HEADER TRANSFERASE/DNA/RNA 29-MAY-21 7N2M TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE ALPHA CATALYTIC CORE IN COMPLEX TITLE 2 WITH DCTP AND TEMPLATE/PRIMER HAVING T-C MISMATCH AT THE POST- TITLE 3 INSERTION SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE ALPHA CATALYTIC SUBUNIT P180; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*GP*CP*CP*UP*GP*GP*AP*GP*CP*GP*C)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*AP*T*AP*GP*TP*CP*GP*CP*TP*CP*CP*AP*GP*GP*C)-3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLA1, POLA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS DNA REPLICATION, DNA POLYMERASE, T-C MISMATCH, RNA PRIMER, DNA KEYWDS 2 TEMPLATE, HUMAN PROTEIN, DNA POLYMERASE ALPHA, TRANSFERASE-DNA-RNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.H.TAHIROV,A.G.BARANOVSKIY,N.D.BABAYEVA REVDAT 3 18-OCT-23 7N2M 1 REMARK REVDAT 2 29-JUN-22 7N2M 1 JRNL REVDAT 1 20-APR-22 7N2M 0 JRNL AUTH A.G.BARANOVSKIY,N.D.BABAYEVA,A.E.LISOVA,L.M.MORSTADT, JRNL AUTH 2 T.H.TAHIROV JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHT INTO MISMATCH EXTENSION BY JRNL TITL 2 HUMAN DNA POLYMERASE ALPHA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 44119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35467978 JRNL DOI 10.1073/PNAS.2111744119 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3575534.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 45573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2288 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6973 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 358 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6947 REMARK 3 NUCLEIC ACID ATOMS : 494 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : 1.99000 REMARK 3 B12 (A**2) : 12.48000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.58 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.990 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 29.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : DCP.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : DCP.TOP REMARK 3 TOPOLOGY FILE 5 : ION.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N2M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45582 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: 4QCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 MM ZINC SULFATE, 8.8% V/V PEG MME REMARK 280 550, AND 50 MM MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.71067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.35533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.35533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 120.71067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A1304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 336 