257 REMARK 3 10 2.8500 - 2.7500 1.00 1307 138 0.2357 0.2820 REMARK 3 11 2.7500 - 2.6600 1.00 1369 137 0.2225 0.2699 REMARK 3 12 2.6600 - 2.5900 1.00 1311 153 0.2251 0.2681 REMARK 3 13 2.5900 - 2.5200 1.00 1331 135 0.2334 0.2932 REMARK 3 14 2.5200 - 2.4600 1.00 1299 140 0.2486 0.2797 REMARK 3 15 2.4600 - 2.4000 1.00 1322 181 0.2671 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1229 -4.0053 7.4768 REMARK 3 T TENSOR REMARK 3 T11: 0.5172 T22: 0.5291 REMARK 3 T33: 0.4209 T12: 0.1718 REMARK 3 T13: 0.0290 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 4.6512 L22: 2.1536 REMARK 3 L33: 3.9867 L12: 1.3074 REMARK 3 L13: 1.6103 L23: 0.2299 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.2874 S13: -0.2090 REMARK 3 S21: 0.1164 S22: 0.0453 S23: -0.5343 REMARK 3 S31: 0.4204 S32: 0.4867 S33: -0.0488 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3283 4.5550 7.7742 REMARK 3 T TENSOR REMARK 3 T11: 0.3973 T22: 0.4117 REMARK 3 T33: 0.3461 T12: 0.1134 REMARK 3 T13: 0.0049 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.4925 L22: 2.1646 REMARK 3 L33: 3.0245 L12: 1.3422 REMARK 3 L13: -0.5552 L23: -0.3024 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.2570 S13: 0.1518 REMARK 3 S21: 0.1279 S22: -0.0368 S23: -0.0220 REMARK 3 S31: 0.1369 S32: 0.1062 S33: 0.0364 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0407 25.3130 7.6888 REMARK 3 T TENSOR REMARK 3 T11: 0.7685 T22: 0.8082 REMARK 3 T33: 0.8820 T12: 0.0042 REMARK 3 T13: -0.0429 T23: -0.2427 REMARK 3 L TENSOR REMARK 3 L11: 3.8412 L22: 6.2523 REMARK 3 L33: 3.7218 L12: 3.1361 REMARK 3 L13: -1.4409 L23: -1.9357 REMARK 3 S TENSOR REMARK 3 S11: -0.0174 S12: -0.6348 S13: 0.8198 REMARK 3 S21: 0.7904 S22: 0.0725 S23: -0.3627 REMARK 3 S31: -0.6383 S32: 0.9593 S33: -0.1278 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.4270 33.5545 0.5268 REMARK 3 T TENSOR REMARK 3 T11: 0.7995 T22: 1.2221 REMARK 3 T33: 1.6864 T12: -0.4877 REMARK 3 T13: 0.2711 T23: -0.3185 REMARK 3 L TENSOR REMARK 3 L11: 0.2921 L22: 0.4067 REMARK 3 L33: 1.1676 L12: -0.3633 REMARK 3 L13: 0.0889 L23: -0.2791 REMARK 3 S TENSOR REMARK 3 S11: -0.2852 S12: 0.1786 S13: 0.3293 REMARK 3 S21: -0.0407 S22: -1.0818 S23: 0.9672 REMARK 3 S31: -0.0359 S32: 1.1831 S33: 1.4219 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5855 37.5287 2.1300 REMARK 3 T TENSOR REMARK 3 T11: 1.0198 T22: 0.5224 REMARK 3 T33: 1.0610 T12: -0.1270 REMARK 3 T13: 0.0000 T23: -0.1849 REMARK 3 L TENSOR REMARK 3 L11: 1.0021 L22: 5.5786 REMARK 3 L33: 5.5238 L12: -2.4993 REMARK 3 L13: -1.0133 L23: 3.6624 REMARK 3 S TENSOR REMARK 3 S11: -0.4436 S12: 0.0502 S13: 0.7343 REMARK 3 S21: -0.6192 S22: 0.6547 S23: -0.4762 REMARK 3 S31: -1.7056 S32: 0.5993 S33: -0.3294 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8817 11.7574 -5.9795 REMARK 3 T TENSOR REMARK 3 T11: 0.3449 T22: 0.6849 REMARK 3 T33: 0.5079 T12: 0.0802 REMARK 3 T13: 0.0308 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.0626 L22: 4.4795 REMARK 3 L33: 3.1663 L12: 0.4447 REMARK 3 L13: -1.2582 L23: -0.5073 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: -0.1456 S13: 0.0397 REMARK 3 S21: -0.2248 S22: -0.0452 S23: -0.7127 REMARK 3 S31: 0.2143 S32: 0.9589 S33: 