HEADER VIRAL PROTEIN 24-MAY-21 7MZL TITLE SARS-COV-2 RECEPTOR BINDING DOMAIN BOUND TO FAB PDI 210 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN (RBD); COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PDI 210 HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PDI 210 LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, SPIKE, RBD, HUMAN ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PYMM,L.J.CHAN,M.H.DIETRICH,L.L.TAN,W.H.THAM REVDAT 4 18-OCT-23 7MZL 1 REMARK REVDAT 3 27-OCT-21 7MZL 1 JRNL REVDAT 2 20-OCT-21 7MZL 1 JRNL REVDAT 1 06-OCT-21 7MZL 0 JRNL AUTH A.K.WHEATLEY,P.PYMM,R.ESTERBAUER,M.H.DIETRICH,W.S.LEE, JRNL AUTH 2 D.DREW,H.G.KELLY,L.J.CHAN,F.L.MORDANT,K.A.BLACK,A.ADAIR, JRNL AUTH 3 H.X.TAN,J.A.JUNO,K.M.WRAGG,T.AMARASENA,E.LOPEZ,K.J.SELVA, JRNL AUTH 4 E.R.HAYCROFT,J.P.COONEY,H.VENUGOPAL,L.L.TAN,M.T.O NEILL, JRNL AUTH 5 C.C.ALLISON,D.CROMER,M.P.DAVENPORT,R.A.BOWEN,A.W.CHUNG, JRNL AUTH 6 M.PELLEGRINI,M.T.LIDDAMENT,A.GLUKHOVA,K.SUBBARAO,S.J.KENT, JRNL AUTH 7 W.H.THAM JRNL TITL LANDSCAPE OF HUMAN ANTIBODY RECOGNITION OF THE SARS-COV-2 JRNL TITL 2 RECEPTOR BINDING DOMAIN. JRNL REF CELL REP V. 37 09822 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34610292 JRNL DOI 10.1016/J.CELREP.2021.109822 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3040 - 5.8708 1.00 3050 152 0.2212 0.2316 REMARK 3 2 5.8708 - 4.6613 1.00 2867 151 0.2127 0.2672 REMARK 3 3 4.6613 - 4.0725 1.00 2863 134 0.2062 0.2531 REMARK 3 4 4.0725 - 3.7003 1.00 2833 157 0.2580 0.3062 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MZL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257074. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.23 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12240 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.304 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.34400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 1.30700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG6000, 0.1% (W/V) N-OCTYL-B-D REMARK 280 -GLUCOSIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 88.78150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 88.78150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 88.78150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 88.78150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 88.78150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 88.78150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 88.78150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 88.78150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 LEU A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 GLN H 1 REMARK 465 SER H 135 REMARK 465 LYS H 136 REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 222 REMARK 465 CYS H 223 REMARK 465 ASP H 224 REMARK 465 LYS H 225 REMARK 465 THR H 226 REMARK 465 HIS H 227 REMARK 465 CYS L 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 333 OG1 CG2 REMARK 470 LEU A 335 CG CD1 CD2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 364 CG OD1 OD2 REMARK 470 VAL A 367 CG1 CG2 REMARK 470 LEU A 368 CG CD1 CD2 REMARK 470 ASN A 370 CG OD1 ND2 REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 SER A 383 OG REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 ASP A 389 CG OD1 OD2 