HEADER IMMUNE SYSTEM 25-MAY-21 7N04 TITLE CRYSTAL STRUCTURE OF THE APO F240 ANTIBODY FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB F240 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB F240 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293T KEYWDS ANTIBODY, FAB, ANTI-HIV, GP41, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.D.COOK,J.E.LEE REVDAT 3 18-OCT-23 7N04 1 REMARK REVDAT 2 13-APR-22 7N04 1 JRNL REVDAT 1 30-MAR-22 7N04 0 JRNL AUTH J.D.COOK,A.KHONDKER,J.E.LEE JRNL TITL CONFORMATIONAL PLASTICITY OF THE HIV-1 GP41 IMMUNODOMINANT JRNL TITL 2 REGION IS RECOGNIZED BY MULTIPLE NON-NEUTRALIZING JRNL TITL 3 ANTIBODIES. JRNL REF COMMUN BIOL V. 5 291 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35361878 JRNL DOI 10.1038/S42003-022-03235-W REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.345 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 54919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.638 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7076 - 4.0963 1.00 4184 158 0.1561 0.1934 REMARK 3 2 4.0963 - 3.2516 1.00 3979 150 0.1584 0.1946 REMARK 3 3 3.2516 - 2.8407 1.00 3950 150 0.1753 0.2100 REMARK 3 4 2.8407 - 2.5810 1.00 3935 149 0.1802 0.2508 REMARK 3 5 2.5810 - 2.3960 1.00 3901 146 0.1800 0.2378 REMARK 3 6 2.3960 - 2.2547 1.00 3899 147 0.1757 0.2020 REMARK 3 7 2.2547 - 2.1418 1.00 3874 146 0.1826 0.2326 REMARK 3 8 2.1418 - 2.0486 1.00 3881 148 0.1780 0.2134 REMARK 3 9 2.0486 - 1.9697 1.00 3880 146 0.1744 0.2232 REMARK 3 10 1.9697 - 1.9018 1.00 3857 145 0.2286 0.2845 REMARK 3 11 1.9018 - 1.8423 1.00 3872 146 0.2363 0.2785 REMARK 3 12 1.8423 - 1.7896 0.93 3560 135 0.2688 0.3083 REMARK 3 13 1.7896 - 1.7425 0.84 3219 121 0.3090 0.3622 REMARK 3 14 1.7425 - 1.7000 0.75 2930 111 0.3536 0.3946 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.225 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.983 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3505 REMARK 3 ANGLE : 1.064 4776 REMARK 3 CHIRALITY : 0.062 541 REMARK 3 PLANARITY : 0.007 610 REMARK 3 DIHEDRAL : 14.376 1267 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3610 43.6014 51.6250 REMARK 3 T TENSOR REMARK 3 T11: 0.1485 T22: 0.1786 REMARK 3 T33: 0.1893 T12: 0.0500 REMARK 3 T13: 0.0588 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 4.9109 L22: 5.0739 REMARK 3 L33: 5.7388 L12: -2.4715 REMARK 3 L13: 1.5878 L23: -2.0146 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.1342 S13: -0.4828 REMARK 3 S21: 0.0649 S22: 0.2100 S23: 0.4331 REMARK 3 S31: 0.1299 S32: -0.3671 S33: -0.3660 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 18 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1982 47.6958 60.4862 REMARK 3 T TENSOR REMARK 3 T11: 0.3370 T22: 0.2867 REMARK 3 T33: 0.2057 T12: 0.1432 REMARK 3 T13: 0.0765 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 3.2240 L22: 2.3547 REMARK 3 L33: 2.9410 L12: -0.5612 REMARK 3 L13: 0.2440 L23: -0.4869 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: -0.5130 S13: -0.0021 REMARK 3 S21: 0.3018 S22: 0.1407 S23: 0.2110 REMARK 3 S31: -0.1241 S32: -0.1901 S33: -0.0353 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 88 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0941 43.4264 62.2256 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.3356 REMARK 3 T33: 0.1809 T12: 0.1540 REMARK 3 T13: 0.0770 T23: 0.0416 REMARK 3 L TENSOR REMARK 3 L11: 4.6279 L22: 2.2760 REMARK 3 L33: 2.0533 L12: -0.9577 REMARK 3 L13: 2.1790 L23: -1.8627 REMARK 3 S TENSOR REMARK 3 S11: -0.1485 S12: -0.7702 S13: -0.2195 REMARK 3 S21: 0.5756 S22: 0.1982 S23: 0.2156 REMARK 3 S31: -0.0807 S32: -0.0382 S33: 0.2951 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 100 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1686 44.3816 67.3745 REMARK 3 T TENSOR REMARK 3 T11: 0.4125 T22: 0.4414 REMARK 3 T33: 0.2213 T12: 0.1382 REMARK 3 T13: 0.0617 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 3.9389 L22: 1.8659 REMARK 3 L33: 5.2540 L12: -1.2523 REMARK 3 L13: 0.0424 L23: -0.1638 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: -0.8492 S13: 0.1785 REMARK 3 S21: 0.3876 S22: 0.1715 S23: -0.2128 REMARK 3 S31: -0.3781 S32: 0.0666 S33: 0.0490 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 104 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3144 48.1840 40.9144 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.2202 REMARK 3 T33: 0.2615 T12: 0.0755 REMARK 3 T13: 0.0268 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4708 L22: 0.5156 REMARK 3 L33: 2.2984 L12: 0.4916 REMARK 3 L13: -0.4093 L23: -0.1676 REMARK 3 S TENSOR REMARK 3 S11: -0.2128 S12: 0.0425 S13: 0.0127 REMARK 3 S21: 0.3856 S22: 0.0740 S23: 0.2394 REMARK 3 S31: -0.0500 S32: -0.2051 S33: 0.1494 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 120 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.2827 40.2088 25.