0.0048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1345 3.1822 -13.2431 REMARK 3 T TENSOR REMARK 3 T11: 0.7523 T22: 0.8418 REMARK 3 T33: 0.6560 T12: -0.1066 REMARK 3 T13: -0.0479 T23: -0.1224 REMARK 3 L TENSOR REMARK 3 L11: 1.2420 L22: 1.3085 REMARK 3 L33: 5.2088 L12: 1.2960 REMARK 3 L13: -0.5119 L23: -1.0303 REMARK 3 S TENSOR REMARK 3 S11: -0.2538 S12: 1.1736 S13: -0.2496 REMARK 3 S21: -0.8457 S22: 0.8074 S23: -0.3563 REMARK 3 S31: 0.2067 S32: 0.2602 S33: -0.5559 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 184 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9214 2.5608 -10.6260 REMARK 3 T TENSOR REMARK 3 T11: 0.4105 T22: 0.4577 REMARK 3 T33: 0.3917 T12: 0.0513 REMARK 3 T13: 0.0376 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 3.5306 L22: 6.2224 REMARK 3 L33: 3.6860 L12: 2.8284 REMARK 3 L13: 2.4798 L23: 0.5150 REMARK 3 S TENSOR REMARK 3 S11: -0.3016 S12: 0.2018 S13: 0.3890 REMARK 3 S21: -0.4881 S22: 0.1584 S23: 0.7453 REMARK 3 S31: -0.1498 S32: -0.1269 S33: 0.1544 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 0 THROUGH 23 OR REMARK 3 (RESID 24 THROUGH 27 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 28 OR (RESID 29 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 30 THROUGH 31 OR (RESID 32 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 33 THROUGH 42 OR REMARK 3 (RESID 43 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR (RESID 47 REMARK 3 THROUGH 48 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 49 REMARK 3 THROUGH 50 OR (RESID 51 THROUGH 52 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 53 OR (RESID 54 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 55 THROUGH 68 OR REMARK 3 (RESID 69 THROUGH 70 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 71 THROUGH 75 OR (RESID 76 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 77 THROUGH 104 OR REMARK 3 (RESID 105 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 106 REMARK 3 THROUGH 161 OR (RESID 162 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 163 THROUGH 237 OR (RESID 238 REMARK 3 THROUGH 239 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 240 THROUGH 301)) REMARK 3 SELECTION : (CHAIN B AND (RESID 0 THROUGH 103 OR REMARK 3 (RESID 104 THROUGH 105 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 106 THROUGH 163 OR RESID 170 REMARK 3 THROUGH 186 OR (RESID 187 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 188 OR (RESID 189 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 190 THROUGH 198 OR (RESID 199 REMARK 3 THROUGH 202 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 203 THROUGH 204 OR (RESID 205 THROUGH 210 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 211 OR (RESID REMARK 3 212 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 213 OR REMARK 3 (RESID 214 THROUGH 215 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 216 THROUGH 235 OR (RESID 236 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 237 THROUGH 243 REMARK 3 OR (RESID 244 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 301)) REMARK 3 ATOM PAIRS NUMBER : 2110 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22187 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.328 