HEADER TRANSCRIPTION 28-MAY-21 7N27 TITLE CRYSTAL STRUCTURE OF CHROMODOMAIN OF CDYL IN COMPLEX WITH INHIBITOR TITLE 2 UNC6261 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOFORM 2 OF CHROMODOMAIN Y-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: CDY-LIKE,CROTONYL-COA HYDRATASE; COMPND 5 EC: 4.2.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: INHIBITOR UNC6261; COMPND 9 CHAIN: G, H, I, J, K, L; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDYL, CDYL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS CHROMODOMAIN Y-LIKE PROTEIN, TRANSCRIPTION REGULATION, KEYWDS 2 SPERMATOGENESIS, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.BELDAR,A.DONG,P.LOPPNAU,J.MIN,C.H.ARROWSMITH,A.M.EDWARDS,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 3 15-NOV-23 7N27 1 LINK ATOM REVDAT 2 18-OCT-23 7N27 1 REMARK REVDAT 1 21-JUL-21 7N27 0 JRNL AUTH S.BELDAR,A.DONG,P.LOPPNAU,J.MIN,C.H.ARROWSMITH,A.M.EDWARDS, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF CHROMODOMAIN OF CDYL IN COMPLEX WITH JRNL TITL 2 INHIBITOR UNC6261 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 31770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2054 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3360 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 69 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86000 REMARK 3 B22 (A**2) : -2.27000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.421 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3293 ; 0.014 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2732 ; 0.009 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4469 ; 1.572 ; 1.751 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6304 ; 2.427 ; 1.752 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 6.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;30.616 ;21.971 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;14.239 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;17.014 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3679 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 749 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 4 REMARK 4 7N27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1000256712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6V41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5M NA FORMATE, 0.1M BIS-TRIS PROPANE REMARK 280 