HEADER IMMUNE SYSTEM 25-MAY-21 7N05 TITLE CRYSTAL STRUCTURE OF THE F240 ANTIBODY FRAGMENT BOUND TO THE HIV-1 TITLE 2 GP41 IMMUNODOMINANT REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB F240 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB F240 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIV-1 GP41 IMMUNODOMINANT REGION; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HIV-1 06TG.HT008; SOURCE 18 ORGANISM_TAXID: 587638 KEYWDS ANTIBODY, FAB, ANTI-HIV, GP41, IMMUNODOMINANT DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.D.COOK,J.E.LEE REVDAT 3 18-OCT-23 7N05 1 REMARK REVDAT 2 13-APR-22 7N05 1 JRNL REVDAT 1 30-MAR-22 7N05 0 JRNL AUTH J.D.COOK,A.KHONDKER,J.E.LEE JRNL TITL CONFORMATIONAL PLASTICITY OF THE HIV-1 GP41 IMMUNODOMINANT JRNL TITL 2 REGION IS RECOGNIZED BY MULTIPLE NON-NEUTRALIZING JRNL TITL 3 ANTIBODIES. JRNL REF COMMUN BIOL V. 5 291 2022 JRNL REFN ESSN 2399-3642 JRNL PMID 35361878 JRNL DOI 10.1038/S42003-022-03235-W REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 66223 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.6970 - 4.0964 1.00 5041 157 0.1531 0.1806 REMARK 3 2 4.0964 - 3.2517 1.00 4822 150 0.1413 0.1815 REMARK 3 3 3.2517 - 2.8407 1.00 4773 149 0.1587 0.1612 REMARK 3 4 2.8407 - 2.5810 1.00 4738 148 0.1664 0.2082 REMARK 3 5 2.5810 - 2.3961 1.00 4726 147 0.1727 0.2113 REMARK 3 6 2.3961 - 2.2548 1.00 4717 146 0.1674 0.2163 REMARK 3 7 2.2548 - 2.1419 1.00 4703 147 0.1720 0.2174 REMARK 3 8 2.1419 - 2.0486 1.00 4683 145 0.1755 0.1983 REMARK 3 9 2.0486 - 1.9698 1.00 4672 146 0.1886 0.2292 REMARK 3 10 1.9698 - 1.9018 1.00 4668 146 0.2066 0.2457 REMARK 3 11 1.9018 - 1.8423 1.00 4636 144 0.2370 0.2451 REMARK 3 12 1.8423 - 1.7897 0.96 4499 140 0.2896 0.3347 REMARK 3 13 1.7897 - 1.7425 0.86 3989 124 0.3374 0.3920 REMARK 3 14 1.7425 - 1.7000 0.77 3556 111 0.3679 0.3734 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3596 REMARK 3 ANGLE : 1.066 4896 REMARK 3 CHIRALITY : 0.062 547 REMARK 3 PLANARITY : 0.007 626 REMARK 3 DIHEDRAL : 12.413 2121 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.429 19.751 -25.818 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1645 REMARK 3 T33: 0.2430 T12: -0.0274 REMARK 3 T13: 0.0362 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.2535 L22: 3.6840 REMARK 3 L33: 6.2781 L12: -2.0137 REMARK 3 L13: -2.3105 L23: 3.4550 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.0952 S13: -0.2367 REMARK 3 S21: -0.0844 S22: -0.2102 S23: 0.3783 REMARK 3 S31: -0.0674 S32: -0.3043 S33: 0.1690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 34:87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.496 16.777 -17.596 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.2401 REMARK 3 T33: 0.2611 T12: 0.0597 REMARK 3 T13: 0.0988 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 2.7558 L22: 2.7928 REMARK 3 L33: 3.2514 L12: -0.5714 REMARK 3 L13: -0.8205 L23: 1.2262 REMARK 3 S TENSOR REMARK 3 S11: -0.2130 S12: -0.4321 S13: -0.3731 REMARK 3 S21: 0.4898 S22: 0.0903 S23: 0.1651 REMARK 3 S31: 0.3729 S32: 0.2412 S33: 0.0726 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 88:188 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.381 39.421 -20.721 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.1944 REMARK 3 T33: 0.1316 T12: 0.0087 REMARK 3 T13: -0.0198 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.8768 L22: 1.3405 REMARK 3 L33: 0.5920 L12: -0.3253 REMARK 3 L13: 0.1212 L23: 0.1156 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: -0.0936 S13: 0.0588 REMARK 3 S21: 0.0628 S22: -0.0104 S23: 0.0428 REMARK 3 S31: -0.0630 S32: -0.0451 S33: 0.1161 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN H AND RESID 189:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.424 54.792 -23.453 REMARK 3 T TENSOR REMARK 3 T11: 0.2085 T22: 0.2813 REMARK 3 T33: 0.2859 T12: 0.0430 REMARK 3 T13: -0.0847 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 5.2262 L22: 6.3821 REMARK 3 L33: 5.0787 L12: 3.2881 REMARK 3 L13: -1.4614 L23: -3.5361 REMARK 3 S TENSOR REMARK 3 S11: -0.0768 S12: -0.0212 S13: 0.6525 REMARK 3 S21: 0.0738 S22: 0.2827 S23: 0.6168 REMARK 3 S31: -0.3670 S32: -0.5599 S33: -0.1514 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN L AND RESID 2:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.486 33.033 -23.185 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.2267 REMARK 3 T33: 0.2379 T12: -0.0117 REMARK 3 T13: -0.0278 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.8789 L22: 7.5435 REMARK 3 L33: 5.0154 L12: -2.0968 REMARK 3 L13: 1.9744 L23: -1.7412 REMARK 3 S TENSOR REMARK 3 S11: -0.0461 S12: -0.0527 S13: 0.0751 REMARK 3 S21: 0.4289 S22: 0.0494 S23: -0.3946 REMARK 3 S31: -0.2200 S32: 0.0695 S33: 0.0180 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN L AND RESID 19:32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.464 16.431 -23.834 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.2326 REMARK 3 T33: 0.2881 T12: 0.0306 REMARK 3 T13: 0.0243 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 3.9778 L22: 3.1734 REMARK 3 L33: 2.6804 L12: -1.2884 REMARK 3 L13: 0.2026 L23: -0.3263 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.2479 S13: -0.3339 REMARK 3 S21: 0.4581 S22: -0.0617 S23: -0.6983 REMARK 3 S31: 0.1614 S32: 0.0952 S33: 0.0459 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN L AND RESID 33:48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.049 27.746 -29.034 REMARK 3 T TENSOR REMARK 3 T11: 0.1406 T22: 0.1215 REMARK 3 T33: 0.1653 T12: -0.0134 REMARK 3 T13: 0.0184 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 7.4163 L22: 4.9041 REMARK 3 L33: 7.4903 L12: -3.9005 REMARK 3 L13: -3.7442 L23: 4.5519 REMARK 3 S TENSOR REMARK 3 S11: -0.0387 S12: 0.1632 S13: 0.0959 REMARK 3 S21: -0.1612 S22: -0.1519 S23: 0.1709 REMARK 3 S31: -0.1994 S32: -0.2591 S33: 0.2125 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN L AND RESID 49:128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.438 34.577 -24.712 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.1789 REMARK 3 T33: 0.1456 T12: -0.0105 REMARK 3 T13: -0.0139 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.8536 L22: 2.4641 REMARK 3 L33: 0.9245 L12: -0.3080 REMARK 3 L13: -0.0500 L23: 0.4398 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.0026 S13: 0.0357 REMARK 3 S21: -0.0449 S22: -0.0847 S23: -0.2174 REMARK 3 S31: -0.0034 S32: -0.0194 S33: 0.0647 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN L AND RESID 129:150 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.411 54.292 -12.723 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.2158 REMARK 3 T33: 0.2551 T12: -0.0079 REMARK 3 T13: -0.0832 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 4.1980 L22: 1.7474 REMARK 3 L33: 4.3491 L12: -2.4538 REMARK 3 L13: -3.4664 L23: 2.1506 REMARK 3 S TENSOR REMARK 3 S11: -0.2183 S12: -0.1344 S13: 0.1254 REMARK 3 S21: 0.2275 S22: -0.0079 S23: -0.0659 REMARK 3 S31: -0.0857 S32: 0.0182 S33: 0.1833 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN L AND RESID 151:212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.818 56.761 -9.324 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2316 REMARK 3 T33: 0.2258 T12: 0.0287 REMARK 3 T13: -0.1279 T23: -0.0766 REMARK 3 L TENSOR REMARK 3 L11: 1.3504 L22: 2.1354 REMARK 3 L33: 3.6192 L12: -0.4170 REMARK 3 L13: -0.7587 L23: 1.2998 REMARK 3 S TENSOR