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.39 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1UAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ACBAC.00054.A.B1.PW38905 AT 26 MG/ML REMARK 280 WITH 6 MM GMP AND 6 MM SAH AGAINST MORPHEUS CONDITION F2 WITH 10% REMARK 280 PEG 8000, 20% ETHYLENE GLYCOL, 0.1 M MES/IMIDAZOLE PH 6.5, 0.02 REMARK 280 M EACH GLUCOSE, MANNOSE, GALACTOSE, FUCOSE, XYLOSE, ACETYL- REMARK 280 GLUCOSAMINE, DIRECT CRYO, UNIQUE PUCK ID OKJ1-10, CRYSTAL REMARK 280 TRACKING ID 319640F2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.29500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.14750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.44250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MET A 164 REMARK 465 SER A 165 REMARK 465 ASP A 166 REMARK 465 GLU A 167 REMARK 465 GLN A 168 REMARK 465 SER A 169 REMARK 465 GLN A 245 REMARK 465 GLY A 246 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 44 REMARK 465 ASN B 45 REMARK 465 TYR B 46 REMARK 465 MET B 164 REMARK 465 SER B 165 REMARK 465 ASP B 166 REMARK 465 GLU B 167 REMARK 465 GLY B 246 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 TYR A 46 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 GLN A 104 CG CD OE1 NE2 REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 VAL A 176 CG1 CG2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 ILE A 199 CG1 CG2 CD1 REMARK 470 LEU A 200 CG CD1 CD2 REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 SER A 202 OG REMARK 470 HIS A 205 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 207 CG OD1 ND2 REMARK 470 ILE A 208 CG1 CG2 CD1 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 214 CG CD1 CD2 REMARK 470 GLN A 215 CG CD OE1 NE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLN A 230 CG CD OE1 NE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLN A 236 CG CD OE1 NE2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 ASP B 29 CG OD1 OD2 REMARK 470 GLN B 32 CG CD OE1 NE2 REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 48 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 GLN B 76 CG CD OE1 NE2 REMARK 470 GLN B 101 CG CD OE1 NE2 REMARK 470 GLN B 105 CG CD OE1 NE2 REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 GLN B 168 CG CD OE1 NE2 REMARK 470 ILE B 171 CG1 CG2 CD1 REMARK 470 GLN B 172 CG CD OE1 NE2 REMARK 470 VAL B 176 CG1 CG2 REMARK 470 GLU B 209 CG CD OE1 OE2 REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 GLN B 230 CG CD OE1 NE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 GLN B 245 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 126 CA - CB - CG ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 119 -144.19 62.70 REMARK 500 PHE A 175 -14.55 72.08 REMARK 500 SER A 202 21.13 -159.69 REMARK 500 TYR B 119 -134.89 61.46 REMARK 500 SER B 169 46.33 -103.38 REMARK 500 PHE B 175 -10.89 69.52 REMARK 500 GLU B 244 -69.61 -98.