HEADER TRANSFERASE 11-JUN-21 7N81 TITLE CRYSTAL STRUCTURE OF PI5P4KIIBETA COMPLEX WITH CC260 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE TYPE-2 BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1-PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4-KINASE 2-BETA, COMPND 5 DIPHOSPHOINOSITIDE KINASE 2-BETA,PHOSPHATIDYLINOSITOL 5-PHOSPHATE 4- COMPND 6 KINASE TYPE II BETA,PI(5)P 4-KINASE TYPE II BETA,PIP4KII-BETA, COMPND 7 PTDINS(5)P-4-KINASE ISOFORM 2-BETA; COMPND 8 EC: 2.7.1.149; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIP4K2B, PIP5K2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.CHEN,Y.HA REVDAT 4 18-OCT-23 7N81 1 REMARK REVDAT 3 04-OCT-23 7N81 1 REMARK REVDAT 2 14-JUL-21 7N81 1 JRNL REVDAT 1 30-JUN-21 7N81 0 JRNL AUTH S.CHEN,C.CHANDRA TJIN,X.GAO,Y.XUE,H.JIAO,R.ZHANG,M.WU,Z.HE, JRNL AUTH 2 J.ELLMAN,Y.HA JRNL TITL PHARMACOLOGICAL INHIBITION OF PI5P4K ALPHA / BETA DISRUPTS JRNL TITL 2 CELL ENERGY METABOLISM AND SELECTIVELY KILLS P53-NULL TUMOR JRNL TITL 3 CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34001596 JRNL DOI 10.1073/PNAS.2002486118 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1451 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.72000 REMARK 3 B22 (A**2) : -2.26000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.46000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.897 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.372 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4848 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6577 ; 1.631 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 598 ; 6.927 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;37.106 ;23.721 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 767 ;21.114 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;20.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 744 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3679 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7N81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.96800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0189 REMARK 200 STARTING MODEL: 1BO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM BROMIDE, 0.02 M CADMIUM REMARK 280 CHLORIDE, 20% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.87400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 ASN A 27 REMARK 465 CYS A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 GLY A 31 REMARK 465 LYS A 32 REMARK 465 GLY A 219 REMARK 465 SER A 220 REMARK 465 THR A 221 REMARK 465 VAL A 222 REMARK 465 ALA A 223 REMARK 465 ARG A 224 REMARK 465 GLU A 225 REMARK 465 ALA A 226 REMARK 465 SER A 227 REMARK 465 ASP A 228 REMARK 465 LYS A 229 REMARK 465 GLU A 230 REMARK 465 LYS A 231 REMARK 465 ALA A 232 REMARK 465 LYS A 233 REMARK 465 ASP A 234 REMARK 465 LEU A 235 REMARK 465 PRO A 236 REMARK 465 THR A 237 REMARK 465 PHE A 238 REMARK 465 LYS A 239 REMARK 465 ASP A 240 REMARK 465 ASN A 241 REMARK 465 ASP A 242 REMARK 465 PHE A 243 REMARK 465 