HEADER PROTEIN FIBRIL 29-MAY-21 7N2E TITLE MICROED STRUCTURE OF HUMAN CPEB3 SEGMENT (154-161) STRAIGHT POLYMORPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: CPEB3; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: RESIDUES 154-161; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS FUNCTIONAL AMYLOID, MICROED, AMYLOID, PROTEIN FIBRIL EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR M.D.FLORES,L.S.RICHARDS,C.T.ZEE,C.GLYNN,M.GALLAGHER-JONES,M.R.SAWAYA REVDAT 3 22-MAY-24 7N2E 1 REMARK REVDAT 2 10-MAY-23 7N2E 1 JRNL REVDAT 1 01-JUN-22 7N2E 0 JRNL AUTH L.S.RICHARDS,M.D.FLORES,C.MILLAN,C.GLYNN,C.T.ZEE,M.R.SAWAYA, JRNL AUTH 2 M.GALLAGHER-JONES,R.J.BORGES,I.USON,J.A.RODRIGUEZ JRNL TITL FRAGMENT-BASED AB INITIO PHASING OF PEPTIDIC NANOCRYSTALS BY JRNL TITL 2 MICROED. JRNL REF ACS BIO MED CHEM AU V. 3 201 2023 JRNL REFN ESSN 2694-2437 JRNL PMID 37096030 JRNL DOI 10.1021/ACSBIOMEDCHEMAU.2C00082 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 REMARK 3 COMPLETENESS FOR RANGE (%) : 79.2 REMARK 3 NUMBER OF REFLECTIONS : 1959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.0970 - 1.9873 0.78 233 27 0.1832 0.2503 REMARK 3 2 1.9873 - 1.5831 0.77 198 22 0.1556 0.1877 REMARK 3 3 1.5831 - 1.3847 0.82 246 27 0.1819 0.2269 REMARK 3 4 1.3847 - 1.2588 0.77 199 23 0.1948 0.1407 REMARK 3 5 1.2588 - 1.1690 0.80 228 25 0.2021 0.2209 REMARK 3 6 1.1690 - 1.1004 0.80 234 26 0.1742 0.1409 REMARK 3 7 1.1004 - 1.0455 0.81 218 24 0.2136 0.2150 REMARK 3 8 1.0455 - 1.0001 0.79 206 23 0.2207 0.2503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 3.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N2E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000254602. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : FILAMENT REMARK 240 SPECIMEN TYPE : NULL REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : NULL REMARK 240 TEMPERATURE (KELVIN) : NULL REMARK 240 PH : NULL REMARK 240 NUMBER OF CRYSTALS USED : NULL REMARK 240 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 240 DETECTOR TYPE : OTHER REMARK 240 ACCELERATION VOLTAGE (KV) : 200 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 1976 REMARK 240 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 240 RESOLUTION RANGE LOW (A) : 7.097 REMARK 240 DATA SCALING SOFTWARE : XSCALE REMARK 240 COMPLETENESS FOR RANGE (%) : 79.6 REMARK 240 DATA REDUNDANCY : 5.861 REMARK 240 IN THE HIGHEST RESOLUTION SHELL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :1.00 REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :1.03 REMARK 240 COMPLETENESS FOR SHELL (%) : 81.0 REMARK 240 DATA REDUNDANCY IN SHELL : 5.30 REMARK 240 R MERGE FOR SHELL (I) : 0.32300 REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : NULL REMARK 240 STARTING MODEL : NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 8.14500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 1260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 7N2E C 194 201 PDB 7N2E 7N2E 194 201 SEQRES 1 C 8 GLN ILE GLY LEU ALA GLN THR GLN CRYST1 4.830 16.290 29.020 90.00 94.61 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.207039 0.000000 0.016676 0.00000 SCALE2 