HEADER VIRAL PROTEIN 24-MAY-21 7MZI TITLE SARS-COV-2 RECEPTOR BINDING DOMAIN BOUND TO FAB WCSL 129 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WCSL 129 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: WCSL 129 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RECEPTOR BINDING DOMAIN (RBD); COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 17 2; SOURCE 18 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 19 ORGANISM_TAXID: 2697049; SOURCE 20 GENE: S, 2; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, SPIKE, RBD, HUMAN ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PYMM,L.L.TAN,M.H.DIETRICH,L.J.CHAN,W.H.THAM REVDAT 5 09-OCT-24 7MZI 1 REMARK REVDAT 4 18-OCT-23 7MZI 1 REMARK REVDAT 3 27-OCT-21 7MZI 1 JRNL REVDAT 2 20-OCT-21 7MZI 1 JRNL REVDAT 1 06-OCT-21 7MZI 0 JRNL AUTH A.K.WHEATLEY,P.PYMM,R.ESTERBAUER,M.H.DIETRICH,W.S.LEE, JRNL AUTH 2 D.DREW,H.G.KELLY,L.J.CHAN,F.L.MORDANT,K.A.BLACK,A.ADAIR, JRNL AUTH 3 H.X.TAN,J.A.JUNO,K.M.WRAGG,T.AMARASENA,E.LOPEZ,K.J.SELVA, JRNL AUTH 4 E.R.HAYCROFT,J.P.COONEY,H.VENUGOPAL,L.L.TAN,M.T.O NEILL, JRNL AUTH 5 C.C.ALLISON,D.CROMER,M.P.DAVENPORT,R.A.BOWEN,A.W.CHUNG, JRNL AUTH 6 M.PELLEGRINI,M.T.LIDDAMENT,A.GLUKHOVA,K.SUBBARAO,S.J.KENT, JRNL AUTH 7 W.H.THAM JRNL TITL LANDSCAPE OF HUMAN ANTIBODY RECOGNITION OF THE SARS-COV-2 JRNL TITL 2 RECEPTOR BINDING DOMAIN. JRNL REF CELL REP V. 37 09822 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34610292 JRNL DOI 10.1016/J.CELREP.2021.109822 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 69174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.230 REMARK 3 FREE R VALUE TEST SET COUNT : 3616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5500 - 5.4800 0.99 2579 166 0.1579 0.1615 REMARK 3 2 5.4800 - 4.3500 1.00 2547 152 0.1256 0.1626 REMARK 3 3 4.3500 - 3.8000 1.00 2537 159 0.1427 0.1488 REMARK 3 4 3.8000 - 3.4500 1.00 2558 135 0.1557 0.1810 REMARK 3 5 3.4500 - 3.2000 1.00 2541 143 0.1617 0.2116 REMARK 3 6 3.2000 - 3.0200 1.00 2543 151 0.1776 0.2131 REMARK 3 7 3.0200 - 2.8600 1.00 2531 123 0.1726 0.2081 REMARK 3 8 2.8600 - 2.7400 0.99 2502 135 0.1811 0.2138 REMARK 3 9 2.7400 - 2.6300 1.00 2553 159 0.1925 0.2398 REMARK 3 10 2.6300 - 2.5400 1.00 2520 129 0.1962 0.2709 REMARK 3 11 2.5400 - 2.4600 0.99 2508 156 0.1920 0.2533 REMARK 3 12 2.4600 - 2.3900 1.00 2552 122 0.1909 0.2636 REMARK 3 13 2.3900 - 2.3300 0.99 2526 125 0.1906 0.2345 REMARK 3 14 2.3300 - 2.2700 0.99 2526 136 0.1874 0.2178 REMARK 3 15 2.2700 - 2.2200 0.99 2518 132 0.1824 0.2223 REMARK 3 16 2.2200 - 2.1700 1.00 2511 119 0.1843 0.2316 REMARK 3 17 2.1700 - 2.1300 0.99 2535 133 0.1887 0.2583 REMARK 3 18 2.1300 - 2.0900 0.99 2501 136 0.1999 0.2690 REMARK 3 19 2.0900 - 2.0500 1.00 2494 135 0.2023 0.2621 REMARK 3 20 2.0500 - 2.0200 0.98 2546 144 0.2152 0.2554 REMARK 3 21 2.0200 - 1.9900 0.99 2445 160 0.2238 0.2605 REMARK 3 22 1.9900 - 1.9600 0.99 2502 144 0.2264 0.2765 REMARK 3 23 1.9600 - 1.9300 0.99 2487 136 0.2297 0.2576 REMARK 3 24 1.9300 - 1.9000 0.99 2526 110 0.2436 0.2706 REMARK 3 25 1.9000 - 1.8700 0.98 2486 139 0.2536 0.2863 REMARK 3 26 1.8700 - 1.8500 0.99 2484 137 0.2815 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953732 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69190 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 44.