REMARK 470 LEU A 390 CG CD1 CD2 REMARK 470 PHE A 392 CD2 CE1 CE2 CZ REMARK 470 ARG A 408 NE CZ NH1 NH2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 444 CD CE NZ REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 LYS A 462 CG CD CE NZ REMARK 470 ASN A 481 CG OD1 ND2 REMARK 470 VAL A 483 CG1 CG2 REMARK 470 VAL A 503 CG1 CG2 REMARK 470 GLU A 516 CG CD OE1 OE2 REMARK 470 LEU A 517 CG CD1 CD2 REMARK 470 GLN H 3 CG CD OE1 NE2 REMARK 470 LEU H 12 CD1 CD2 REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 SER H 15 OG REMARK 470 LEU H 20 CD1 CD2 REMARK 470 VAL H 23 CG1 CG2 REMARK 470 SER H 62 OG REMARK 470 LYS H 64 CE NZ REMARK 470 LYS H 75 CD CE NZ REMARK 470 GLN H 77 CG CD OE1 NE2 REMARK 470 LYS H 81 CG CD CE NZ REMARK 470 GLN H 112 CG CD OE1 NE2 REMARK 470 ILE H 114 CG1 CG2 CD1 REMARK 470 LEU H 120 CG CD1 CD2 REMARK 470 LYS H 124 CG CD CE NZ REMARK 470 SER H 134 OG REMARK 470 ASP H 151 CG OD1 OD2 REMARK 470 LEU H 177 CG CD1 CD2 REMARK 470 ASN H 206 CG OD1 ND2 REMARK 470 LYS H 208 CD CE NZ REMARK 470 ASN H 211 CG OD1 ND2 REMARK 470 LYS H 213 CD CE NZ REMARK 470 LYS H 217 CG CD CE NZ REMARK 470 GLU H 219 CG CD OE1 OE2 REMARK 470 LYS H 221 CG CD CE NZ REMARK 470 GLU L 1 CG CD OE1 OE2 REMARK 470 VAL L 3 CG1 CG2 REMARK 470 LEU L 11 CG CD1 CD2 REMARK 470 LEU L 13 CG CD1 CD2 REMARK 470 ARG L 24 CG CD NE CZ NH1 NH2 REMARK 470 GLN L 27 CG CD OE1 NE2 REMARK 470 SER L 28 OG REMARK 470 LEU L 33 CG CD1 CD2 REMARK 470 LEU L 47 CD1 CD2 REMARK 470 LYS L 53 CG CD CE NZ REMARK 470 ASP L 70 CG OD1 OD2 REMARK 470 LEU L 83 CD1 CD2 REMARK 470 LEU L 95 CG CD1 CD2 REMARK 470 LYS L 102 CG CD CE NZ REMARK 470 GLU L 104 CG CD OE1 OE2 REMARK 470 LYS L 106 CE NZ REMARK 470 LYS L 125 CD CE NZ REMARK 470 GLU L 142 CD OE1 OE2 REMARK 470 LYS L 144 CG CD CE NZ REMARK 470 GLU L 164 CG CD OE1 OE2 REMARK 470 LYS L 168 CG CD CE NZ REMARK 470 SER L 173 OG REMARK 470 LYS L 182 CE NZ REMARK 470 LYS L 187 CD CE NZ REMARK 470 LYS L 189 CD CE NZ REMARK 470 LYS L 206 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 352 63.54 -117.06 REMARK 500 TYR A 365 -55.34 61.40 REMARK 500 ILE A 402 -157.09 -132.20 REMARK 500 ASN A 422 -63.55 -123.03 REMARK 500 LEU A 441 -58.81 -145.80 REMARK 500 ASN A 481 49.23 -85.49 REMARK 500 PRO H 14 6.28 -67.39 REMARK 500 GLU H 16 -151.65 -89.65 REMARK 500 LEU H 29 48.03 -80.17 REMARK 500 SER H 30 -86.61 -87.04 REMARK 500 PRO H 41 109.49 -54.08 REMARK 500 SER H 84 70.70 53.81 REMARK 500 ASP H 151 80.30 60.19 REMARK 500 ALA L 51 -7.69 68.45 REMARK 500 SER L 52 -15.86 -155.62 REMARK 500 ASN L 93 -52.23 -137.77 REMARK 500 SER L 155 -57.54 -135.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MZF RELATED DB: PDB REMARK 900 RELATED ID: 7MZG RELATED DB: PDB REMARK 900 RELATED ID: 7MZH RELATED DB: PDB REMARK 900 RELATED ID: 7MZI RELATED DB: PDB REMARK 900 RELATED ID: 7MZJ RELATED DB: PDB REMARK 900 RELATED ID: 7MZK RELATED DB: PDB DBREF 7MZL A 331 527 UNP P0DTC2 SPIKE_SARS2 331 527 DBREF 7MZL H 1 227 PDB 7MZL 7MZL 1 227 DBREF 7MZL L 1 213 PDB 7MZL 7MZL 1 213 SEQADV 7MZL GLY A 528 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL SER A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL HIS A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL HIS A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZL HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 205 ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN SEQRES 2 A 205 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 205 ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR SEQRES 4 A 205 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 205 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 205 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 205 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 205 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 205 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 205 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 205 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 205 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 205 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 205 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 205 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 205 GLY PRO GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 H 227 GLN VAL GLN LEU GLN GLN TRP GLY ALA GLY LEU LEU LYS SEQRES 2 H 227 PRO SER GLU THR LEU SER LEU THR CYS VAL VAL TYR GLY SEQRES 3 H 227 GLU THR LEU SER GLY TYR TYR TRP THR TRP ILE ARG GLN SEQRES 4 H 227 SER PRO GLY LYS GLY LEU GLU TRP ILE GLY GLU ILE SER SEQRES 5 H 227 LEU ARG GLY THR ALA ASN TYR ASN PRO SER LEU LYS SER SEQRES 6 H 227 ARG VAL THR LEU SER VAL GLU ALA SER LYS ASN GLN PHE SEQRES 7 H 227 SER LEU LYS MET THR SER VAL THR ALA ALA ASP THR ALA SEQRES 8 H 227 VAL TYR TYR CYS VAL GLY GLY VAL VAL LEU ASP ASN VAL SEQRES 9 H 227 VAL TRP PHE ASP PRO TRP GLY GLN GLY ILE PRO VAL THR SEQRES 10 H 227 VAL SER LEU ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 227 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 227 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 227 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 227 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 227 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 227 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 227 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 227 SER CYS ASP LYS THR HIS SEQRES 1 L 213 GLU SER VAL LEU THR GLN SER PRO VAL SER LEU SER LEU SEQRES 2 L 213 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 213 GLN SER VAL GLY THR TYR LEU ALA TRP TYR GLN HIS ARG SEQRES 4 L 213 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR ASN ALA SER SEQRES 5 L 213 LYS ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 L 213 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 213 GLU PRO GLU ASP LEU ALA VAL TYR PHE CYS GLN GLN ARG SEQRES 8 L 213 SER ASN TRP LEU THR PHE GLY GLY GLY THR LYS VAL GLU SEQRES 9 L 213 ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 213 ASN ARG GLY GLU CYS HET NAG B 1 14 HET NAG B 2 14 HET FUC B 3 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 FUC C6 H12 O5 HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 TYR A 365 SER A 371 1 7 HELIX 3 AA3 THR A 385 ASP A 389 5 5 HELIX 4 AA4 ASP A 405 ILE A 410 5 6 HELIX 5 AA5 GLY A 416 ASN A 422 1 7 HELIX 6 AA6 SER A 438 SER A 443 1 6 HELIX 7 AA7 GLY A 502 TYR A 505 5 4 HELIX 8 AA8 THR H 86 THR H 90 5 5 HELIX 9 AA9 SER H 194 GLN H 199 1 6 HELIX 10 AB1 LYS H 208 ASN H 211 5 4 HELIX 11 AB2 GLU L 79 LEU L 83 5 5 HELIX 