PH7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.48550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.31400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.19300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.31400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.48550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.19300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E 57 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 58 OE1 OE2 REMARK 470 GLU A 64 OE1 OE2 REMARK 470 LYS A 69 CE NZ REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 74 CD CE NZ REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 GLN A 97 CD OE1 NE2 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 HIS A 107 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 112 CZ NH1 NH2 REMARK 470 LYS B 71 CE NZ REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LYS B 76 CE NZ REMARK 470 GLU C 58 OE1 OE2 REMARK 470 GLU C 59 CG CD OE1 OE2 REMARK 470 LYS C 69 CE NZ REMARK 470 LYS C 71 CE NZ REMARK 470 LYS C 73 CE NZ REMARK 470 LYS C 76 CE NZ REMARK 470 LYS C 84 CE NZ REMARK 470 ASP C 87 CG OD1 OD2 REMARK 470 SER C 88 OG REMARK 470 ASP C 90 CG OD1 OD2 REMARK 470 GLU C 104 CD OE1 OE2 REMARK 470 ASP C 108 CG OD1 OD2 REMARK 470 HIS C 113 CG ND1 CD2 CE1 NE2 REMARK 470 ALA I1005 C O CB REMARK 470 GLU D 62 CD OE1 OE2 REMARK 470 LYS D 69 NZ REMARK 470 LYS D 71 CE NZ REMARK 470 LYS D 73 CE NZ REMARK 470 LYS D 76 CE NZ REMARK 470 LYS D 84 CD CE NZ REMARK 470 GLU D 89 OE1 OE2 REMARK 470 GLU D 104 CG CD OE1 OE2 REMARK 470 GLU E 58 CG CD OE1 OE2 REMARK 470 GLU E 59 CD OE1 OE2 REMARK 470 GLU E 62 CG CD OE1 OE2 REMARK 470 GLU E 64 CD OE1 OE2 REMARK 470 ARG E 65 NH1 NH2 REMARK 470 LYS E 69 CG CD CE NZ REMARK 470 LYS E 71 CD CE NZ REMARK 470 LYS E 74 CD CE NZ REMARK 470 LYS E 76 CG CD CE NZ REMARK 470 LYS E 84 NZ REMARK 470 GLU E 104 CG CD OE1 OE2 REMARK 470 HIS E 107 CE1 NE2 REMARK 470 ARG E 111 CG CD NE CZ NH1 NH2 REMARK 470 ARG E 112 CG CD NE CZ NH1 NH2 REMARK 470 HIS E 113 C O CB CG ND1 CD2 CE1 REMARK 470 HIS E 113 NE2 REMARK 470 ZT1 K1004 CAP CAR NAS CAT NAN CAO REMARK 470 GLU F 59 CD OE1 OE2 REMARK 470 LYS F 71 CD CE NZ REMARK 470 ASN F 72 CG OD1 ND2 REMARK 470 LYS F 73 CG CD CE NZ REMARK 470 LYS F 74 CG CD CE NZ REMARK 470 LYS F 76 CG CD CE NZ REMARK 470 LYS F 84 NZ REMARK 470 GLU F 104 CG CD OE1 OE2 REMARK 470 ASP F 108 OD1 OD2 REMARK 470 ALA L1005 C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 88 -18.34 -49.71 REMARK 500 ARG C 112 -84.08 -125.87 REMARK 500 ARG E 112 41.12 -101.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 89 O REMARK 620 2 VAL C 63 O 111.3 REMARK 620 3 TYR C 105 OH 110.9 1.6 REMARK 620 4 HOH C 201 O 86.8 27.1 26.1 REMARK 620 5 HOH C 205 O 79.9 156.7 158.2 163.