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.82200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG3350, 0.1 M TRI SODIUM CITRATE REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.41358 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.94800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.96291 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.41358 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.94800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 53.96291 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 THR H 223 REMARK 465 HIS H 224 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 133 CD CE NZ REMARK 470 LYS L 160 CG CD CE NZ REMARK 470 LYS H 205 CD CE NZ REMARK 470 LYS H 210 CD CE NZ REMARK 470 LEU A 390 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 523 O HOH H 546 1.84 REMARK 500 O HOH H 480 O HOH H 505 1.92 REMARK 500 O HOH A 736 O HOH A 798 1.98 REMARK 500 O HOH L 529 O HOH H 552 2.03 REMARK 500 O HOH A 800 O HOH A 815 2.03 REMARK 500 O HOH A 744 O HOH A 806 2.04 REMARK 500 O HOH L 472 O HOH L 530 2.06 REMARK 500 O HOH A 750 O HOH A 794 2.12 REMARK 500 O HOH H 466 O HOH H 513 2.12 REMARK 500 O HOH A 761 O HOH A 804 2.15 REMARK 500 O HOH A 803 O HOH A 810 2.15 REMARK 500 O HOH L 477 O HOH L 518 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 200 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 28 -87.78 -114.12 REMARK 500 ASN L 52 -47.12 75.42 REMARK 500 ASP L 53 19.76 -149.67 REMARK 500 SER L 68 -169.60 -101.09 REMARK 500 ASN L 174 -1.09 71.02 REMARK 500 ASP H 148 64.03 61.79 REMARK 500 ASN A 422 -53.72 -130.88 REMARK 500 PHE A 464 15.26 59.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MZF RELATED DB: PDB REMARK 900 RELATED ID: 7MZG RELATED DB: PDB REMARK 900 RELATED ID: 7MZH RELATED DB: PDB DBREF 7MZI L 1 216 PDB 7MZI 7MZI 1 216 DBREF 7MZI H 1 224 PDB 7MZI 7MZI 1 224 DBREF 7MZI A 331 527 UNP P0DTC2 SPIKE_SARS2 331 527 SEQADV 7MZI GLY A 528 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI SER A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI HIS A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI HIS A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZI HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQRES 1 L 216 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 216 PRO GLY GLN SER VAL SER ILE SER CYS SER GLY THR TYR SEQRES 3 L 216 SER ASN ILE GLY SER ASN PRO VAL ASN TRP TYR GLN GLN SEQRES 4 L 216 VAL PRO GLY THR ALA PRO LYS LEU LEU ILE TYR ALA ASN SEQRES 5 L 216 ASP GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER LYS SER ALA THR SER ALA PHE LEU ALA ILE GLY GLY SEQRES 7 L 216 LEU GLN SER GLU ASP ASP ALA ASP TYR TYR CYS SER THR SEQRES 8 L 216 TRP ASP ASP SER LEU PRO GLY PRO LEU PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ASN PRO SEQRES 10 L 216 THR VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP GLY SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR LYS PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 224 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 224 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 224 PHE THR PHE SER ARG PHE ALA MET THR TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 H 224 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 224 