REMARK 465 GLU A 337 REMARK 465 GLY A 674 REMARK 465 GLY A 675 REMARK 465 ARG A 676 REMARK 465 SER A 677 REMARK 465 PHE A 809 REMARK 465 ARG A 810 REMARK 465 LYS A 811 REMARK 465 PRO A 812 REMARK 465 GLN A 813 REMARK 465 GLN A 814 REMARK 465 LYS A 815 REMARK 465 LEU A 816 REMARK 465 GLY A 817 REMARK 465 ASP A 818 REMARK 465 GLU A 819 REMARK 465 ASP A 820 REMARK 465 GLU A 821 REMARK 465 GLU A 822 REMARK 465 ILE A 823 REMARK 465 ASP A 824 REMARK 465 GLY A 825 REMARK 465 ASP A 826 REMARK 465 THR A 827 REMARK 465 ASN A 828 REMARK 465 LYS A 829 REMARK 465 TYR A 830 REMARK 465 LYS A 831 REMARK 465 LYS A 832 REMARK 465 GLY A 833 REMARK 465 ALA A 883 REMARK 465 SER A 884 REMARK 465 GLU A 885 REMARK 465 ALA A 886 REMARK 465 GLN A 887 REMARK 465 LYS A 888 REMARK 465 VAL A 889 REMARK 465 THR A 890 REMARK 465 GLU A 891 REMARK 465 ASP A 892 REMARK 465 GLY A 893 REMARK 465 GLU A 894 REMARK 465 GLN A 895 REMARK 465 GLN A 1245 REMARK 465 PHE A 1246 REMARK 465 ARG A 1247 REMARK 465 VAL A 1248 REMARK 465 HIS A 1249 REMARK 465 HIS A 1250 REMARK 465 TYR A 1251 REMARK 465 HIS A 1252 REMARK 465 LYS A 1253 REMARK 465 ASP A 1254 REMARK 465 GLU A 1255 REMARK 465 GLU A 1256 REMARK 465 ASN A 1257 REMARK 465 DA C 107 REMARK 465 DT C 108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 C B 11 O3' O2' REMARK 470 DA C 109 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A1183 N - CA - C ANGL. DEV. = -15.1 DEGREES REMARK 500 G B 8 N9 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 G B 8 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC C 112 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC C 117 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 339 131.30 169.51 REMARK 500 LEU A 346 -37.05 -136.13 REMARK 500 GLU A 371 51.26 37.22 REMARK 500 PRO A 407 -179.96 -69.19 REMARK 500 LYS A 426 46.33 78.81 REMARK 500 LYS A 433 147.76 -172.84 REMARK 500 ALA A 440 41.31 -164.95 REMARK 500 GLU A 442 5.73 -65.19 REMARK 500 ASP A 445 15.51 85.20 REMARK 500 ASP A 531 41.48 -104.77 REMARK 500 ALA A 550 -73.60 -39.21 REMARK 500 LYS A 551 -85.13 -81.95 REMARK 500 LYS A 590 -67.61 172.97 REMARK 500 ALA A 597 -11.61 91.18 REMARK 500 ASN A 606 72.23 53.05 REMARK 500 LYS A 608 59.04 -66.18 REMARK 500 PHE A 642 -80.50 -140.72 REMARK 500 HIS A 658 64.40 63.18 REMARK 500 SER A 668 -51.43 -128.06 REMARK 500 PHE A 679 -70.59 -71.25 REMARK 500 CYS A 686 117.75 -34.77 REMARK 500 ASN A 774 -153.85 -97.84 REMARK 500 ALA A 837 151.33 -47.61 REMARK 500 LEU A 864 -70.93 -44.53 REMARK 500 PRO A 899 171.92 -56.95 REMARK 500 PRO A 904 0.20 -58.44 REMARK 500 LEU A 906 157.73 -41.53 REMARK 500 GLN A 931 157.91 -39.32 REMARK 500 ASP A 933 106.79 40.64 REMARK 500 ALA A 969 72.41 -159.57 REMARK 500 THR A1003 -59.29 62.55 REMARK 500 THR A1063 -96.95 -123.49 REMARK 500 ASP A1083 46.77 -92.03 REMARK 500 SER A1101 -178.87 -57.60 REMARK 500 GLN A1103 149.71 -35.74 REMARK 500 LYS A1149 -105.62 -9.44 REMARK 500 LYS A1150 -42.73 -7.77 REMARK 500 ASN A1162 -74.60 -55.75 REMARK 500 SER A1163 6.26 -63.45 REMARK 500 ARG A1167 149.98 -39.34 REMARK 500 ASN A1185 28.67 29.44 REMARK 500 PRO A1243 -19.84 -39.