HEADER VIRAL PROTEIN 24-MAY-21 7MZM TITLE SARS-COV-2 RECEPTOR BINDING DOMAIN BOUND TO FAB PDI 215 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PDI 215 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PDI 215 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SPIKE PROTEIN S1; COMPND 11 CHAIN: A; COMPND 12 FRAGMENT: RECEPTOR BINDING DOMAIN (RBD); COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 17 2; SOURCE 18 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 19 ORGANISM_TAXID: 2697049; SOURCE 20 GENE: S, 2; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, SPIKE, RBD, HUMAN ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.PYMM,M.H.DIETRICH,L.L.TAN,L.J.CHAN,W.H.THAM REVDAT 4 18-OCT-23 7MZM 1 REMARK REVDAT 3 27-OCT-21 7MZM 1 JRNL REVDAT 2 20-OCT-21 7MZM 1 JRNL REVDAT 1 06-OCT-21 7MZM 0 JRNL AUTH A.K.WHEATLEY,P.PYMM,R.ESTERBAUER,M.H.DIETRICH,W.S.LEE, JRNL AUTH 2 D.DREW,H.G.KELLY,L.J.CHAN,F.L.MORDANT,K.A.BLACK,A.ADAIR, JRNL AUTH 3 H.X.TAN,J.A.JUNO,K.M.WRAGG,T.AMARASENA,E.LOPEZ,K.J.SELVA, JRNL AUTH 4 E.R.HAYCROFT,J.P.COONEY,H.VENUGOPAL,L.L.TAN,M.T.O NEILL, JRNL AUTH 5 C.C.ALLISON,D.CROMER,M.P.DAVENPORT,R.A.BOWEN,A.W.CHUNG, JRNL AUTH 6 M.PELLEGRINI,M.T.LIDDAMENT,A.GLUKHOVA,K.SUBBARAO,S.J.KENT, JRNL AUTH 7 W.H.THAM JRNL TITL LANDSCAPE OF HUMAN ANTIBODY RECOGNITION OF THE SARS-COV-2 JRNL TITL 2 RECEPTOR BINDING DOMAIN. JRNL REF CELL REP V. 37 09822 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34610292 JRNL DOI 10.1016/J.CELREP.2021.109822 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 5.5400 1.00 2358 151 0.2023 0.2503 REMARK 3 2 5.5400 - 4.4000 1.00 2282 146 0.1611 0.1695 REMARK 3 3 4.4000 - 3.8400 1.00 2240 143 0.1688 0.2128 REMARK 3 4 3.8400 - 3.4900 1.00 2250 144 0.2002 0.2398 REMARK 3 5 3.4900 - 3.2400 1.00 2232 142 0.2222 0.2507 REMARK 3 6 3.2400 - 3.0500 1.00 2230 142 0.2494 0.3086 REMARK 3 7 3.0500 - 2.9000 1.00 2234 143 0.2712 0.3195 REMARK 3 8 2.9000 - 2.7700 1.00 2217 141 0.2529 0.3330 REMARK 3 9 2.7700 - 2.6600 1.00 2189 140 0.2450 0.2778 REMARK 3 10 2.6600 - 2.5700 1.00 2226 142 0.2578 0.2807 REMARK 3 11 2.5700 - 2.4900 1.00 2203 141 0.2920 0.3249 REMARK 3 12 2.4900 - 2.4200 1.00 2214 141 0.3423 0.4295 REMARK 3 13 2.4200 - 2.3600 1.00 2213 141 0.3068 0.3963 REMARK 3 14 2.3600 - 2.3000 1.00 2207 141 0.3225 0.3584 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7MZM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953717 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33371 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 48.748 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.57 REMARK 200 R MERGE (I) : 0.16400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.72 REMARK 200 R MERGE FOR SHELL (I) : 1.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN 12% ISOPROPANOL, 12% PEG4000, 0.1 M REMARK 280 TRI SODIUM CITRATE PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.17900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.17900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 47.90050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.16250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 47.90050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.16250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.17900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 47.90050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.16250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.17900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 47.90050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.16250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 