LEU A 244 REMARK 465 ASN A 245 REMARK 465 GLU A 246 REMARK 465 GLY A 247 REMARK 465 GLN A 248 REMARK 465 LYS A 249 REMARK 465 GLU A 303 REMARK 465 ASP A 304 REMARK 465 GLU A 305 REMARK 465 GLU A 306 REMARK 465 CYS A 307 REMARK 465 GLU A 308 REMARK 465 ASN A 309 REMARK 465 ASP A 310 REMARK 465 GLY A 311 REMARK 465 VAL A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 ASN A 315 REMARK 465 LEU A 316 REMARK 465 LEU A 317 REMARK 465 CYS A 318 REMARK 465 SER A 319 REMARK 465 TYR A 320 REMARK 465 GLY A 321 REMARK 465 THR A 322 REMARK 465 PRO A 323 REMARK 465 PRO A 324 REMARK 465 ASP A 325 REMARK 465 SER A 326 REMARK 465 PRO A 327 REMARK 465 GLY A 328 REMARK 465 ASN A 329 REMARK 465 LEU A 330 REMARK 465 PRO A 373 REMARK 465 TYR A 374 REMARK 465 ASP A 375 REMARK 465 THR A 376 REMARK 465 LYS A 377 REMARK 465 LYS A 378 REMARK 465 LYS A 379 REMARK 465 ALA A 380 REMARK 465 ALA A 381 REMARK 465 HIS A 382 REMARK 465 ALA A 383 REMARK 465 ALA A 384 REMARK 465 LYS A 385 REMARK 465 THR A 386 REMARK 465 VAL A 387 REMARK 465 LYS A 388 REMARK 465 HIS A 389 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 GLY A 392 REMARK 465 ALA A 393 REMARK 465 GLU A 394 REMARK 465 ILE A 395 REMARK 465 SER A 396 REMARK 465 THR A 397 REMARK 465 GLY B 25 REMARK 465 PRO B 26 REMARK 465 ASN B 27 REMARK 465 CYS B 28 REMARK 465 ALA B 29 REMARK 465 PRO B 30 REMARK 465 GLY B 31 REMARK 465 THR B 221 REMARK 465 VAL B 222 REMARK 465 ALA B 223 REMARK 465 ARG B 224 REMARK 465 GLU B 225 REMARK 465 ALA B 226 REMARK 465 SER B 227 REMARK 465 ASP B 228 REMARK 465 LYS B 229 REMARK 465 GLU B 230 REMARK 465 LYS B 231 REMARK 465 ALA B 232 REMARK 465 LYS B 233 REMARK 465 ASP B 234 REMARK 465 LEU B 235 REMARK 465 PRO B 236 REMARK 465 THR B 237 REMARK 465 PHE B 238 REMARK 465 LYS B 239 REMARK 465 ASP B 240 REMARK 465 ASN B 241 REMARK 465 ASN B 245 REMARK 465 GLU B 246 REMARK 465 GLU B 308 REMARK 465 ASN B 309 REMARK 465 ASP B 310 REMARK 465 GLY B 311 REMARK 465 VAL B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 ASN B 315 REMARK 465 LEU B 316 REMARK 465 LEU B 317 REMARK 465 CYS B 318 REMARK 465 SER B 319 REMARK 465 TYR B 320 REMARK 465 GLY B 321 REMARK 465 THR B 322 REMARK 465 PRO B 323 REMARK 465 PRO B 324 REMARK 465 ASP B 325 REMARK 465 SER B 326 REMARK 465 PRO B 327 REMARK 465 GLY B 328 REMARK 465 ASN B 329 REMARK 465 LEU B 330 REMARK 465 LEU B 331 REMARK 465 SER B 332 REMARK 465 PHE B 333 REMARK 465 PRO B 334 REMARK 465 ARG B 335 REMARK 465 PHE B 336 REMARK 465 PHE B 337 REMARK 465 GLY B 338 REMARK 465 PRO B 339 REMARK 465 TYR B 374 REMARK 465 ASP B 375 REMARK 465 THR B 376 REMARK 465 LYS B 377 REMARK 465 LYS B 378 REMARK 465 LYS B 379 REMARK 465 ALA B 380 REMARK 465 ALA B 381 REMARK 465 HIS B 382 REMARK 465 ALA B 383 REMARK 465 ALA B 384 REMARK 465 LYS B 385 REMARK 465 THR B 386 REMARK 465 VAL B 387 REMARK 465 LYS B 388 REMARK 465 HIS B 389 REMARK 465 GLY B 390 REMARK 465 ALA B 391 REMARK 465 GLY B 392 REMARK 465 ALA B 393 REMARK 465 GLU B 394 REMARK 465 ILE B 395 REMARK 