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MYQ RELATED DB: PDB REMARK 900 APO STRUCTURE REMARK 900 RELATED ID: ACBAC.00054.A RELATED DB: TARGETTRACK DBREF1 7MYS A 2 246 UNP A0A0D5YDX5_ACIBA DBREF2 7MYS A A0A0D5YDX5 2 246 DBREF1 7MYS B 2 246 UNP A0A0D5YDX5_ACIBA DBREF2 7MYS B A0A0D5YDX5 2 246 SEQADV 7MYS MET A -7 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS ALA A -6 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS A -5 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS A -4 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS A -3 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS A -2 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS A -1 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS A 0 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS VAL A 1 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS MET B -7 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS ALA B -6 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS B -5 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS B -4 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS B -3 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS B -2 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS B -1 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS HIS B 0 UNP A0A0D5YDX EXPRESSION TAG SEQADV 7MYS VAL B 1 UNP A0A0D5YDX EXPRESSION TAG SEQRES 1 A 254 MET ALA HIS HIS HIS HIS HIS HIS VAL PHE PHE ALA VAL SEQRES 2 A 254 ILE THR LEU PHE PRO GLU MET PHE ASP ALA ILE THR ALA SEQRES 3 A 254 TYR GLY ILE SER GLY ARG ALA ALA LYS ARG ASP ILE VAL SEQRES 4 A 254 GLN VAL THR CYS ILE ASN PRO ARG ASP PHE ALA GLU GLY SEQRES 5 A 254 ASN TYR ARG ARG VAL ASP GLU ARG PRO PHE GLY GLY GLY SEQRES 6 A 254 PRO GLY MET VAL MET MET ALA GLU PRO LEU ALA LYS ALA SEQRES 7 A 254 ILE ASN HIS ALA LYS GLN LEU ALA SER ARG ALA GLY CYS SEQRES 8 A 254 VAL HIS VAL PRO VAL VAL TYR MET SER PRO GLN GLY LYS SEQRES 9 A 254 THR LEU ASN GLU GLN ALA VAL GLN GLN PHE VAL ASP TYR SEQRES 10 A 254 ASP GLY LEU ILE VAL LEU CYS GLY ARG TYR GLU GLY VAL SEQRES 11 A 254 ASP GLU ARG LEU ILE GLN HIS TYR VAL ASP GLN GLU TRP SEQRES 12 A 254 SER ILE GLY ASP TYR VAL LEU SER GLY GLY GLU LEU PRO SEQRES 13 A 254 ALA MET VAL LEU LEU ASP SER ILE ILE ARG ARG LEU PRO SEQRES 14 A 254 ASN VAL MET SER ASP GLU GLN SER ALA ILE GLN ASP SER SEQRES 15 A 254 PHE VAL ASP GLY LEU LEU ASP CYS PRO GLN TYR THR LYS SEQRES 16 A 254 PRO ASP GLN PHE GLU GLY LEU ASP VAL PRO GLU ILE LEU SEQRES 17 A 254 LYS SER GLY HIS HIS ALA ASN ILE GLU LYS TRP ARG PHE SEQRES 18 A 254 LEU GLN ARG TYR GLN ARG THR LEU GLU ARG ARG PRO GLU SEQRES 19 A 254 LEU ILE GLU GLN VAL THR LEU THR LYS GLN GLN LYS LYS SEQRES 20 A 254 TRP LEU SER ASP GLU GLN GLY SEQRES 1 B 254 MET ALA HIS HIS HIS HIS HIS HIS VAL PHE PHE ALA VAL SEQRES 2 B 254 ILE THR LEU PHE PRO GLU MET PHE ASP ALA ILE THR ALA SEQRES 3 B 254 TYR GLY ILE SER GLY ARG ALA ALA LYS ARG ASP ILE VAL SEQRES 4 B 254 GLN VAL THR CYS ILE ASN PRO ARG ASP PHE ALA GLU GLY SEQRES 5 B 254 ASN TYR ARG ARG VAL ASP GLU ARG PRO PHE GLY GLY GLY SEQRES 6 B 254 PRO GLY MET VAL MET MET ALA GLU PRO LEU ALA LYS ALA SEQRES 7 B 254 ILE ASN HIS ALA LYS GLN LEU ALA SER ARG ALA GLY CYS SEQRES 8 B 254 VAL HIS VAL PRO VAL VAL TYR MET SER PRO GLN GLY LYS SEQRES 9 B 254 THR LEU ASN GLU GLN ALA VAL GLN GLN PHE VAL ASP TYR SEQRES 10 B 254 ASP GLY LEU ILE VAL LEU CYS GLY ARG TYR GLU GLY VAL SEQRES 11 B 254 ASP GLU ARG LEU ILE GLN HIS TYR VAL ASP GLN GLU TRP SEQRES 12 B 254 SER ILE GLY ASP TYR VAL LEU