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1338 REMARK 3 T33: 0.1608 T12: -0.0232 REMARK 3 T13: 0.0116 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.2129 L22: 3.1495 REMARK 3 L33: 2.8146 L12: -0.6134 REMARK 3 L13: -0.7488 L23: 0.2858 REMARK 3 S TENSOR REMARK 3 S11: -0.0603 S12: 0.1249 S13: -0.0486 REMARK 3 S21: -0.2192 S22: 0.0597 S23: -0.0927 REMARK 3 S31: 0.1625 S32: -0.0534 S33: -0.0056 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 189 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6950 33.8070 23.4000 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.2053 REMARK 3 T33: 0.2346 T12: -0.0568 REMARK 3 T13: 0.0534 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.4939 L22: 2.1075 REMARK 3 L33: 1.7410 L12: 0.9904 REMARK 3 L13: 1.4788 L23: 0.9056 REMARK 3 S TENSOR REMARK 3 S11: -0.0534 S12: 0.2943 S13: -0.1939 REMARK 3 S21: -0.3822 S22: 0.1205 S23: 0.1182 REMARK 3 S31: 0.1651 S32: -0.1704 S33: 0.4739 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 204 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9001 37.2222 12.9410 REMARK 3 T TENSOR REMARK 3 T11: 0.3287 T22: 0.3962 REMARK 3 T33: 0.2852 T12: -0.0723 REMARK 3 T13: -0.0447 T23: -0.0685 REMARK 3 L TENSOR REMARK 3 L11: 0.7394 L22: 1.6595 REMARK 3 L33: 8.6813 L12: -0.6559 REMARK 3 L13: 0.6076 L23: 1.7514 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: 0.5613 S13: -0.3051 REMARK 3 S21: -0.5437 S22: -0.0093 S23: 0.3762 REMARK 3 S31: -0.4039 S32: -0.1212 S33: -0.1014 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 3 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8207 44.8778 49.5597 REMARK 3 T TENSOR REMARK 3 T11: 0.2928 T22: 0.2018 REMARK 3 T33: 0.2471 T12: 0.0032 REMARK 3 T13: -0.0114 T23: 0.0201 REMARK 3 L TENSOR REMARK 3 L11: 5.0126 L22: 3.5151 REMARK 3 L33: 3.5406 L12: -3.5824 REMARK 3 L13: -3.4030 L23: 3.2619 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: -0.0163 S13: 0.3188 REMARK 3 S21: 0.3003 S22: 0.0662 S23: -0.4423 REMARK 3 S31: -0.3648 S32: 0.3206 S33: -0.2566 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 26 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.2443 49.0484 71.0711 REMARK 3 T TENSOR REMARK 3 T11: 0.5032 T22: 0.3482 REMARK 3 T33: 0.2311 T12: 0.1044 REMARK 3 T13: -0.1128 T23: -0.1340 REMARK 3 L TENSOR REMARK 3 L11: 6.7153 L22: 5.2112 REMARK 3 L33: 4.2375 L12: 5.3956 REMARK 3 L13: -4.1719 L23: -4.4855 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: -0.6888 S13: 0.5641 REMARK 3 S21: 0.6045 S22: 0.0438 S23: -0.2000 REMARK 3 S31: -1.0776 S32: 0.3501 S33: -0.1113 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 33 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4440 39.0173 53.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.2045 REMARK 3 T33: 0.1670 T12: 0.0711 REMARK 3 T13: 0.0191 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 4.8902 L22: 1.5550 REMARK 3 L33: 4.4876 L12: -0.2472 REMARK 3 L13: 4.4211 L23: -1.0334 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: 0.0514 S13: -0.3224 REMARK 3 S21: 0.1151 S22: 0.1303 S23: 0.1141 REMARK 3 S31: 0.0248 S32: -0.0853 S33: -0.2343 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 49 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.9583 38.1381 60.3448 REMARK 3 T TENSOR REMARK 3 T11: 0.2211 T22: 0.2111 REMARK 3 T33: 0.1895 T12: 0.0757 REMARK 3 T13: -0.0609 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 3.9666 L22: 4.4329 REMARK 3 L33: 4.9120 L12: -0.3230 REMARK 3 L13: -1.1225 L23: 1.1333 REMARK 3 S TENSOR REMARK 3 S11: -0.2845 S12: -0.3293 S13: 0.0275 REMARK 3 S21: 0.3220 S22: 0.1848 S23: -0.1847 REMARK 3 S31: -0.1228 S32: 0.2809 S33: 0.1079 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 76 