REMARK 3 S11: -0.1068 S12: -0.1667 S13: 0.2301 REMARK 3 S21: 0.2071 S22: -0.1036 S23: -0.1404 REMARK 3 S31: -0.3378 S32: -0.1173 S33: -0.0180 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN E AND RESID 596:603 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.445 7.975 -34.026 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.1826 REMARK 3 T33: 0.2735 T12: 0.0648 REMARK 3 T13: 0.0273 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 5.7541 L22: 3.7896 REMARK 3 L33: 6.0749 L12: 2.3922 REMARK 3 L13: -1.9157 L23: 3.1010 REMARK 3 S TENSOR REMARK 3 S11: 0.1889 S12: 0.4641 S13: 0.2855 REMARK 3 S21: -0.1569 S22: -0.1499 S23: 0.1678 REMARK 3 S31: -0.2305 S32: 0.1151 S33: -0.0433 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: ( CHAIN E AND RESID 604:610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.598 6.307 -36.781 REMARK 3 T TENSOR REMARK 3 T11: 0.4527 T22: 0.3913 REMARK 3 T33: 0.4314 T12: 0.1571 REMARK 3 T13: 0.1439 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 1.1740 L22: 4.6650 REMARK 3 L33: 3.2099 L12: 1.9793 REMARK 3 L13: 1.8901 L23: 3.6565 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.9380 S13: -1.4020 REMARK 3 S21: -0.4335 S22: -0.1460 S23: -1.0005 REMARK 3 S31: 1.1847 S32: 1.0056 S33: -0.3829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000257111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 2.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7N04 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085 M REMARK 280 SODIUM CITRATE-HCL, PH 5.6, 25.5% (W/V) PEG 4000, AND 15% (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.03600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.37400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.03600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.37400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 ARG H 218 REMARK 465 LEU H 219 REMARK 465 VAL H 220 REMARK 465 PRO H 221 REMARK 465 ARG H 222 REMARK 465 GLY H 223 REMARK 465 SER H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 HIS H 231 REMARK 465 HIS H 232 REMARK 465 HIS H 233 REMARK 465 HIS H 234 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 214 CG CD CE NZ REMARK 470 LYS L 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 428 O HOH L 562 1.83 REMARK 500 O HOH E 703 O HOH E 706 1.89 REMARK 500 O HOH H 490 O HOH H 585 2.02 REMARK 500 O HOH H 526 O HOH H 599 2.03 REMARK 500 O HOH H 473 O HOH H 598 2.13 REMARK 500 O HOH L 422 O HOH L 580 2.13 REMARK 500 O HOH L 467 O HOH L 578 2.15 REMARK 500 O HOH L 496 O HOH L 507 2.17 REMARK 500 O HOH L 474 O HOH L 577 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 100 -161.83 -122.55 REMARK 500 ALA L 51 -33.87 67.46 REMARK 500 ASN L 152 -0.11 79.29 REMARK 500 LYS E 601 -12.45 -152.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7N04 RELATED DB: PDB REMARK 900 APO F240 STRUCTURE DBREF 7N05 H 1 234 PDB 7N05 7N05 1 234 DBREF 7N05 L 1 214 PDB 7N05 7N05 1 214 DBREF 7N05 E 595 610 PDB 7N05 7N05 595 610 SEQRES 1 H 246 GLN VAL GLN LEU VAL GLN SER GLY GLY GLY VAL VAL LYS SEQRES 2 H 246 PRO GLY ALA SER LEU ARG LEU ALA CYS SER ALA SER GLY SEQRES 3 H 246 PHE THR PHE THR ASP TYR TYR MET SER TRP ILE ARG GLN SEQRES 4 H 246 THR PRO GLY LYS GLY LEU GLN TRP LEU ALA TYR ILE THR SEQRES 5 H 246 LYS ASP GLY SER GLU LYS LYS TYR ALA ASP SER LEU GLN SEQRES 6 H 246 GLY ARG PHE ALA VAL SER ARG ASP ASN ALA ASN ASN LEU SEQRES 7 H 246 VAL PHE LEU GLN LEU ASN THR VAL GLU ASP ASP ASP THR SEQRES 8 H 246 GLY VAL TYR TYR CYS ALA ARG ASP ASP GLY TYR TYR ASP SEQRES 9 H 246 ARG SER GLY TYR TYR GLY VAL PHE ASP LEU TRP GLY GLN SEQRES 10 H 246 GLY ILE ARG VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 246 