103 REMARK 465 ASP H 104 REMARK 465 SER H 105 REMARK 465 SER H 234 REMARK 465 CYS H 235 REMARK 465 ASP H 236 REMARK 465 LYS H 237 REMARK 465 THR H 238 REMARK 465 HIS H 239 REMARK 465 CYS L 216 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 GLY A 526 REMARK 465 PRO A 527 REMARK 465 GLY A 528 REMARK 465 SER A 529 REMARK 465 HIS A 530 REMARK 465 HIS A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER H 106 OG REMARK 470 ASP H 107 CG OD1 OD2 REMARK 470 LYS H 124 CG CD CE NZ REMARK 470 LYS H 136 CE NZ REMARK 470 SER H 147 OG REMARK 470 LYS H 148 CG CD CE NZ REMARK 470 ASN H 218 CG OD1 ND2 REMARK 470 LYS H 220 CG CD CE NZ REMARK 470 ASN H 223 CG OD1 ND2 REMARK 470 LYS H 225 CG CD CE NZ REMARK 470 GLU L 1 CG CD OE1 OE2 REMARK 470 ARG L 78 NE CZ NH1 NH2 REMARK 470 LYS L 128 CE NZ REMARK 470 LYS L 147 CE NZ REMARK 470 LYS L 151 CE NZ REMARK 470 ASN L 154 CG OD1 ND2 REMARK 470 LEU L 156 CG CD1 CD2 REMARK 470 LYS L 171 CG CD CE NZ REMARK 470 LYS L 190 CG CD CE NZ REMARK 470 LYS L 192 CD CE NZ REMARK 470 GLN L 201 CD OE1 NE2 REMARK 470 GLU L 215 CG CD OE1 OE2 REMARK 470 TYR A 365 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 373 OG REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 VAL A 382 CG1 CG2 REMARK 470 SER A 383 OG REMARK 470 THR A 385 OG1 CG2 REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 LEU A 387 CG CD1 CD2 REMARK 470 ASP A 389 CG OD1 OD2 REMARK 470 LEU A 390 CG CD1 CD2 REMARK 470 LEU A 517 CG CD1 CD2 REMARK 470 HIS A 519 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 92 170.81 177.99 REMARK 500 SER H 149 44.39 -91.47 REMARK 500 ASP H 163 62.38 60.17 REMARK 500 THR H 179 -34.79 -132.82 REMARK 500 ALA L 52 -43.20 76.08 REMARK 500 ALA L 85 -174.47 -179.07 REMARK 500 TYR L 92 33.75 -149.73 REMARK 500 ASP L 153 38.93 71.40 REMARK 500 ASN L 154 39.99 70.22 REMARK 500 ASN A 360 72.90 42.63 REMARK 500 PHE A 400 -170.37 -173.11 REMARK 500 ASP A 405 -8.71 -58.85 REMARK 500 ASN A 422 -55.60 -125.77 REMARK 500 PHE A 464 15.11 58.87 REMARK 500 THR A 470 46.67 -141.59 REMARK 500 HIS A 519 29.70 -78.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7MZF RELATED DB: PDB REMARK 900 RELATED ID: 7MZG RELATED DB: PDB REMARK 900 RELATED ID: 7MZH RELATED DB: PDB REMARK 900 RELATED ID: 7MZI RELATED DB: PDB REMARK 900 RELATED ID: 7MZJ RELATED DB: PDB REMARK 900 RELATED ID: 7MZK RELATED DB: PDB REMARK 900 RELATED ID: 7MZL RELATED DB: PDB DBREF 7MZM H 1 239 PDB 7MZM 7MZM 1 239 DBREF 7MZM L 1 216 PDB 7MZM 7MZM 1 216 DBREF 7MZM A 331 527 UNP P0DTC2 SPIKE_SARS2 331 527 SEQADV 7MZM GLY A 528 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM SER A 529 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM HIS A 530 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM HIS A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7MZM HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQRES 1 H 239 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 239 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 239 PHE THR PHE SER ASP TYR TYR MET SER TRP ILE ARG GLN SEQRES 4 H 239 ALA PRO GLY LYS GLY PRO GLU TRP VAL SER TYR ILE SER SEQRES 5 H 239 GLY GLY SER SER PHE THR ASN TYR ALA ASP SER VAL GLN SEQRES 6 H 239 GLY ARG PHE THR ILE TYR ARG ASP ASN ALA LYS ASN SER SEQRES 7 H 239 MET PHE LEU ARG MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 239 ALA VAL TYR TYR CYS ALA ARG SER PRO PRO THR GLY ASP SEQRES 9 H 239 SER SER ASP TRP TYR ASP SER PRO ALA TYR ASN ASN TYR SEQRES 10 H 239 TYR MET ASP VAL TRP GLY LYS GLY THR THR VAL THR VAL SEQRES 11 H 239 