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G B 8 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 342 NE2 REMARK 620 2 HIS A 342 NE2 0.0 REMARK 620 3 GLU A 500 OE1 113.4 113.4 REMARK 620 4 GLU A 500 OE1 113.4 113.4 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 860 OD2 REMARK 620 2 PHE A 861 O 96.6 REMARK 620 3 ASP A1004 OD1 104.5 107.3 REMARK 620 4 DCP A1301 O1A 95.8 167.2 72.3 REMARK 620 5 DCP A1301 O1B 154.7 100.0 88.6 67.3 REMARK 620 6 DCP A1301 O3G 78.2 107.5 144.5 72.2 78.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 860 OD1 REMARK 620 2 ASP A1004 OD2 75.4 REMARK 620 3 DCP A1301 O1A 96.5 85.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1305 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1224 O REMARK 620 2 GLU A1225 O 64.7 REMARK 620 3 ILE A1227 O 73.2 115.7 REMARK 620 4 ILE A1230 O 105.2 160.1 74.6 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4QCL RELATED DB: PDB REMARK 900 SIMILAR COMPLEX WITHOUT MISMATCH DBREF 7N2M A 336 1257 UNP P09884 DPOLA_HUMAN 336 1257 DBREF 7N2M B 1 11 PDB 7N2M 7N2M 1 11 DBREF 7N2M C 107 121 PDB 7N2M 7N2M 107 121 SEQADV 7N2M ALA A 516 UNP P09884 VAL 516 CONFLICT SEQRES 1 A 922 ASP GLU GLU GLN VAL PHE HIS PHE TYR TRP LEU ASP ALA SEQRES 2 A 922 TYR GLU ASP GLN TYR ASN GLN PRO GLY VAL VAL PHE LEU SEQRES 3 A 922 PHE GLY LYS VAL TRP ILE GLU SER ALA GLU THR HIS VAL SEQRES 4 A 922 SER CYS CYS VAL MET VAL LYS ASN ILE GLU ARG THR LEU SEQRES 5 A 922 TYR PHE LEU PRO ARG GLU MET LYS ILE ASP LEU ASN THR SEQRES 6 A 922 GLY LYS GLU THR GLY THR PRO ILE SER MET LYS ASP VAL SEQRES 7 A 922 TYR GLU GLU PHE ASP GLU LYS ILE ALA THR LYS TYR LYS SEQRES 8 A 922 ILE MET LYS PHE LYS SER LYS PRO VAL GLU LYS ASN TYR SEQRES 9 A 922 ALA PHE GLU ILE PRO ASP VAL PRO GLU LYS SER GLU TYR SEQRES 10 A 922 LEU GLU VAL LYS TYR SER ALA GLU MET PRO GLN LEU PRO SEQRES 11 A 922 GLN ASP LEU LYS GLY GLU THR PHE SER HIS VAL PHE GLY SEQRES 12 A 922 THR ASN THR SER SER LEU GLU LEU PHE LEU MET ASN ARG SEQRES 13 A 922 LYS ILE LYS GLY PRO CYS TRP LEU GLU VAL LYS SER PRO SEQRES 14 A 922 GLN LEU LEU ASN GLN PRO VAL SER TRP CYS LYS ALA GLU SEQRES 15 A 922 ALA MET ALA LEU LYS PRO ASP LEU VAL ASN VAL ILE LYS SEQRES 16 A 922 ASP VAL SER PRO PRO PRO LEU VAL VAL MET ALA PHE SER SEQRES 17 A 922 MET LYS THR MET GLN ASN ALA LYS ASN HIS GLN ASN GLU SEQRES 18 A 922 ILE ILE ALA MET ALA ALA LEU VAL HIS HIS SER PHE ALA