465 SER B 396 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 LYS A 86 CE NZ REMARK 470 GLU A 87 CD OE1 OE2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 135 SG REMARK 470 ARG A 138 CZ NH1 NH2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LYS A 218 CG CD CE NZ REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 265 CG CD CE NZ REMARK 470 LYS A 275 CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 MET A 296 CG SD CE REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 ARG A 301 CD NE CZ NH1 NH2 REMARK 470 LEU A 331 CG CD1 CD2 REMARK 470 SER A 332 OG REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 SER A 356 OG REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 LYS A 360 CG CD CE NZ REMARK 470 VAL A 398 CG1 CG2 REMARK 470 GLU A 401 OE1 OE2 REMARK 470 SER A 404 OG REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 ARG A 406 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 PHE A 410 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 414 CG1 CG2 CD1 REMARK 470 LYS B 32 CG CD CE NZ REMARK 470 ARG B 37 NE CZ NH1 NH2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 SER B 75 OG REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 LYS B 86 CE NZ REMARK 470 ARG B 123 NE CZ NH1 NH2 REMARK 470 ASP B 130 CG OD1 OD2 REMARK 470 GLN B 132 CG CD OE1 NE2 REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 CYS B 135 SG REMARK 470 THR B 137 OG1 CG2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 159 CG CD OE1 OE2 REMARK 470 ARG B 208 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 ASP B 242 CG OD1 OD2 REMARK 470 GLN B 248 CG CD OE1 NE2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 GLN B 293 CG CD OE1 NE2 REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 MET B 296 CG SD CE REMARK 470 GLU B 299 CD OE1 OE2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 305 CG CD OE1 OE2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 CYS B 307 SG REMARK 470 GLU B 341 OE1 OE2 REMARK 470 GLU B 355 CG CD OE1 OE2 REMARK 470 SER B 356 OG REMARK 470 LYS B 360 CG CD CE NZ REMARK 470 THR B 397 OG1 CG2 REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 GLN B 402 CG CD OE1 NE2 REMARK 470 LYS B 405 CE NZ REMARK 470 ARG B 406 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 409 CG CD OE1 OE2 REMARK 470 ILE B 414 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 538 O HOH B 664 1655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -79.01 -76.11 REMARK 500 CYS A 99 54.43 34.36 REMARK 500 ASP A 130 -93.76 -77.35 REMARK 500 THR A 137 -102.75 -126.23 REMARK 500 ARG A 145 13.85 51.85 REMARK 500 PHE A 336 -72.91 -82.29 REMARK 500 PHE A 337 130.21 61.93 REMARK 500 VAL A 346 -62.37 -91.04 REMARK 500 PRO A 358 -85.16 -56.87 REMARK 500 ASP A 369 71.17 59.77 REMARK 500 LEU A 371 -98.43 -104.16 REMARK 500 VAL B 33 111.61 72.54 REMARK 500 SER B 131 135.40 84.60 REMARK 500 ARG B 145 17.83 55.46 REMARK 500 ARG B 208 -45.19 -137.45 REMARK 500 LYS B 218 31.90 -94.25 REMARK 500 PHE B 243 -36.92 -138.44 REMARK 500 GLU B 303 46.66 -98.04 REMARK 500 GLU B 305 -60.36 -13.10 REMARK 500 VAL B 346 -62.84 -93.05 REMARK 500 PRO B 358 -73.27 -27.33 REMARK 500 ASP B 369 77.09 64.70 REMARK 500 LEU B 371 -107.48 -109.61 REMARK 500 THR B 372 74.41 -166.91 REMARK 500 VAL B 398 -167.44 -117.