0.000000 0.061387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.034571 0.00000 ANISOU 1 N GLN C 194 554 471 405 122 161 -165 N ANISOU 2 CA GLN C 194 188 416 352 76 4 -172 C ANISOU 3 C GLN C 194 89 256 267 2 11 -89 C ANISOU 4 O GLN C 194 321 483 343 -34 -114 -171 O ANISOU 5 CB GLN C 194 292 350 430 -106 109 -130 C ANISOU 6 CG GLN C 194 524 467 506 30 180 -85 C ANISOU 7 CD GLN C 194 220 420 576 -47 95 -20 C ANISOU 8 OE1 GLN C 194 437 523 612 -75 -24 165 O ANISOU 9 NE2 GLN C 194 450 334 598 -92 176 -143 N ANISOU 17 N ILE C 195 55 86 216 0 0 -21 N ANISOU 18 CA ILE C 195 56 46 173 2 -36 -8 C ANISOU 19 C ILE C 195 25 26 101 0 0 -5 C ANISOU 20 O ILE C 195 44 38 139 -3 -26 10 O ANISOU 21 CB ILE C 195 37 36 143 0 -10 -3 C ANISOU 22 CG1 ILE C 195 327 107 284 -56 54 -17 C ANISOU 23 CG2 ILE C 195 58 54 199 -4 28 -17 C ANISOU 24 CD1 ILE C 195 512 159 326 -40 159 2 C ANISOU 36 N GLY C 196 64 113 187 22 -33 -18 N ANISOU 37 CA GLY C 196 74 145 171 -51 -20 -11 C ANISOU 38 C GLY C 196 60 94 171 -6 -40 6 C ANISOU 39 O GLY C 196 68 200 206 -35 -29 -11 O ANISOU 43 N LEU C 197 41 42 132 6 22 25 N ANISOU 44 CA LEU C 197 42 50 160 1 4 31 C ANISOU 45 C LEU C 197 42 56 151 -3 -9 39 C ANISOU 46 O LEU C 197 157 168 226 82 -41 38 O ANISOU 47 CB LEU C 197 79 81 235 -8 6 48 C ANISOU 48 CG LEU C 197 803 225 369 -21 191 15 C ANISOU 49 CD1 LEU C 197 1122 322 469 -46 348 -20 C ANISOU 50 CD2 LEU C 197 1662 449 501 128 284 30 C ANISOU 62 N ALA C 198 168 79 226 4 115 6 N ANISOU 63 CA ALA C 198 49 74 177 -6 -12 36 C ANISOU 64 C ALA C 198 86 117 273 4 -30 61 C ANISOU 65 O ALA C 198 78 201 265 -11 -9 65 O ANISOU 66 CB ALA C 198 228 156 244 75 2 81 C ANISOU 68 N GLN C 199 63 63 247 0 -8 11 N ANISOU 69 CA GLN C 199 85 96 290 -14 28 -23 C ANISOU 70 C GLN C 199 62 65 246 0 -4 -20 C ANISOU 71 O GLN C 199 133 101 287 25 -96 -53 O ANISOU 72 CB GLN C 199 156 108 375 -22 68 -27 C ANISOU 73 CG GLN C 199 146 138 532 4 -48 1 C ANISOU 74 CD GLN C 199 155 167 530 -18 -71 98 C ANISOU 75 OE1 GLN C 199 136 191 534 2 7 61 O ANISOU 76 NE2 GLN C 199 195 300 667 -43 -58 134 N ANISOU 85 N THR C 200 98 208 333 -39 -17 26 N ANISOU 86 CA ATHR C 200 106 344 345 7 -63 6 C ANISOU 87 CA BTHR C 200 106 344 345 7 -63 6 C ANISOU 88 C THR C 200 95 350 354 -35 -15 0 C ANISOU 89 O THR C 200 176 338 401 -23 107 85 O ANISOU 90 CB ATHR C 200 1559 427 508 50 81 -42 C ANISOU 91 CB BTHR C 200 1559 427 508 50 81 -42 C ANISOU 92 OG1ATHR C 200 2224 648 610 125 244 -3 O ANISOU 93 OG1BTHR C 200 2224 648 610 125 244 -3 O ANISOU 94 CG2ATHR C 200 2145 544 568 -19 167 -8 C ANISOU 95 CG2BTHR C 200 2145 544 568 -19 167 -8 C ANISOU 108 N GLN C 201 146 478 453 -17 92 5 N ANISOU 109 CA GLN C 201 256 730 494 -73 12 21 C ANISOU 110 C GLN C 201 551 841 471 -34 162 130 C ANISOU 111 O GLN C 201 522 847 428 -157 92 211 O ANISOU 112 CB GLN C 201 785 958 539 196 139 24 C ANISOU 113 CG GLN C 201 532 1219 581 133 118 23 C ANISOU 114 CD GLN C 201 799 1414 604 143 129 38 C ANISOU 115 OE1 GLN C 201 1379 1570 635 253 318 57 O ANISOU 116 NE2 GLN C 201 1141 1431 589 149 161 73 N ANISOU 117 OXT GLN C 201 696 946 466 94 182 144 O TER 126 GLN C 201 MASTER 163 0 0 0 0 0 0 6 60 1 0 1 END