SEQRES 19 A 922 LEU ASP LYS ALA ALA PRO LYS PRO PRO PHE GLN SER HIS SEQRES 20 A 922 PHE CYS VAL VAL SER LYS PRO LYS ASP CYS ILE PHE PRO SEQRES 21 A 922 TYR ALA PHE LYS GLU VAL ILE GLU LYS LYS ASN VAL LYS SEQRES 22 A 922 VAL GLU VAL ALA ALA THR GLU ARG THR LEU LEU GLY PHE SEQRES 23 A 922 PHE LEU ALA LYS VAL HIS LYS ILE ASP PRO ASP ILE ILE SEQRES 24 A 922 VAL GLY HIS ASN ILE TYR GLY PHE GLU LEU GLU VAL LEU SEQRES 25 A 922 LEU GLN ARG ILE ASN VAL CYS LYS ALA PRO HIS TRP SER SEQRES 26 A 922 LYS ILE GLY ARG LEU LYS ARG SER ASN MET PRO LYS LEU SEQRES 27 A 922 GLY GLY ARG SER GLY PHE GLY GLU ARG ASN ALA THR CYS SEQRES 28 A 922 GLY ARG MET ILE CYS ASP VAL GLU ILE SER ALA LYS GLU SEQRES 29 A 922 LEU ILE ARG CYS LYS SER TYR HIS LEU SER GLU LEU VAL SEQRES 30 A 922 GLN GLN ILE LEU LYS THR GLU ARG VAL VAL ILE PRO MET SEQRES 31 A 922 GLU ASN ILE GLN ASN MET TYR SER GLU SER SER GLN LEU SEQRES 32 A 922 LEU TYR LEU LEU GLU HIS THR TRP LYS ASP ALA LYS PHE SEQRES 33 A 922 ILE LEU GLN ILE MET CYS GLU LEU ASN VAL LEU PRO LEU SEQRES 34 A 922 ALA LEU GLN ILE THR ASN ILE ALA GLY ASN ILE MET SER SEQRES 35 A 922 ARG THR LEU MET GLY GLY ARG SER GLU ARG ASN GLU PHE SEQRES 36 A 922 LEU LEU LEU HIS ALA PHE TYR GLU ASN ASN TYR ILE VAL SEQRES 37 A 922 PRO ASP LYS GLN ILE PHE ARG LYS PRO GLN GLN LYS LEU SEQRES 38 A 922 GLY ASP GLU ASP GLU GLU ILE ASP GLY ASP THR ASN LYS SEQRES 39 A 922 TYR LYS LYS GLY ARG LYS LYS ALA ALA TYR ALA GLY GLY SEQRES 40 A 922 LEU VAL LEU ASP PRO LYS VAL GLY PHE TYR ASP LYS PHE SEQRES 41 A 922 ILE LEU LEU LEU ASP PHE ASN SER LEU TYR PRO SER ILE SEQRES 42 A 922 ILE GLN GLU PHE ASN ILE CYS PHE THR THR VAL GLN ARG SEQRES 43 A 922 VAL ALA SER GLU ALA GLN LYS VAL THR GLU ASP GLY GLU SEQRES 44 A 922 GLN GLU GLN ILE PRO GLU LEU PRO ASP PRO SER LEU GLU SEQRES 45 A 922 MET GLY ILE LEU PRO ARG GLU ILE ARG LYS LEU VAL GLU SEQRES 46 A 922 ARG ARG LYS GLN VAL LYS GLN LEU MET LYS GLN GLN ASP SEQRES 47 A 922 LEU ASN PRO ASP LEU ILE LEU GLN TYR ASP ILE ARG GLN SEQRES 48 A 922 LYS ALA LEU LYS LEU THR ALA ASN SER MET TYR GLY CYS SEQRES 49 A 922 LEU GLY PHE SER TYR SER ARG PHE TYR ALA LYS PRO LEU SEQRES 50 A 922 ALA ALA LEU VAL THR TYR LYS GLY ARG GLU ILE LEU MET SEQRES 51 A 922 HIS THR LYS GLU MET VAL GLN LYS MET ASN LEU GLU VAL SEQRES 52 A 922 ILE TYR GLY ASP THR ASP SER ILE MET ILE ASN THR ASN SEQRES 53 A 922 SER THR ASN LEU GLU GLU VAL PHE LYS LEU GLY ASN LYS SEQRES 54 A 922 VAL LYS SER GLU VAL ASN LYS LEU TYR LYS LEU LEU GLU SEQRES 55 A 922 ILE ASP ILE ASP GLY VAL PHE LYS SER LEU LEU LEU LEU SEQRES 56 A 922 LYS LYS LYS LYS TYR ALA ALA LEU VAL VAL GLU PRO THR SEQRES 57 A 922 SER ASP GLY ASN TYR VAL THR LYS GLN GLU LEU LYS GLY SEQRES 58 A 922 LEU ASP ILE VAL ARG ARG ASP TRP CYS ASP LEU ALA LYS SEQRES 59 A 922 ASP THR