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 12 H 239 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 13 H 239 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 14 H 239 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 15 H 239 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 16 H 239 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 17 H 239 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 18 H 239 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 19 H 239 CYS ASP LYS THR HIS SEQRES 1 L 216 GLU ILE VAL LEU THR GLN SER PRO VAL THR LEU SER LEU SEQRES 2 L 216 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 216 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 216 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 216 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 216 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 216 TYR GLY THR SER PRO THR VAL THR PHE GLY GLN GLY THR SEQRES 9 L 216 ARG LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 L 216 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 L 216 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 L 216 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 L 216 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 L 216 CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR SEQRES 17 L 216 LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 A 205 ASN ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN SEQRES 2 A 205 ALA THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS SEQRES 3 A 205 ARG ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR SEQRES 4 A 205 ASN SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SEQRES 5 A 205 SER PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL SEQRES 6 A 205 TYR ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG SEQRES 7 A 205 GLN ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR SEQRES 8 A 205 ASN TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE SEQRES 9 A 205 ALA TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY SEQRES 10 A 205 ASN TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN SEQRES 11 A 205 LEU LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR SEQRES 12 A 205 GLN ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE SEQRES 13 A 205 ASN CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO SEQRES 14 A 205 THR ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL SEQRES 15 A 205 LEU SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS SEQRES 16 A 205 GLY PRO GLY SER HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET FUC B 2 10 HET IPA A 601 12 HET IPA A 602 12 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM IPA ISOPROPYL ALCOHOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN IPA 2-PROPANOL FORMUL 4 NAG C8 H15 N O6 FORMUL 4 FUC C6 H12 O5 FORMUL 5 IPA 2(C3 H8 O) FORMUL 7 HOH *107(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 62 GLN H 65 5 4 HELIX 3 AA3 ASN H 74 LYS H 76 5 3 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 175 ALA H 177 5 3 HELIX 6 AA6 SER H 206 LEU H 208 5 3 HELIX 7 AA7 LYS H 220 ASN H 223 5 4 HELIX 8 AA8 SER L 30 SER L 32 5 3 HELIX 9 AA9 GLU L 80 PHE L 84 5 5 HELIX 10 AB1 SER L 123 GLY L 130 1 8 HELIX 11 AB2 LYS L 185 LYS L 190 1 6 HELIX 12 AB3 PRO A 337 ASN A 343 1 7 HELIX 13 AB4 SER A 349 TRP A 353 5 5 HELIX 14 AB5 ASP A 364 ASN A 370 1 7 HELIX 15 AB6 SER A 383 ASP A 389 1 7 HELIX 16 AB7 ASP A 405 ILE A 410 5 6 HELIX 17 AB8 GLY A 416 ASN A 422 1 7 HELIX 18 AB9 SER A 438 SER A 443 1 6 HELIX 19 AC1 GLY A 502 TYR A 505 5 4 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA1 