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 340 GLU A 341 -149.55 REMARK 500 REMARK 500 REMARK: NULL DBREF 7N81 A 32 416 UNP P78356 PI42B_HUMAN 32 416 DBREF 7N81 B 32 416 UNP P78356 PI42B_HUMAN 32 416 SEQADV 7N81 GLY A 25 UNP P78356 EXPRESSION TAG SEQADV 7N81 PRO A 26 UNP P78356 EXPRESSION TAG SEQADV 7N81 ASN A 27 UNP P78356 EXPRESSION TAG SEQADV 7N81 CYS A 28 UNP P78356 EXPRESSION TAG SEQADV 7N81 ALA A 29 UNP P78356 EXPRESSION TAG SEQADV 7N81 PRO A 30 UNP P78356 EXPRESSION TAG SEQADV 7N81 GLY A 31 UNP P78356 EXPRESSION TAG SEQADV 7N81 GLY B 25 UNP P78356 EXPRESSION TAG SEQADV 7N81 PRO B 26 UNP P78356 EXPRESSION TAG SEQADV 7N81 ASN B 27 UNP P78356 EXPRESSION TAG SEQADV 7N81 CYS B 28 UNP P78356 EXPRESSION TAG SEQADV 7N81 ALA B 29 UNP P78356 EXPRESSION TAG SEQADV 7N81 PRO B 30 UNP P78356 EXPRESSION TAG SEQADV 7N81 GLY B 31 UNP P78356 EXPRESSION TAG SEQRES 1 A 392 GLY PRO ASN CYS ALA PRO GLY LYS VAL LYS LEU PHE ARG SEQRES 2 A 392 ALA SER GLU PRO ILE LEU SER VAL LEU MET TRP GLY VAL SEQRES 3 A 392 ASN HIS THR ILE ASN GLU LEU SER ASN VAL PRO VAL PRO SEQRES 4 A 392 VAL MET LEU MET PRO ASP ASP PHE LYS ALA TYR SER LYS SEQRES 5 A 392 ILE LYS VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN LEU SEQRES 6 A 392 PRO SER ARG PHE LYS PHE LYS GLU TYR CYS PRO MET VAL SEQRES 7 A 392 PHE ARG ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP GLN SEQRES 8 A 392 ASP TYR GLN ASN SER VAL THR ARG SER ALA PRO ILE ASN SEQRES 9 A 392 SER ASP SER GLN GLY ARG CYS GLY THR ARG PHE LEU THR SEQRES 10 A 392 THR TYR ASP ARG ARG PHE VAL ILE LYS THR VAL SER SER SEQRES 11 A 392 GLU ASP VAL ALA GLU MET HIS ASN ILE LEU LYS LYS TYR SEQRES 12 A 392 HIS GLN PHE ILE VAL GLU CYS HIS GLY ASN THR LEU LEU SEQRES 13 A 392 PRO GLN PHE LEU GLY MET TYR ARG LEU THR VAL ASP GLY SEQRES 14 A 392 VAL GLU THR TYR MET VAL VAL THR ARG ASN VAL PHE SER SEQRES 15 A 392 HIS ARG LEU THR VAL HIS ARG LYS TYR ASP LEU LYS GLY SEQRES 16 A 392 SER THR VAL ALA ARG GLU ALA SER ASP LYS GLU LYS ALA SEQRES 17 A 392 LYS ASP LEU PRO THR PHE LYS ASP ASN ASP PHE LEU ASN SEQRES 18 A 392 GLU GLY GLN LYS LEU HIS VAL GLY GLU GLU SER LYS LYS SEQRES 19 A 392 ASN PHE LEU GLU LYS LEU LYS ARG ASP VAL GLU PHE LEU SEQRES 20 A 392 ALA GLN LEU LYS ILE MET ASP TYR SER LEU LEU VAL GLY SEQRES 21 A 392 ILE HIS ASP VAL ASP ARG ALA GLU GLN GLU GLU MET GLU SEQRES 22 A 392 VAL GLU GLU ARG ALA GLU ASP GLU GLU CYS GLU ASN ASP SEQRES 23 A 392 GLY VAL GLY GLY ASN LEU LEU CYS SER TYR GLY THR PRO SEQRES 24 A 392 PRO ASP SER PRO GLY ASN LEU LEU SER PHE PRO ARG PHE SEQRES 25 A 392 PHE GLY PRO GLY GLU PHE ASP PRO SER VAL ASP VAL TYR SEQRES 26 A 392 ALA MET LYS SER HIS GLU SER SER PRO LYS LYS GLU VAL SEQRES 27 A 392 TYR PHE