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4582 42.4710 49.4596 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.1656 REMARK 3 T33: 0.1873 T12: 0.0566 REMARK 3 T13: 0.0112 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.3579 L22: 1.2660 REMARK 3 L33: 3.0326 L12: -0.3921 REMARK 3 L13: 0.6068 L23: -0.9079 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: 0.0568 S13: 0.1601 REMARK 3 S21: 0.1265 S22: -0.0449 S23: -0.3033 REMARK 3 S31: -0.1811 S32: -0.0913 S33: -0.0579 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 114 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4962 46.6230 15.0122 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.2734 REMARK 3 T33: 0.2223 T12: -0.0549 REMARK 3 T13: -0.0303 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.2622 L22: 2.1934 REMARK 3 L33: 4.8953 L12: 1.5281 REMARK 3 L13: 0.9023 L23: -0.4380 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.6224 S13: -0.0197 REMARK 3 S21: -0.4127 S22: 0.1073 S23: 0.4261 REMARK 3 S31: 0.3486 S32: -0.4667 S33: -0.1887 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 129 THROUGH 150 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1739 48.0024 23.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.0857 T22: 0.1921 REMARK 3 T33: 0.1272 T12: 0.0067 REMARK 3 T13: 0.0544 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 4.6145 L22: 6.1800 REMARK 3 L33: 5.3812 L12: -4.4978 REMARK 3 L13: 4.4977 L23: -4.4444 REMARK 3 S TENSOR REMARK 3 S11: -0.2341 S12: -0.1735 S13: 0.0968 REMARK 3 S21: -0.0405 S22: 0.0024 S23: -0.3114 REMARK 3 S31: -0.0371 S32: 0.2681 S33: 0.2263 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 151 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6454 56.4769 21.7177 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.2143 REMARK 3 T33: 0.2745 T12: -0.0435 REMARK 3 T13: 0.0084 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.5496 L22: 9.0868 REMARK 3 L33: 4.4188 L12: 0.5467 REMARK 3 L13: 0.0602 L23: -6.2368 REMARK 3 S TENSOR REMARK 3 S11: -0.0285 S12: 0.0343 S13: 0.2082 REMARK 3 S21: -0.1474 S22: -0.0132 S23: 0.0250 REMARK 3 S31: -0.1558 S32: 0.3593 S33: 0.1753 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 164 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9248 48.6009 21.2874 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.1057 REMARK 3 T33: 0.1535 T12: -0.0314 REMARK 3 T13: 0.0115 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 3.5194 L22: 4.4189 REMARK 3 L33: 7.8347 L12: -2.6322 REMARK 3 L13: 3.2513 L23: -4.3692 REMARK 3 S TENSOR REMARK 3 S11: -0.0696 S12: -0.0237 S13: -0.0303 REMARK 3 S21: -0.2319 S22: 0.1712 S23: 0.1140 REMARK 3 S31: 0.0647 S32: 0.0470 S33: -0.0787 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 198 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3038 48.0739 14.3226 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.4218 REMARK 3 T33: 0.1515 T12: 0.0100 REMARK 3 T13: 0.1402 T23: 0.0301 REMARK 3 L TENSOR REMARK 3 L11: 7.9561 L22: 3.9480 REMARK 3 L33: 4.7019 L12: -2.4156 REMARK 3 L13: 3.8450 L23: -1.6917 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.4539 S13: 0.1648 REMARK 3 S21: -0.6854 S22: -0.3265 S23: -0.2535 REMARK 3 S31: 0.0873 S32: 1.2063 S33: -0.2616 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N04 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54928 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.05600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-NAOH, PH 7.5, AND 20% REMARK 280 (W/V) PEG 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.49800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.52050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.19100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.52050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.49800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.19100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 PRO H 221 REMARK 465 ARG H 222 REMARK 465 GLY H 223 REMARK 465 SER H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 GLU L 1 REMARK 465 PHE L 2 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 100A CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 519 O HOH L 553 1.92 REMARK 500 O HOH H 443 O HOH H 459 1.99 REMARK 500 O HOH H 446 O HOH H 467 2.04 REMARK 500 O VAL L 110 O HOH L 401 2.11 REMARK 500 O HOH H 391 O HOH H 437 2.16 REMARK 500 O HOH L 501 O HOH L 558 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 58.35 70.94 REMARK 500 LEU H 219 -72.83 -87.28 REMARK 500 ALA L 51 -32.61 65.