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 246 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 246 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 246 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 246 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 246 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 246 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 246 LYS VAL GLU PRO LYS SER CYS GLY ARG LEU VAL PRO ARG SEQRES 19 H 246 GLY SER HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 L 220 GLU PHE LEU LEU THR GLN SER PRO ASP SER LEU ALA VAL SEQRES 2 L 220 THR LEU GLY GLU THR ALA THR ILE THR CYS ARG SER SER SEQRES 3 L 220 ARG ASN ILE LEU HIS SER LEU ASN ASN LYS ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN ARG PRO GLY GLN ALA PRO LYS LEU SEQRES 5 L 220 LEU VAL ILE TRP ALA SER MET ARG VAL SER GLY VAL ALA SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE ALA SEQRES 7 L 220 LEU THR ILE SER SER LEU GLN PRO GLU ASP ALA ALA VAL SEQRES 8 L 220 TYR TYR CYS GLN HIS TYR TYR THR THR HIS ARG THR PHE SEQRES 9 L 220 GLY GLN GLY THR ARG VAL GLU ILE ARG ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 E 16 ACE TRP GLY SER SER GLY LYS LEU ILE SER THR THR ALA SEQRES 2 E 16 VAL PRO TRP HET ACE E 595 3 HET GOL H 301 14 HET ACT H 302 7 HET GOL L 301 13 HETNAM ACE ACETYL GROUP HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE C2 H4 O FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 ACT C2 H3 O2 1- FORMUL 7 HOH *429(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 61 GLN H 64 5 4 HELIX 3 AA3 GLU H 83 THR H 87 5 5 HELIX 4 AA4 SER H 156 ALA H 158 5 3 HELIX 5 AA5 SER H 187 LEU H 189 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLN L 79 ALA L 83 5 5 HELIX 8 AA8 SER L 121 SER L 127 1 7 HELIX 9 AA9 LYS L 183 GLU L 187 1 5 HELIX 10 AB1 ILE E 603 ALA E 607 5 5 SHEET 1 AA1 4 GLN H 3 GLY H 8 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 23 N VAL H 5 SHEET 3 AA1 4 LEU H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 AA2 4 GLY H 10 VAL H 12 0 SHEET 2 AA2 4 ILE H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 4 GLY H 88 ASP H 100 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 4 GLY H 100C TRP H 103 -1 O TYR H 100E N TYR H 98 SHEET 1 AA3 5 LYS H 57 TYR H 59 0 SHEET 2 AA3 5 GLY H 44 ILE H 51 -1 N TYR H 50 O LYS H 58 SHEET 3 AA3 5 TYR H 33 THR H 40 -1 N ARG H 38 O GLN H 46 SHEET 4 AA3 5 GLY H 88 ASP H 100 -1 O TYR H 91 N ILE H 37 SHEET 5 AA3 5 GLY E 597 SER E 599 -1 O SER E 599 N GLY H 97 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 LEU L 4 SER L 7 0 SHEET 2 AA7 4 ALA L 19 SER L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 VAL L 13 0 SHEET 2 AA8 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 84 HIS L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O VAL L 85 SHEET 5 AA8 6 LYS L 45 ILE L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 MET L 53 ARG L 54 -1 O MET L 53 N ILE L 49 SHEET 1 AA9 2 LEU L 27C HIS L 27D 0 SHEET 2 AA9 2 LYS L 30 ASN L 31 -1 O LYS L 30 N HIS L 27D SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LEU L 154 0 SHEET 2 AB2 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.11 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.06 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.16 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.08 LINK C ACE E 595 N TRP E 596 1555 1555 1.34 CISPEP 1 PHE H 146 PRO H 147 0 -8.52 CISPEP 2 GLU H 148 PRO H 149 0 -1.66 CISPEP 3 SER L 7 PRO L 8 0 -7.93 CISPEP 4 TYR L 140 PRO L 141 0 4.46 CRYST1 46.072 168.748 78.367 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021705 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012760 0.00000