SER GLY GLY GLU LEU PRO SEQRES 13 B 254 ALA MET VAL LEU LEU ASP SER ILE ILE ARG ARG LEU PRO SEQRES 14 B 254 ASN VAL MET SER ASP GLU GLN SER ALA ILE GLN ASP SER SEQRES 15 B 254 PHE VAL ASP GLY LEU LEU ASP CYS PRO GLN TYR THR LYS SEQRES 16 B 254 PRO ASP GLN PHE GLU GLY LEU ASP VAL PRO GLU ILE LEU SEQRES 17 B 254 LYS SER GLY HIS HIS ALA ASN ILE GLU LYS TRP ARG PHE SEQRES 18 B 254 LEU GLN ARG TYR GLN ARG THR LEU GLU ARG ARG PRO GLU SEQRES 19 B 254 LEU ILE GLU GLN VAL THR LEU THR LYS GLN GLN LYS LYS SEQRES 20 B 254 TRP LEU SER ASP GLU GLN GLY HET SAH A 301 26 HET SAH B 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 5 HOH *59(H2 O) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 ALA A 18 1 6 HELIX 3 AA3 TYR A 19 ARG A 28 1 10 HELIX 4 AA4 ASN A 37 ALA A 42 5 6 HELIX 5 AA5 MET A 63 ALA A 81 1 19 HELIX 6 AA6 ASN A 99 ASP A 108 1 10 HELIX 7 AA7 ASP A 123 VAL A 131 1 9 HELIX 8 AA8 GLY A 145 ARG A 158 1 14 HELIX 9 AA9 PRO A 197 GLY A 203 1 7 HELIX 10 AB1 HIS A 204 ARG A 224 1 21 HELIX 11 AB2 ARG A 224 GLN A 230 1 7 HELIX 12 AB3 THR A 234 GLU A 244 1 11 HELIX 13 AB4 PHE B 9 MET B 12 5 4 HELIX 14 AB5 PHE B 13 ALA B 18 1 6 HELIX 15 AB6 TYR B 19 ARG B 28 1 10 HELIX 16 AB7 ASN B 37 ALA B 42 5 6 HELIX 17 AB8 MET B 63 ALA B 81 1 19 HELIX 18 AB9 ASN B 99 VAL B 107 1 9 HELIX 19 AC1 ASP B 123 VAL B 131 1 9 HELIX 20 AC2 GLY B 145 ARG B 158 1 14 HELIX 21 AC3 PRO B 197 GLY B 203 1 7 HELIX 22 AC4 HIS B 204 ARG B 224 1 21 HELIX 23 AC5 ARG B 224 GLU B 229 1 6 HELIX 24 AC6 THR B 234 ASP B 243 1 10 SHEET 1 AA1 6 VAL A 31 ILE A 36 0 SHEET 2 AA1 6 VAL A 1 ILE A 6 1 N VAL A 5 O ILE A 36 SHEET 3 AA1 6 GLY A 111 LEU A 115 1 O VAL A 114 N ILE A 6 SHEET 4 AA1 6 VAL A 88 MET A 91 1 N VAL A 89 O ILE A 113 SHEET 5 AA1 6 GLN A 133 SER A 136 1 O GLN A 133 N TYR A 90 SHEET 6 AA1 6 LYS A 96 THR A 97 1 N LYS A 96 O SER A 136 SHEET 1 AA2 2 ASP A 50 GLU A 51 0 SHEET 2 AA2 2 VAL A 61 MET A 62 -1 O VAL A 61 N GLU A 51 SHEET 1 AA3 2 GLN A 190 PHE A 191 0 SHEET 2 AA3 2 LEU A 194 ASP A 195 -1 O LEU A 194 N PHE A 191 SHEET 1 AA4 6 VAL B 31 ILE B 36 0 SHEET 2 AA4 6 VAL B 1 ILE B 6 1 N PHE B 3 O THR B 34 SHEET 3 AA4 6 GLY B 111 LEU B 115 1 O VAL B 114 N ALA B 4 SHEET 4 AA4 6 VAL B 88 MET B 91 1 N VAL B 89 O LEU B 115 SHEET 5 AA4 6 GLN B 133 SER B 136 1 O GLN B 133 N TYR B 90 SHEET 6 AA4 6 LYS B 96 THR B 97 1 N LYS B 96 O SER B 136 SHEET 1 AA5 2 ASP B 50 GLU B 51 0 SHEET 2 AA5 2 VAL B 61 MET B 62 -1 O VAL B 61 N GLU B 51 SHEET 1 AA6 2 GLN B 190 PHE B 191 0 SHEET 2 AA6 2 LEU B 194 ASP B 195 -1 O LEU B 194 N PHE B 191 CISPEP 1 LYS A 187 PRO A 188 0 11.93 CISPEP 2 LYS B 187 PRO B 188 0 11.61 SITE 1 AC1 18 TYR A 90 MET A 91 SER A 92 PRO A 93 SITE 2 AC1 18 GLN A 94 GLY A 117 TYR A 119 GLU A 120 SITE 3 AC1 18 SER A 136 ILE A 137 GLY A 138 TYR A 140 SITE 4 AC1 18 LEU A 142 GLY A 144 GLY A 145 PRO A 148 SITE 5 AC1 18 SER B 174 ASP B 181 SITE 1 AC2 19 SER A 174 ASP A 181 TYR B 90 MET B 91 SITE 2 AC2 19 SER B 92 PRO B 93 GLN B 94 GLY B 117 SITE 3 AC2 19 TYR B 119 GLU B 120 SER B 136 ILE B 137 SITE 4 AC2 19 GLY B 138 TYR B 140 LEU B 142 SER B 143 SITE 5 AC2 19 GLY B 144 GLY B 145 PRO B 148 CRYST1 65.960 65.960 132.590 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007542 0.00000