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 89 O REMARK 620 2 HOH B 210 O 118.2 REMARK 620 3 VAL D 63 O 116.6 1.8 REMARK 620 4 TYR D 105 OH 116.1 3.0 1.4 REMARK 620 5 HOH D 315 O 114.1 4.1 2.6 2.8 REMARK 620 6 HOH D 316 O 116.7 2.4 2.7 4.1 3.3 REMARK 620 N 1 2 3 4 5 DBREF 7N27 A 58 113 UNP Q9Y232 CDYL_HUMAN 4 59 DBREF 7N27 G 1000 1005 PDB 7N27 7N27 1000 1005 DBREF 7N27 B 58 113 UNP Q9Y232 CDYL_HUMAN 4 59 DBREF 7N27 H 1000 1005 PDB 7N27 7N27 1000 1005 DBREF 7N27 C 58 113 UNP Q9Y232 CDYL_HUMAN 4 59 DBREF 7N27 I 1000 1005 PDB 7N27 7N27 1000 1005 DBREF 7N27 D 58 113 UNP Q9Y232 CDYL_HUMAN 4 59 DBREF 7N27 J 1000 1005 PDB 7N27 7N27 1000 1005 DBREF 7N27 E 58 113 UNP Q9Y232 CDYL_HUMAN 4 59 DBREF 7N27 K 1000 1005 PDB 7N27 7N27 1000 1005 DBREF 7N27 F 58 113 UNP Q9Y232 CDYL_HUMAN 4 59 DBREF 7N27 L 1000 1005 PDB 7N27 7N27 1000 1005 SEQADV 7N27 GLY A 57 UNP Q9Y232 EXPRESSION TAG SEQADV 7N27 GLY B 57 UNP Q9Y232 EXPRESSION TAG SEQADV 7N27 GLY C 57 UNP Q9Y232 EXPRESSION TAG SEQADV 7N27 GLY D 57 UNP Q9Y232 EXPRESSION TAG SEQADV 7N27 GLY E 57 UNP Q9Y232 EXPRESSION TAG SEQADV 7N27 GLY F 57 UNP Q9Y232 EXPRESSION TAG SEQRES 1 A 57 GLY GLU GLU LEU TYR GLU VAL GLU ARG ILE VAL ASP LYS SEQRES 2 A 57 ARG LYS ASN LYS LYS GLY LYS THR GLU TYR LEU VAL ARG SEQRES 3 A 57 TRP LYS GLY TYR ASP SER GLU ASP ASP THR TRP GLU PRO SEQRES 4 A 57 GLU GLN HIS LEU VAL ASN CYS GLU GLU TYR ILE HIS ASP SEQRES 5 A 57 PHE ASN ARG ARG HIS SEQRES 1 G 6 MN1 PF5 ALA PHE ZT1 ALA SEQRES 1 B 57 GLY GLU GLU LEU TYR GLU VAL GLU ARG ILE VAL ASP LYS SEQRES 2 B 57 ARG LYS ASN LYS LYS GLY LYS THR GLU TYR LEU VAL ARG SEQRES 3 B 57 TRP LYS GLY TYR ASP SER GLU ASP ASP THR TRP GLU PRO SEQRES 4 B 57 GLU GLN HIS LEU VAL ASN CYS GLU GLU TYR ILE HIS ASP SEQRES 5 B 57 PHE ASN ARG ARG HIS SEQRES 1 H 6 MN1 PF5 ALA PHE ZT1 ALA SEQRES 1 C 57 GLY GLU GLU LEU TYR GLU VAL GLU ARG ILE VAL ASP LYS SEQRES 2 C 57 ARG LYS ASN LYS LYS GLY LYS THR GLU TYR LEU VAL ARG SEQRES 3 C 57 TRP LYS GLY TYR ASP SER GLU ASP ASP THR TRP GLU PRO SEQRES 4 C 57 GLU GLN HIS LEU VAL ASN CYS GLU GLU TYR ILE HIS ASP SEQRES 5 C 57 PHE ASN ARG ARG HIS SEQRES 1 I 6 MN1 PF5 ALA PHE ZT1 ALA SEQRES 1 D 57 GLY GLU GLU LEU TYR GLU VAL GLU ARG ILE VAL ASP LYS SEQRES 2 D 57 ARG LYS ASN LYS LYS GLY LYS THR GLU TYR LEU VAL ARG SEQRES 3 D 57 TRP LYS GLY TYR ASP SER GLU ASP ASP THR TRP GLU PRO SEQRES 4 D 57 GLU GLN HIS LEU VAL ASN CYS GLU GLU TYR ILE HIS ASP SEQRES 5 D 57 PHE ASN ARG ARG HIS SEQRES 1 J 6 MN1 PF5 ALA PHE ZT1 ALA SEQRES 1 E 57 GLY GLU GLU LEU TYR GLU VAL GLU ARG ILE VAL ASP LYS SEQRES 2 E 57 ARG LYS ASN