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 224 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 224 ALA VAL TYR TYR CYS ALA LYS VAL GLY TRP GLY ALA PHE SEQRES 9 H 224 ASP ILE TRP GLY GLN GLY THR MET VAL THR VAL SER SER SEQRES 10 H 224 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 224 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 224 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 224 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 224 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 224 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 224 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 224 THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP SEQRES 18 H 224 LYS THR HIS SEQRES 1 A 205 ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN SEQRES 2 A 205 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 205 ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR SEQRES 4 A 205 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 205 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 205 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 205 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 205 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 205 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 205 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 205 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 205 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 205 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 205 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 205 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 205 GLY PRO GLY SER HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET GOL L 301 6 HET GOL L 302 6 HET GOL L 303 6 HET GOL L 304 6 HET GOL H 301 6 HET GOL H 302 6 HET GOL H 303 6 HET GOL H 304 14 HET GOL H 305 14 HET GOL H 306 14 HET GOL H 307 14 HET PG4 A 601 13 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 GOL 14(C3 H8 O3) FORMUL 16 PG4 C8 H18 O5 FORMUL 20 HOH *426(H2 O) HELIX 1 AA1 ASN L 28 ASN L 32 5 5 HELIX 2 AA2 GLN L 80 ASP L 84 5 5 HELIX 3 AA3 SER L 125 ALA L 131 1 7 HELIX 4 AA4 THR L 185 SER L 191 1 7 HELIX 5 AA5 THR H 28 PHE H 32 5 5 HELIX 6 AA6 ARG H 87 THR H 91 5 5 HELIX 7 AA7 SER H 131 LYS H 133 5 3 HELIX 8 AA8 SER H 160 ALA H 162 5 3 HELIX 9 AA9 SER H 191 LEU H 193 5 3 HELIX 10 AB1 LYS H 205 ASN H 208 5 4 HELIX 11 AB2 PRO A 337 ASN A 343 1 7 HELIX 12 AB3 SER A 349 TRP A 353 5 5 HELIX 13 AB4 ASP A 364 SER A 371 1 8 HELIX 14 AB5 SER A 383 ASN A 388 1 6 HELIX 15 AB6 ASP A 405 ILE A 410 5 6 HELIX 16 AB7 GLY A 416 ASN A 422 1 7 HELIX 17 AB8 SER A 438 SER A 443 1 6 HELIX 18 AB9 GLY A 502 TYR A 505 5 4 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 105 VAL L 109 1 O LYS L 106 N ALA L 10 SHEET 3 AA1 5 ALA L 85 THR L 91 -1 N ALA L 85 O LEU L 107 SHEET 4 AA1 5 ASN L 35 GLN L 39 -1 N ASN L 35 O SER L 90 SHEET 5 AA1 5 LYS L 46 ILE L 49 -1 O LEU L 48 N TRP L 36 SHEET 1 AA2 4 SER L 9 GLY L 12 0 SHEET 2 AA2 4 THR L 105 VAL L 109 1 O LYS L 106 N ALA L 10 SHEET 3 AA2 4 ALA L 85 THR L 91 -1 N ALA L 85 O LEU L 107 SHEET 4 AA2 4 LEU L 100 PHE L 101 -1 O LEU L 100 N THR L 91 SHEET 1 AA3 3 VAL L 18 SER L 23 0 SHEET 2 AA3 3 SER L 71 ILE L 76 -1 O LEU L 74 N ILE L 20 SHEET 3 AA3 3 PHE L 63 LYS L 67 -1 N SER L 64 O ALA L 75 SHEET 1 AA4 