HEADER VIRAL PROTEIN, HYDROLASE/INHIBITOR 04-JUN-21 7N55 TITLE THE CRYSTAL STRUCTURE OF THE MUTANT I38T PA ENDONUCLEASE TITLE 2 (2009/H1N1/CALIFORNIA) IN COMPLEX WITH SJ000988514 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SWL SOURCE 3 A/CALIFORNIA/04/2009 H1N1); SOURCE 4 ORGANISM_TAXID: 641501; SOURCE 5 STRAIN: SWL A/CALIFORNIA/04/2009 H1N1; SOURCE 6 GENE: PA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEASE, INFLUENZA, INHIBITOR RESISTANCE, VIRAL PROTEIN, HYDROLASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.G.CUYPERS,J.P.SLAVISH,Z.RANKOVIC,S.W.WHITE REVDAT 3 25-OCT-23 7N55 1 REMARK REVDAT 2 29-MAR-23 7N55 1 JRNL REVDAT 1 08-JUN-22 7N55 0 JRNL AUTH P.J.SLAVISH,M.G.CUYPERS,M.A.RIMMER,A.ABDOLVAHABI,T.JEEVAN, JRNL AUTH 2 G.KUMAR,J.A.JARUSIEWICZ,S.VAITHIYALINGAM,J.C.JONES, JRNL AUTH 3 J.J.BOWLING,J.E.PRICE,R.M.DUBOIS,J.MIN,R.J.WEBBY,Z.RANKOVIC, JRNL AUTH 4 S.W.WHITE JRNL TITL CHEMICAL SCAFFOLD RECYCLING: STRUCTURE-GUIDED CONVERSION OF JRNL TITL 2 AN HIV INTEGRASE INHIBITOR INTO A POTENT INFLUENZA VIRUS JRNL TITL 3 RNA-DEPENDENT RNA POLYMERASE INHIBITOR DESIGNED TO MINIMIZE JRNL TITL 4 RESISTANCE POTENTIAL. JRNL REF EUR.J.MED.CHEM. V. 247 15035 2023 JRNL REFN ISSN 0223-5234 JRNL PMID 36603507 JRNL DOI 10.1016/J.EJMECH.2022.115035 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 11895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0000 - 3.7000 0.98 2924 152 0.1902 0.2063 REMARK 3 2 3.7000 - 2.9400 0.99 2816 146 0.2500 0.3402 REMARK 3 3 2.9400 - 2.5600 1.00 2785 144 0.3093 0.3752 REMARK 3 4 2.5600 - 2.3300 0.99 2753 175 0.3114 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.381 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1553 REMARK 3 ANGLE : 0.457 2102 REMARK 3 CHIRALITY : 0.037 219 REMARK 3 PLANARITY : 0.003 264 REMARK 3 DIHEDRAL : 14.348 224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -3 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7385 -33.8926 -4.0554 REMARK 3 T TENSOR REMARK 3 T11: 0.5947 T22: 0.7695 REMARK 3 T33: 0.5682 T12: -0.0900 REMARK 3 T13: -0.0762 T23: 0.2319 REMARK 3 L TENSOR REMARK 3 L11: 3.9912 L22: 2.9866 REMARK 3 L33: 4.8070 L12: -1.2294 REMARK 3 L13: -2.6518 L23: 3.5801 REMARK 3 S TENSOR REMARK 3 S11: -0.4223 S12: -0.2968 S13: 0.1151 REMARK 3 S21: 1.0738 S22: 0.4032 S23: 0.0582 REMARK 3 S31: 0.1933 S32: 0.5998 S33: 0.0393 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6249 -36.0940 -3.3932 REMARK 3 T TENSOR REMARK 3 T11: 0.7732 T22: 1.1173 REMARK 3 T33: 0.9048 T12: 0.0087 REMARK 3 T13: -0.0969 T23: 0.3831 REMARK 3 L TENSOR REMARK 3 L11: 8.4821 L22: 4.1453 REMARK 3 L33: 1.4985 L12: 0.9033 REMARK 3 L13: 1.3261 L23: 2.3320 REMARK 3 S TENSOR REMARK 3 S11: 0.5744 S12: 0.6627 S13: 0.2472 REMARK 3 S21: 0.0289 S22: -1.0190 S23: -2.1651 REMARK 3 S31: 0.0480 S32: 0.8326 S33: 0.4911 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8606 -35.9310 -14.2464 REMARK 3 T TENSOR REMARK 3 T11: 0.4920 T22: 0.5974 REMARK 3 T33: 0.6253 T12: -0.0991 REMARK 3 T13: -0.0073 T23: 0.2843 REMARK 3 L TENSOR REMARK 3 L11: 4.8416 L22: 5.9957 REMARK 3 L33: 4.3249 L12: 3.4582 REMARK 3 L13: 3.9213 L23: 4.7959 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: -0.0412 S13: -0.0353 REMARK 3 S21: 0.4766 S22: -0.4053 S23: -0.1473 REMARK 3 S31: 0.7085 S32: -0.3780 S33: 0.1275 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1374 -48.3759 -22.1813 REMARK 3 T TENSOR REMARK 3 T11: 0.5863 T22: 0.7942 REMARK 3 T33: 0.5380 T12: -0.0103 REMARK 3 T13: 0.2127 T23: 0.1694 REMARK 3 L TENSOR REMARK 3 L11: 2.5769 L22: 7.4752 REMARK 3 L33: 3.1414 L12: -0.8332 REMARK 3 L13: -0.3904 L23: -0.7425 REMARK 3 S TENSOR REMARK 3 S11: -0.2761 S12: 0.6001 S13: -0.2328 REMARK 3 S21: -0.7931 S22: 0.0602 S23: -0.2877 REMARK 3 S31: 0.2645 S32: 0.4089 S33: 0.1491 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6830 -34.8303 -27.5734 REMARK 3 T TENSOR REMARK 3 T11: 0.9841 T22: 1.9786 REMARK 3 T33: 0.9642 T12: -0.4767 REMARK 3 T13: 0.1897 T23: 0.2717 REMARK 3 L TENSOR REMARK 3 L11: 8.0963 L22: 5.4572 REMARK 3 L33: 2.8876 L12: -3.7451 REMARK 3 