LYS LYS GLY LYS THR GLU TYR LEU VAL ARG SEQRES 3 E 57 TRP LYS GLY TYR ASP SER GLU ASP ASP THR TRP GLU PRO SEQRES 4 E 57 GLU GLN HIS LEU VAL ASN CYS GLU GLU TYR ILE HIS ASP SEQRES 5 E 57 PHE ASN ARG ARG HIS SEQRES 1 K 6 MN1 PF5 ALA PHE ZT1 ALA SEQRES 1 F 57 GLY GLU GLU LEU TYR GLU VAL GLU ARG ILE VAL ASP LYS SEQRES 2 F 57 ARG LYS ASN LYS LYS GLY LYS THR GLU TYR LEU VAL ARG SEQRES 3 F 57 TRP LYS GLY TYR ASP SER GLU ASP ASP THR TRP GLU PRO SEQRES 4 F 57 GLU GLN HIS LEU VAL ASN CYS GLU GLU TYR ILE HIS ASP SEQRES 5 F 57 PHE ASN ARG ARG HIS SEQRES 1 L 6 MN1 PF5 ALA PHE ZT1 ALA HET MN1 G1000 8 HET PF5 G1001 16 HET ZT1 G1004 19 HET MN1 H1000 8 HET PF5 H1001 16 HET ZT1 H1004 19 HET MN1 I1000 8 HET PF5 I1001 16 HET ZT1 I1004 19 HET MN1 J1000 8 HET PF5 J1001 16 HET ZT1 J1004 19 HET MN1 K1000 8 HET PF5 K1001 16 HET ZT1 K1004 13 HET MN1 L1000 8 HET PF5 L1001 16 HET ZT1 L1004 19 HET NA A 201 1 HET NA D 201 1 HET UNX D 202 1 HET UNX F 201 1 HETNAM MN1 4-CARBOXYPIPERIDINE HETNAM PF5 2,3,4,5,6-PENTAFLUORO-L-PHENYLALANINE HETNAM ZT1 N~6~-[(1-METHYL-1H-IMIDAZOL-5-YL)METHYL]-N~6~-PROPAN-2- HETNAM 2 ZT1 YL-L-LYSINE HETNAM NA SODIUM ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN PF5 FLUORINATED PHENYLALANINE FORMUL 2 MN1 6(C6 H11 N O2) FORMUL 2 PF5 6(C9 H6 F5 N O2) FORMUL 2 ZT1 6(C14 H26 N4 O2) FORMUL 13 NA 2(NA 1+) FORMUL 15 UNX 2(X) FORMUL 17 HOH *69(H2 O) HELIX 1 AA1 ASP A 87 ASP A 91 5 5 HELIX 2 AA2 GLN A 97 LEU A 99 5 3 HELIX 3 AA3 CYS A 102 HIS A 113 1 12 HELIX 4 AA4 ASP B 87 ASP B 91 5 5 HELIX 5 AA5 GLN B 97 LEU B 99 5 3 HELIX 6 AA6 CYS B 102 HIS B 113 1 12 HELIX 7 AA7 ASP C 87 ASP C 91 5 5 HELIX 8 AA8 GLN C 97 LEU C 99 5 3 HELIX 9 AA9 CYS C 102 ARG C 112 1 11 HELIX 10 AB1 ASP D 87 ASP D 91 5 5 HELIX 11 AB2 GLN D 97 LEU D 99 5 3 HELIX 12 AB3 CYS D 102 HIS D 113 1 12 HELIX 13 AB4 ASP E 87 ASP E 91 5 5 HELIX 14 AB5 GLN E 97 LEU E 99 5 3 HELIX 15 AB6 CYS E 102 ARG E 111 1 10 HELIX 16 AB7 ASP F 87 ASP F 91 5 5 HELIX 17 AB8 GLN F 97 LEU F 99 5 3 HELIX 18 AB9 CYS F 102 ARG F 112 1 11 SHEET 1 AA1 2 LEU A 60 TYR A 61 0 SHEET 2 AA1 2 ALA G1002 PHE G1003 -1 O ALA G1002 N TYR A 61 SHEET 1 AA2 3 VAL A 63 LYS A 71 0 SHEET 2 AA2 3 THR A 77 TRP A 83 -1 O GLU A 78 N ARG A 70 SHEET 3 AA2 3 THR A 92 PRO A 95 -1 O GLU A 94 N TYR A 79 SHEET 1 AA3 3 ALA H1002 ALA H1005 0 SHEET 2 AA3 3 LEU B 60 TYR B 61 -1 N TYR B 61 O ALA H1002 SHEET 3 AA3 3 GLU C 58 GLU C 58 -1 O GLU C 58 N LEU B 60 SHEET 1 AA4 3 VAL B 63 LYS B 71 0 SHEET 2 AA4 3 THR B 77 TRP B 83 -1 O GLU B 78 N ARG B 70 SHEET 3 AA4 3 THR B 92 PRO B 95 -1 O GLU B 94 N TYR B 79 SHEET 1 