4 SER H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA1 4 PHE H 68 ASP H 73 -1 N TYR H 71 O PHE H 80 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 THR H 126 VAL H 130 1 O THR H 129 N VAL H 12 SHEET 3 AA2 6 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 126 SHEET 4 AA2 6 TYR H 33 GLN H 39 -1 N ILE H 37 O TYR H 95 SHEET 5 AA2 6 PRO H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 58 TYR H 60 -1 O ASN H 59 N TYR H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 THR H 126 VAL H 130 1 O THR H 129 N VAL H 12 SHEET 3 AA3 4 ALA H 92 SER H 99 -1 N TYR H 94 O THR H 126 SHEET 4 AA3 4 VAL H 121 TRP H 122 -1 O VAL H 121 N ARG H 98 SHEET 1 AA4 4 SER H 139 LEU H 143 0 SHEET 2 AA4 4 THR H 154 TYR H 164 -1 O LYS H 162 N SER H 139 SHEET 3 AA4 4 TYR H 195 PRO H 204 -1 O LEU H 197 N VAL H 161 SHEET 4 AA4 4 VAL H 182 THR H 184 -1 N HIS H 183 O VAL H 200 SHEET 1 AA5 4 THR H 150 SER H 151 0 SHEET 2 AA5 4 THR H 154 TYR H 164 -1 O THR H 154 N SER H 151 SHEET 3 AA5 4 TYR H 195 PRO H 204 -1 O LEU H 197 N VAL H 161 SHEET 4 AA5 4 VAL H 188 LEU H 189 -1 N VAL H 188 O SER H 196 SHEET 1 AA6 3 THR H 170 TRP H 173 0 SHEET 2 AA6 3 ILE H 214 HIS H 219 -1 O ASN H 216 N SER H 172 SHEET 3 AA6 3 THR H 224 LYS H 229 -1 O LYS H 228 N CYS H 215 SHEET 1 AA7 3 LEU L 4 SER L 7 0 SHEET 2 AA7 3 ALA L 19 VAL L 29 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 3 PHE L 63 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 1 AA8 6 THR L 10 LEU L 13 0 SHEET 2 AA8 6 THR L 104 ILE L 108 1 O ARG L 105 N LEU L 11 SHEET 3 AA8 6 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 104 SHEET 4 AA8 6 LEU L 34 GLN L 39 -1 N ALA L 35 O GLN L 90 SHEET 5 AA8 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AA8 6 SER L 54 ARG L 55 -1 O SER L 54 N TYR L 50 SHEET 1 AA9 4 THR L 10 LEU L 13 0 SHEET 2 AA9 4 THR L 104 ILE L 108 1 O ARG L 105 N LEU L 11 SHEET 3 AA9 4 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 104 SHEET 4 AA9 4 THR L 99 PHE L 100 -1 O THR L 99 N GLN L 91 SHEET 1 AB1 4 SER L 116 PHE L 120 0 SHEET 2 AB1 4 THR L 131 PHE L 141 -1 O LEU L 137 N PHE L 118 SHEET 3 AB1 4 TYR L 175 SER L 184 -1 O TYR L 175 N PHE L 141 SHEET 4 AB1 4 SER L 161 VAL L 165 -1 N GLN L 162 O THR L 180 SHEET 1 AB2 3 LYS L 147 VAL L 152 0 SHEET 2 AB2 3 VAL L 193 THR L 199 -1 O GLU L 197 N GLN L 149 SHEET 3 AB2 3 VAL L 207 ASN L 212 -1 O VAL L 207 N VAL L 198 SHEET 1 AB3 5 ASN A 354 ILE A 358 0 SHEET 2 AB3 5 ASN A 394 ARG A 403 -1 O ALA A 397 N LYS A 356 SHEET 3 AB3 5 PRO A 507 GLU A 516 -1 O TYR A 508 N ILE A 402 SHEET 4 AB3 5 GLY A 431 ASN A 437 -1 N CYS A 432 O LEU A 513 SHEET 5 AB3 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AB4 2 LEU A 452 ARG A 454 0 SHEET 2 AB4 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AB5 2 TYR A 473 GLN A 474 0 SHEET 2 AB5 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 2 CYS H 159 CYS H 215 1555 1555 2.02 SSBOND 3 CYS L 23 CYS L 89 1555 1555 2.06 SSBOND 4 CYS L 136 CYS L 196 1555 1555 2.02 SSBOND 5 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 6 CYS A 379 CYS A 432 1555 1555 2.04 SSBOND 7 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 8 CYS A 480 CYS A 488 1555 1555 2.04 LINK ND2 ASN A 343 C1 NAG B 1 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 2 1555 1555 1.44 CISPEP 1 PHE H 165 PRO H 166 0 -6.52 CISPEP 2 GLU H 167 PRO H 168 0 -3.53 CISPEP 3 SER L 7 PRO L 8 0 -6.28 CISPEP 4 TYR L 142 PRO L 143 0 2.18 CRYST1 95.801 120.325 128.358 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010438 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007791 0.00000