L13: 0.6972 L23: 2.9253 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.9902 S13: 0.9035 REMARK 3 S21: -1.5783 S22: 0.4592 S23: -1.1863 REMARK 3 S31: -0.5948 S32: 0.7934 S33: -0.8162 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6770 -36.6436 -29.2859 REMARK 3 T TENSOR REMARK 3 T11: 0.7102 T22: 0.9746 REMARK 3 T33: 0.6207 T12: -0.1563 REMARK 3 T13: 0.1169 T23: 0.2262 REMARK 3 L TENSOR REMARK 3 L11: 3.0984 L22: 8.3671 REMARK 3 L33: 4.6136 L12: 0.5446 REMARK 3 L13: -0.3391 L23: 3.0590 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.7056 S13: 0.3295 REMARK 3 S21: -0.6913 S22: 0.1523 S23: -0.5403 REMARK 3 S31: -0.1712 S32: -0.1383 S33: -0.1982 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3703 -24.8753 -16.8177 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.7247 REMARK 3 T33: 0.7243 T12: -0.3064 REMARK 3 T13: -0.1278 T23: 0.3781 REMARK 3 L TENSOR REMARK 3 L11: 0.6993 L22: 2.7765 REMARK 3 L33: 2.8680 L12: -0.8594 REMARK 3 L13: 0.2520 L23: 1.8033 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: -0.2333 S13: 0.3022 REMARK 3 S21: -0.0309 S22: -0.2146 S23: -0.0236 REMARK 3 S31: -0.6939 S32: 0.3482 S33: 0.1185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N55 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11904 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 74.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7N47 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.8, 1 M AMMONIUM REMARK 280 SULFATE, 10 MM MNCL2, 10 MM MGCL2, 0.5% PVP K15, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 44.81750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 44.81750 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 44.81750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 44.81750 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 66.88050 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.81750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 44.81750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 44.81750 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.88050 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 44.81750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 44.81750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.88050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -589.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -89.63500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -89.63500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -89.63500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -89.63500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -89.63500 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 -89.63500 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 -89.63500 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 -89.63500 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A -3 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 ARG A 84 NE CZ NH1 NH2 REMARK 470 ILE A 85 CD1 REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LEU A 132 CG CD1 CD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 137 CD CE NZ REMARK 470 ILE A 138 CD1 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 SER A 140 OG REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 158 CE NZ REMARK 470 GLU A 165 CD OE1 OE2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 125 -135.56 -90.57 REMARK 500 THR A 162 -75.68 60.64 REMARK 500 SER A 194 -13.01 -156.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QQ4 A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 98.7 REMARK 620 3 GLU A 119 OE2 168.6 88.9 REMARK 620 4 ILE A 120 O 86.4 96.7 84.2 REMARK 620 5 09Y A 207 O13 95.9 98.7 91.3 163.9 REMARK 620 6 09Y A 207 O15 77.4 175.3 94.7 80.7 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 202 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 89.6 REMARK 620 3 09Y A 207 O13 119.9 84.1 REMARK 620 4 09Y A 207 O10 98.5 163.9 79.8 REMARK 620 5 HOH A 302 O 160.2 92.1 79.9 85.0 REMARK 620 6 HOH A 303 O 85.5 103.2 154.0 91.3 74.