4 THR L 118 PHE L 122 0 SHEET 2 AA4 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AA4 4 TYR L 176 LEU L 184 -1 O LEU L 184 N ALA L 134 SHEET 4 AA4 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AA5 4 THR L 118 PHE L 122 0 SHEET 2 AA5 4 ALA L 134 PHE L 143 -1 O LEU L 139 N THR L 120 SHEET 3 AA5 4 TYR L 176 LEU L 184 -1 O LEU L 184 N ALA L 134 SHEET 4 AA5 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AA6 4 SER L 157 PRO L 158 0 SHEET 2 AA6 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AA6 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AA6 4 SER L 204 VAL L 210 -1 O SER L 204 N HIS L 201 SHEET 1 AA7 4 GLN H 3 SER H 7 0 SHEET 2 AA7 4 LEU H 18 SER H 25 -1 O ALA H 23 N LEU H 5 SHEET 3 AA7 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA7 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA8 6 GLY H 10 VAL H 12 0 SHEET 2 AA8 6 THR H 111 VAL H 115 1 O THR H 114 N GLY H 10 SHEET 3 AA8 6 ALA H 92 GLY H 100 -1 N TYR H 94 O THR H 111 SHEET 4 AA8 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA8 6 LEU H 45 ILE H 51 -1 O SER H 49 N TRP H 36 SHEET 6 AA8 6 THR H 58 TYR H 60 -1 O TYR H 59 N ALA H 50 SHEET 1 AA9 4 GLY H 10 VAL H 12 0 SHEET 2 AA9 4 THR H 111 VAL H 115 1 O THR H 114 N GLY H 10 SHEET 3 AA9 4 ALA H 92 GLY H 100 -1 N TYR H 94 O THR H 111 SHEET 4 AA9 4 ALA H 103 TRP H 107 -1 O ALA H 103 N GLY H 100 SHEET 1 AB1 4 SER H 124 LEU H 128 0 SHEET 2 AB1 4 THR H 139 TYR H 149 -1 O GLY H 143 N LEU H 128 SHEET 3 AB1 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AB1 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AB2 4 THR H 135 SER H 136 0 SHEET 2 AB2 4 THR H 139 TYR H 149 -1 O THR H 139 N SER H 136 SHEET 3 AB2 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AB2 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB3 3 THR H 155 TRP H 158 0 SHEET 2 AB3 3 ILE H 199 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB3 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SHEET 1 AB4 5 ASN A 354 ILE A 358 0 SHEET 2 AB4 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AB4 5 PRO A 507 GLU A 516 -1 O TYR A 508 N ILE A 402 SHEET 4 AB4 5 GLY A 431 ASN A 437 -1 N CYS A 432 O LEU A 513 SHEET 5 AB4 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AB5 3 CYS A 361 VAL A 362 0 SHEET 2 AB5 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AB5 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AB6 2 LEU A 452 ARG A 454 0 SHEET 2 AB6 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AB7 2 TYR A 473 GLN A 474 0 SHEET 2 AB7 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SSBOND 1 CYS L 22 CYS L 89 1555 1555 2.08 SSBOND 2 CYS L 138 CYS L 197 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.11 SSBOND 4 CYS H 144 CYS H 200 1555 1555 2.04 SSBOND 5 CYS A 336 CYS A 361 1555 1555 2.04 SSBOND 6 CYS A 379 CYS A 432 1555 1555 2.09 SSBOND 7 CYS A 391 CYS A 525 1555 1555 2.04 SSBOND 8 CYS A 480 CYS A 488 1555 1555 2.05 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 CISPEP 1 TYR L 144 PRO L 145 0 2.45 CISPEP 2 PHE H 150 PRO H 151 0 -7.65 CISPEP 3 GLU H 152 PRO H 153 0 -3.52 CRYST1 106.562 71.896 113.688 90.00 108.32 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009384 0.000000 0.003107 0.00000 SCALE2 0.000000 0.013909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009266 0.00000