12 AB3 SER L 120 GLY L 127 1 8 HELIX 13 AB4 LYS L 182 GLU L 186 1 5 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O SER A 399 N ASN A 354 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AA2 3 CYS A 361 VAL A 362 0 SHEET 2 AA2 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AA2 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 3 GLN H 3 GLY H 8 0 SHEET 2 AA5 3 THR H 17 TYR H 25 -1 O TYR H 25 N GLN H 3 SHEET 3 AA5 3 GLN H 77 THR H 83 -1 O LEU H 80 N LEU H 20 SHEET 1 AA6 6 LEU H 11 LEU H 12 0 SHEET 2 AA6 6 ILE H 114 VAL H 118 1 O THR H 117 N LEU H 12 SHEET 3 AA6 6 ALA H 91 VAL H 96 -1 N ALA H 91 O VAL H 116 SHEET 4 AA6 6 TRP H 34 SER H 40 -1 N ILE H 37 O TYR H 94 SHEET 5 AA6 6 GLY H 44 ILE H 51 -1 O ILE H 51 N TRP H 34 SHEET 6 AA6 6 ALA H 57 TYR H 59 -1 O ASN H 58 N GLU H 50 SHEET 1 AA7 2 GLY H 98 LEU H 101 0 SHEET 2 AA7 2 VAL H 104 PHE H 107 -1 O VAL H 104 N LEU H 101 SHEET 1 AA8 4 SER H 127 LEU H 131 0 SHEET 2 AA8 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AA8 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA8 4 VAL H 170 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AA9 4 SER H 127 LEU H 131 0 SHEET 2 AA9 4 THR H 142 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 AA9 4 TYR H 183 PRO H 192 -1 O LEU H 185 N VAL H 149 SHEET 4 AA9 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB1 3 THR H 158 TRP H 161 0 SHEET 2 AB1 3 TYR H 201 HIS H 207 -1 O ASN H 204 N SER H 160 SHEET 3 AB1 3 THR H 212 VAL H 218 -1 O THR H 212 N HIS H 207 SHEET 1 AB2 4 LEU L 4 SER L 7 0 SHEET 2 AB2 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB2 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AB2 4 PHE L 62 GLY L 66 -1 N SER L 63 O THR L 74 SHEET 1 AB3 6 SER L 10 LEU L 13 0 SHEET 2 AB3 6 THR L 101 ILE L 105 1 O GLU L 104 N LEU L 11 SHEET 3 AB3 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 101 SHEET 4 AB3 6 LEU L 33 HIS L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 AB3 6 ARG L 45 TYR L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 AB3 6 LYS L 53 ARG L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 AB4 4 SER L 10 LEU L 13 0 SHEET 2 AB4 4 THR L 101 ILE L 105 1 O GLU L 104 N LEU L 11 SHEET 3 AB4 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 101 SHEET 4 AB4 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 90 SHEET 1 AB5 4 VAL L 114 PHE L 117 0 SHEET 2 AB5 4 THR L 128 PHE L 138 -1 O LEU L 134 N PHE L 115 SHEET 3 AB5 4 TYR L 172 SER L 181 -1 O LEU L 180 N ALA L 129 SHEET 4 AB5 4 SER L 158 VAL L 162 -1 N GLN L 159 O THR L 177 SHEET 1 AB6 4 LEU L 153 GLN L 154 0 SHEET 2 AB6 4 LYS L 144 VAL L 149 -1 N TRP L 147 O GLN L 154 SHEET 3 AB6 4 VAL L 190 THR L 196 -1 O ALA L 192 N LYS L 148 SHEET 4 AB6 4 VAL L 204 ASN L 209 -1 O VAL L 204 N VAL L 195 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 95 1555 1555 2.03 SSBOND 6 CYS H 147 CYS H 203 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 8 CYS L 133 CYS L 193 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O6 NAG B 1 C1 FUC B 3 1555 1555 1.37 CISPEP 1 PHE H 153 PRO H 154 0 -3.27 CISPEP 2 GLU H 155 PRO H 156 0 -1.14 CISPEP 3 SER L 7 PRO L 8 0 -2.14 CISPEP 4 TYR L 139 PRO L 140 0 1.29 CRYST1 177.563 177.563 68.574 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014583 0.00000