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7N47 RELATED DB: PDB DBREF 7N55 A 1 50 UNP C3W5S0 C3W5S0_I09A0 1 50 DBREF 7N55 A 73 196 UNP C3W5S0 C3W5S0_I09A0 73 196 SEQADV 7N55 MET A -19 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 GLY A -18 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 SER A -17 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 SER A -16 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A -15 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A -14 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A -13 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A -12 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A -11 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A -10 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 SER A -9 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 SER A -8 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 GLY A -7 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 LEU A -6 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 VAL A -5 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 PRO A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 ARG A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 HIS A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 7N55 THR A 38 UNP C3W5S0 ILE 38 ENGINEERED MUTATION SEQADV 7N55 GLY A 51 UNP C3W5S0 LINKER SEQADV 7N55 GLY A 52 UNP C3W5S0 LINKER SEQADV 7N55 SER A 53 UNP C3W5S0 LINKER SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET GLU ASP PHE VAL ARG SEQRES 3 A 197 GLN CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS SEQRES 4 A 197 ALA MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR SEQRES 5 A 197 ASN LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS SEQRES 6 A 197 PHE MET TYR SER ASP GLY GLY SER LYS HIS ARG PHE GLU SEQRES 7 A 197 ILE ILE GLU GLY ARG ASP ARG ILE MET ALA TRP THR VAL SEQRES 8 A 197 VAL ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO SEQRES 9 A 197 LYS PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG SEQRES 10 A 197 PHE ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS ILE SEQRES 11 A 197 TYR TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS SEQRES 12 A 197 THR HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET SEQRES 13 A 197 ALA THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG SEQRES 14 A 197 ALA ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU SEQRES 15 A 197 MET ALA SER ARG SER LEU TRP ASP SER PHE ARG GLN SER SEQRES 16 A 197 GLU ARG HET MN A 201 1 HET MN A 202 1 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET QQ4 A 206 41 HET 09Y A 207 28 HET SO4 A 208 5 HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETNAM QQ4 HEXA VINYLPYRROLIDONE K15 HETNAM 09Y 5-HYDROXY-N-[2-(2-METHOXYPYRIDIN-4-YL)ETHYL]-2-(2- HETNAM 2 09Y METHYLPHENYL)-6-OXO-1,6-DIHYDROPYRIMIDINE-4- HETNAM 3 09Y CARBOXAMIDE HETSYN QQ4 1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-DODECANE- HETSYN 2 QQ4 1,3,5,7,9,11-HEXAYL]HEXA(PYRROLIDIN-2-ONE) FORMUL 2 MN 2(MN 2+) FORMUL 4 SO4 4(O4 S 2-) FORMUL 7 QQ4 C36 H56 N6 O6 FORMUL 8 09Y C20 H20 N4 O4 FORMUL 10 HOH *16(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 GLY A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 ILE A 138 1 13 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLN A 193 1 7 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O PHE A 148 N GLY A 121 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 201 1555 1555 2.32 LINK OE1 GLU A 80 MN MN A 202 1555 1555 2.48 LINK OD2 ASP A 108 MN MN A 201 1555 1555 2.14 LINK OD1 ASP A 108 MN MN A 202 1555 1555 2.24 LINK OE2 GLU A 119 MN MN A 201 1555 1555 2.30 LINK O ILE A 120 MN MN A 201 1555 1555 2.06 LINK MN MN A 201 O13 09Y A 207 1555 1555 1.88 LINK MN MN A 201 O15 09Y A 207 1555 1555 2.26 LINK MN MN A 202 O13 09Y A 207 1555 1555 2.28 LINK MN MN A 202 O10 09Y A 207 1555 1555 1.81 LINK MN MN A 202 O HOH A 302 1555 1555 2.25 LINK MN MN A 202 O HOH A 303 1555 1555 2.16 CRYST1 89.635 89.635 133.761 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007476 0.00000