GLY ASN PHE VAL ILE GLY GLN ILE LEU SER ASP SEQRES 60 A 922 GLN SER ARG ASP THR ILE VAL GLU ASN ILE GLN LYS ARG SEQRES 61 A 922 LEU ILE GLU ILE GLY GLU ASN VAL LEU ASN GLY SER VAL SEQRES 62 A 922 PRO VAL SER GLN PHE GLU ILE ASN LYS ALA LEU THR LYS SEQRES 63 A 922 ASP PRO GLN ASP TYR PRO ASP LYS LYS SER LEU PRO HIS SEQRES 64 A 922 VAL HIS VAL ALA LEU TRP ILE ASN SER GLN GLY GLY ARG SEQRES 65 A 922 LYS VAL LYS ALA GLY ASP THR VAL SER TYR VAL ILE CYS SEQRES 66 A 922 GLN ASP GLY SER ASN LEU THR ALA SER GLN ARG ALA TYR SEQRES 67 A 922 ALA PRO GLU GLN LEU GLN LYS GLN ASP ASN LEU THR ILE SEQRES 68 A 922 ASP THR GLN TYR TYR LEU ALA GLN GLN ILE HIS PRO VAL SEQRES 69 A 922 VAL ALA ARG ILE CYS GLU PRO ILE ASP GLY ILE ASP ALA SEQRES 70 A 922 VAL LEU ILE ALA THR TRP LEU GLY LEU ASP PRO THR GLN SEQRES 71 A 922 PHE ARG VAL HIS HIS TYR HIS LYS ASP GLU GLU ASN SEQRES 1 B 11 G C C U G G A G C G C SEQRES 1 C 15 DA DT DA DG DT DC DG DC DT DC DC DA DG SEQRES 2 C 15 DG DC HET DCP A1301 28 HET MG A1302 1 HET ZN A1303 1 HET ZN A1304 1 HET K A1305 1 HET 1PE A1306 16 HET SO4 A1307 5 HET ZN B 501 1 HET ZN C 601 1 HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN 1PE PEG400 FORMUL 4 DCP C9 H16 N3 O13 P3 FORMUL 5 MG MG 2+ FORMUL 6 ZN 4(ZN 2+) FORMUL 8 K K 1+ FORMUL 9 1PE C10 H22 O6 FORMUL 10 SO4 O4 S 2- FORMUL 13 HOH *110(H2 O) HELIX 1 AA1 SER A 409 LYS A 420 1 12 HELIX 2 AA2 LYS A 420 LYS A 426 1 7 HELIX 3 AA3 SER A 482 ARG A 491 1 10 HELIX 4 AA4 LYS A 522 ASP A 524 5 3 HELIX 5 AA5 ALA A 597 ASN A 606 1 10 HELIX 6 AA6 THR A 614 ASP A 630 1 17 HELIX 7 AA7 PHE A 642 CYS A 654 1 13 HELIX 8 AA8 HIS A 658 GLY A 663 5 6 HELIX 9 AA9 PHE A 679 THR A 685 1 7 HELIX 10 AB1 VAL A 693 ILE A 701 1 9 HELIX 11 AB2 HIS A 707 LYS A 717 1 11 HELIX 12 AB3 PRO A 724 GLU A 734 1 11 HELIX 13 AB4 GLU A 734 ASN A 760 1 27 HELIX 14 AB5 ASN A 760 GLY A 773 1 14 HELIX 15 AB6 ILE A 775 LEU A 780 1 6 HELIX 16 AB7 ARG A 784 ASN A 799 1 16 HELIX 17 AB8 SER A 863 PHE A 872 1 10 HELIX 18 AB9 GLY A 909 GLN A 931 1 23 HELIX 19 AC1 ASN A 935 CYS A 959 1 25 HELIX 20 AC2 LEU A 960 PHE A 962 5 3 HELIX 21 AC3 ALA A 969 MET A 994 1 26 HELIX 22 AC4 ASN A 1014 LYS A 1031 1 18 HELIX 23 AC5 LEU A 1077 ARG A 1081 5 5 HELIX 24 AC6 CYS A 1085 LEU A 1100 1 16 HELIX 25 AC7 SER A 1104 ASN A 1125 1 22 HELIX 26 AC8 PRO A 1129 GLU A 1134 5 6 HELIX 27 AC9 ASP A 1142 TYR A 1146 5 5 HELIX 28 AD1 ASP A 1148 SER A 1151 5 4 HELIX 29 AD2 LEU A 1152 GLY A 1165 1 14 HELIX 30 AD3 THR A 1187 GLN A 1190 5 4 HELIX 31 AD4 ALA A 1194 GLN A 1201 1 8 HELIX 32 AD5 ASP A 1207 GLN A 1215 1 9 HELIX 33 AD6 GLN A 1215 GLU A 1225 1 11 HELIX 34 AD7 ASP A 1231 LEU A 1239 1 9 SHEET 1 AA1 6 ALA A 516 ALA A 520 0 SHEET 2 AA1 6 THR A 372 VAL A 380 1 N MET A 379 O ALA A 520 SHEET 3 AA1 6 VAL A 