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N04 H 1 234 PDB 7N04 7N04 1 234 DBREF 7N04 L 1 214 PDB 7N04 7N04 1 214 SEQRES 1 H 246 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL LYS SEQRES 2 H 246 PRO GLY ALA SER LEU ARG LEU ALA CYS SER ALA SER GLY SEQRES 3 H 246 PHE THR PHE THR ASP TYR TYR MET SER TRP ILE ARG GLN SEQRES 4 H 246 THR PRO GLY LYS GLY LEU GLN TRP LEU ALA TYR ILE THR SEQRES 5 H 246 LYS ASP GLY SER GLU LYS LYS TYR ALA ASP SER LEU GLN SEQRES 6 H 246 GLY ARG PHE ALA VAL SER ARG ASP ASN ALA ASN ASN LEU SEQRES 7 H 246 VAL PHE LEU GLN LEU ASN THR VAL GLU ASP ASP ASP THR SEQRES 8 H 246 GLY VAL TYR TYR CYS ALA ARG ASP ASP GLY TYR TYR ASP SEQRES 9 H 246 ARG SER GLY TYR TYR GLY VAL PHE ASP LEU TRP GLY GLN SEQRES 10 H 246 GLY ILE ARG VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 246 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 246 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 246 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 246 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 246 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 246 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 246 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 246 LYS VAL GLU PRO LYS SER CYS GLY ARG LEU VAL PRO ARG SEQRES 19 H 246 GLY SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 L 220 GLU PHE LEU LEU THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 THR LEU GLY GLU THR ALA THR ILE THR CYS ARG SER SER SEQRES 3 L 220 ARG ASN ILE LEU HIS SER LEU ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN ARG PRO GLY GLN ALA PRO LYS LEU SEQRES 5 L 220 LEU VAL ILE TRP ALA SER MET ARG VAL SER GLY VAL ALA SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE ALA SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN PRO GLU ASP ALA ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN HIS TYR TYR THR THR HIS ARG THR PHE SEQRES 9 L 220 GLY GLN GLY THR ARG VAL GLU ILE ARG ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET GLC L 301 24 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC C6 H12 O6 FORMUL 4 HOH *341(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 61 GLN H 64 5 4 HELIX 3 AA3 ASN H 73 ASN H 75 5 3 HELIX 4 AA4 GLU H 83 THR H 87 5 5 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 GLN L 79 ALA L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 GLN H 3 GLY H 8 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 23 N VAL H 5 SHEET 3 AA1 4 LEU H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 ILE H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 GLY H 88 TYR H 99 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 TYR H 33 THR H 40 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 AA2 6 LYS H 57 TYR H 59 -1 O LYS H 58 N TYR H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 ILE H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 GLY H 88 TYR H 99 -1 N GLY H 88 O VAL H 109 SHEET 4 AA3 4 TYR H 100D TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O ARG L 103 N LEU L 11 SHEET 3 AA8 6 ALA L 84 HIS L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 AA8 6 LYS L 45 ILE L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 MET L 53 ARG L 54 -1 O MET L 53 N ILE L 49 SHEET 1 AA9 4 SER L 10 VAL L 13 0 SHEET 2 AA9 4 THR L 102 ILE L 106 1 O ARG L 103 N LEU L 11 SHEET 3 AA9 4 ALA L 84 HIS L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N HIS L 90 SHEET 1 AB1 2 LEU L 27C HIS L 27D 0 SHEET 2 AB1 2 LYS L 30 ASN L 31 -1 O LYS L 30 N HIS L 27D SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O SER L 177 N CYS L 134 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.07 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.13 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.14 CISPEP 1 PHE H 146 PRO H 147 0 -7.38 CISPEP 2 GLU H 148 PRO H 149 0 3.68 CISPEP 3 SER L 7 PRO L 8 0 -6.76 CISPEP 4 TYR L 140 PRO L 141 0 3.48 CRYST1 46.996 74.382 145.041 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013444 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006895 0.00000