AA5 2 LEU C 60 TYR C 61 0 SHEET 2 AA5 2 ALA I1002 PHE I1003 -1 O ALA I1002 N TYR C 61 SHEET 1 AA6 3 VAL C 63 LYS C 71 0 SHEET 2 AA6 3 THR C 77 TRP C 83 -1 O ARG C 82 N GLU C 64 SHEET 3 AA6 3 THR C 92 PRO C 95 -1 O GLU C 94 N TYR C 79 SHEET 1 AA7 2 LEU D 60 TYR D 61 0 SHEET 2 AA7 2 ALA J1002 PHE J1003 -1 O ALA J1002 N TYR D 61 SHEET 1 AA8 3 VAL D 63 LYS D 71 0 SHEET 2 AA8 3 THR D 77 TRP D 83 -1 O LEU D 80 N VAL D 67 SHEET 3 AA8 3 THR D 92 PRO D 95 -1 O GLU D 94 N TYR D 79 SHEET 1 AA9 2 LEU E 60 TYR E 61 0 SHEET 2 AA9 2 ALA K1002 PHE K1003 -1 O ALA K1002 N TYR E 61 SHEET 1 AB1 3 VAL E 63 LYS E 71 0 SHEET 2 AB1 3 THR E 77 TRP E 83 -1 O ARG E 82 N ARG E 65 SHEET 3 AB1 3 THR E 92 PRO E 95 -1 O GLU E 94 N TYR E 79 SHEET 1 AB2 3 VAL F 63 LYS F 71 0 SHEET 2 AB2 3 THR F 77 TRP F 83 -1 O LEU F 80 N VAL F 67 SHEET 3 AB2 3 THR F 92 PRO F 95 -1 O THR F 92 N VAL F 81 LINK C MN1 G1000 N PF5 G1001 1555 1555 1.34 LINK C PF5 G1001 N ALA G1002 1555 1555 1.32 LINK C PHE G1003 N ZT1 G1004 1555 1555 1.33 LINK C ZT1 G1004 N ALA G1005 1555 1555 1.34 LINK C MN1 H1000 N PF5 H1001 1555 1555 1.33 LINK C PF5 H1001 N ALA H1002 1555 1555 1.33 LINK C PHE H1003 N ZT1 H1004 1555 1555 1.33 LINK C ZT1 H1004 N ALA H1005 1555 1555 1.34 LINK C MN1 I1000 N PF5 I1001 1555 1555 1.38 LINK C PF5 I1001 N ALA I1002 1555 1555 1.34 LINK C PHE I1003 N ZT1 I1004 1555 1555 1.34 LINK C ZT1 I1004 N ALA I1005 1555 1555 1.34 LINK C MN1 J1000 N PF5 J1001 1555 1555 1.35 LINK C PF5 J1001 N ALA J1002 1555 1555 1.35 LINK C PHE J1003 N ZT1 J1004 1555 1555 1.34 LINK C ZT1 J1004 N ALA J1005 1555 1555 1.34 LINK C MN1 K1000 N PF5 K1001 1555 1555 1.33 LINK C PF5 K1001 N ALA K1002 1555 1555 1.34 LINK C PHE K1003 N ZT1 K1004 1555 1555 1.34 LINK C ZT1 K1004 N ALA K1005 1555 1555 1.34 LINK C MN1 L1000 N PF5 L1001 1555 1555 1.34 LINK C PF5 L1001 N ALA L1002 1555 1555 1.34 LINK C PHE L1003 N ZT1 L1004 1555 1555 1.34 LINK C ZT1 L1004 N ALA L1005 1555 1555 1.34 LINK O GLU A 89 NA NA A 201 1555 1555 2.59 LINK NA NA A 201 O VAL C 63 2565 1555 2.70 LINK NA NA A 201 OH TYR C 105 2565 1555 2.70 LINK NA NA A 201 O HOH C 201 1555 2564 2.44 LINK NA NA A 201 O HOH C 205 1555 2564 2.31 LINK O GLU B 89 NA NA D 201 1555 2575 2.28 LINK O HOH B 210 NA NA D 201 2574 1555 2.37 LINK O VAL D 63 NA NA D 201 1555 1555 2.41 LINK OH TYR D 105 NA NA D 201 1555 1555 2.46 LINK NA NA D 201 O HOH D 315 1555 1555 2.36 LINK NA NA D 201 O HOH D 316 1555 1555 2.45 CRYST1 62.971 76.386 80.628 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013091 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012403 0.00000