359 ILE A 367 -1 N LEU A 361 O VAL A 378 SHEET 4 AA1 6 VAL A 340 GLU A 350 -1 N TYR A 349 O PHE A 360 SHEET 5 AA1 6 CYS A 497 LYS A 502 -1 O LEU A 499 N PHE A 343 SHEET 6 AA1 6 VAL A 526 ILE A 529 -1 O ASN A 527 N GLU A 500 SHEET 1 AA2 4 LYS A 431 ASN A 438 0 SHEET 2 AA2 4 LYS A 449 TYR A 457 -1 O TYR A 452 N VAL A 435 SHEET 3 AA2 4 ARG A 385 PRO A 391 -1 N LEU A 387 O VAL A 455 SHEET 4 AA2 4 PHE A 473 PHE A 477 -1 O HIS A 475 N LEU A 390 SHEET 1 AA3 2 MET A 394 ASP A 397 0 SHEET 2 AA3 2 LYS A 402 PRO A 407 -1 O THR A 406 N LYS A 395 SHEET 1 AA4 6 VAL A 609 VAL A 611 0 SHEET 2 AA4 6 SER A 581 VAL A 586 1 N CYS A 584 O GLU A 610 SHEET 3 AA4 6 ASN A 555 PHE A 568 -1 N VAL A 564 O SER A 581 SHEET 4 AA4 6 LEU A 537 GLN A 548 -1 N LEU A 537 O PHE A 568 SHEET 5 AA4 6 ILE A 633 GLY A 636 1 O VAL A 635 N MET A 540 SHEET 6 AA4 6 MET A 689 ASP A 692 1 O CYS A 691 N ILE A 634 SHEET 1 AA5 5 GLY A 850 TYR A 852 0 SHEET 2 AA5 5 ILE A1038 LYS A1051 -1 O LEU A1049 N GLY A 850 SHEET 3 AA5 5 ILE A 856 PHE A 861 -1 N LEU A 858 O GLY A1042 SHEET 4 AA5 5 SER A1005 ASN A1009 -1 O ILE A1008 N LEU A 857 SHEET 5 AA5 5 GLU A 997 TYR A1000 -1 N GLU A 997 O ASN A1009 SHEET 1 AA6 4 GLY A 850 TYR A 852 0 SHEET 2 AA6 4 ILE A1038 LYS A1051 -1 O LEU A1049 N GLY A 850 SHEET 3 AA6 4 LYS A1054 PRO A1062 -1 O VAL A1060 N VAL A1043 SHEET 4 AA6 4 TYR A1068 LYS A1075 -1 O LYS A1071 N VAL A1059 SHEET 1 AA7 3 ILE A1135 ALA A1138 0 SHEET 2 AA7 3 THR A1174 GLN A1181 -1 O VAL A1175 N LYS A1137 SHEET 3 AA7 3 ALA A1192 TYR A1193 -1 O TYR A1193 N VAL A1178 SHEET 1 AA8 3 ILE A1135 ALA A1138 0 SHEET 2 AA8 3 THR A1174 GLN A1181 -1 O VAL A1175 N LYS A1137 SHEET 3 AA8 3 THR A1205 ILE A1206 -1 O THR A1205 N GLN A1181 LINK NE2 HIS A 342 ZN ZN A1304 1555 1555 1.90 LINK NE2 HIS A 342 ZN ZN A1304 1555 6765 1.88 LINK OE1 GLU A 500 ZN ZN A1304 1555 1555 1.91 LINK OE1 GLU A 500 ZN ZN A1304 1555 6765 1.83 LINK OD2 ASP A 860 MG MG A1302 1555 1555 1.82 LINK OD1 ASP A 860 ZN ZN A1303 1555 1555 2.08 LINK O PHE A 861 MG MG A1302 1555 1555 1.87 LINK OD1 ASP A1004 MG MG A1302 1555 1555 1.84 LINK OD2 ASP A1004 ZN ZN A1303 1555 1555 2.08 LINK O CYS A1224 K K A1305 1555 1555 3.19 LINK O GLU A1225 K K A1305 1555 1555 3.05 LINK O ILE A1227 K K A1305 1555 1555 2.63 LINK O ILE A1230 K K A1305 1555 1555 2.94 LINK O1A DCP A1301 MG MG A1302 1555 1555 2.49 LINK O1B DCP A1301 MG MG A1302 1555 1555 1.88 LINK O3G DCP A1301 MG MG A1302 1555 1555 1.99 LINK O1A DCP A1301 ZN ZN A1303 1555 1555 2.40 LINK N7 G B 6 ZN ZN B 501 1555 1555 2.11 CISPEP 1 LYS A 576 PRO A 577 0 0.02 CRYST1 140.285 140.285 181.066 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007128 0.004116 0.000000 0.00000 SCALE2 0.000000 0.008231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005523 0.00000