MET ALA ILE ILE ASP ILE LEU THR PRO TYR ASP SEQRES 28 A 392 THR LYS LYS LYS ALA ALA HIS ALA ALA LYS THR VAL LYS SEQRES 29 A 392 HIS GLY ALA GLY ALA GLU ILE SER THR VAL ASN PRO GLU SEQRES 30 A 392 GLN TYR SER LYS ARG PHE ASN GLU PHE MET SER ASN ILE SEQRES 31 A 392 LEU THR SEQRES 1 B 392 GLY PRO ASN CYS ALA PRO GLY LYS VAL LYS LEU PHE ARG SEQRES 2 B 392 ALA SER GLU PRO ILE LEU SER VAL LEU MET TRP GLY VAL SEQRES 3 B 392 ASN HIS THR ILE ASN GLU LEU SER ASN VAL PRO VAL PRO SEQRES 4 B 392 VAL MET LEU MET PRO ASP ASP PHE LYS ALA TYR SER LYS SEQRES 5 B 392 ILE LYS VAL ASP ASN HIS LEU PHE ASN LYS GLU ASN LEU SEQRES 6 B 392 PRO SER ARG PHE LYS PHE LYS GLU TYR CYS PRO MET VAL SEQRES 7 B 392 PHE ARG ASN LEU ARG GLU ARG PHE GLY ILE ASP ASP GLN SEQRES 8 B 392 ASP TYR GLN ASN SER VAL THR ARG SER ALA PRO ILE ASN SEQRES 9 B 392 SER ASP SER GLN GLY ARG CYS GLY THR ARG PHE LEU THR SEQRES 10 B 392 THR TYR ASP ARG ARG PHE VAL ILE LYS THR VAL SER SER SEQRES 11 B 392 GLU ASP VAL ALA GLU MET HIS ASN ILE LEU LYS LYS TYR SEQRES 12 B 392 HIS GLN PHE ILE VAL GLU CYS HIS GLY ASN THR LEU LEU SEQRES 13 B 392 PRO GLN PHE LEU GLY MET TYR ARG LEU THR VAL ASP GLY SEQRES 14 B 392 VAL GLU THR TYR MET VAL VAL THR ARG ASN VAL PHE SER SEQRES 15 B 392 HIS ARG LEU THR VAL HIS ARG LYS TYR ASP LEU LYS GLY SEQRES 16 B 392 SER THR VAL ALA ARG GLU ALA SER ASP LYS GLU LYS ALA SEQRES 17 B 392 LYS ASP LEU PRO THR PHE LYS ASP ASN ASP PHE LEU ASN SEQRES 18 B 392 GLU GLY GLN LYS LEU HIS VAL GLY GLU GLU SER LYS LYS SEQRES 19 B 392 ASN PHE LEU GLU LYS LEU LYS ARG ASP VAL GLU PHE LEU SEQRES 20 B 392 ALA GLN LEU LYS ILE MET ASP TYR SER LEU LEU VAL GLY SEQRES 21 B 392 ILE HIS ASP VAL ASP ARG ALA GLU GLN GLU GLU MET GLU SEQRES 22 B 392 VAL GLU GLU ARG ALA GLU ASP GLU GLU CYS GLU ASN ASP SEQRES 23 B 392 GLY VAL GLY GLY ASN LEU LEU CYS SER TYR GLY THR PRO SEQRES 24 B 392 PRO ASP SER PRO GLY ASN LEU LEU SER PHE PRO ARG PHE SEQRES 25 B 392 PHE GLY PRO GLY GLU PHE ASP PRO SER VAL ASP VAL TYR SEQRES 26 B 392 ALA MET LYS SER HIS GLU SER SER PRO LYS LYS GLU VAL SEQRES 27 B 392 TYR PHE MET ALA ILE ILE ASP ILE LEU THR PRO TYR ASP SEQRES 28 B 392 THR LYS LYS LYS ALA ALA HIS ALA ALA LYS THR VAL LYS SEQRES 29 B 392 HIS GLY ALA GLY ALA GLU ILE SER THR VAL ASN PRO GLU SEQRES 30 B 392 GLN TYR SER LYS ARG PHE ASN GLU PHE MET SER ASN ILE SEQRES 31 B 392 LEU THR HET HKP B 501 33 HETNAM HKP (7R)-8-CYCLOPENTYL-7-(CYCLOPENTYLMETHYL)-2-[(3,5- HETNAM 2 HKP DICHLORO-4-HYDROXYPHENYL)AMINO]-5-METHYL-7,8- HETNAM 3 HKP DIHYDROPTERIDIN-6(5H)-ONE FORMUL 3 HKP C24 H29 CL2 N5 O2 FORMUL 4 HOH *138(H2 O) HELIX 1 AA1 GLU A 40 ASN A 59 1 20 HELIX 2 AA2 MET A 67 PHE A 71 5 5 HELIX 3 AA3 CYS A 99 PHE A 110 1 12 HELIX 4 AA4 ASP A 113 ARG A 123 1 11 HELIX 5 AA5 SER A 153 CYS A 174 1 22 HELIX 6 AA6 GLY A 253 LEU A 274 1 22 HELIX 7 AA7 VAL A 288 GLU A 300 1 13 HELIX 8 AA8 ASN A 399 ASN A 413 1 15 HELIX 9 AA9 GLU B 40 ASN B 59 1 20 HELIX 10 AB1 MET B 67 LYS B 72 5 6 HELIX 11 AB2 CYS B 99 PHE B 110 1 12 HELIX 12 AB3 ASP B 113 ARG B 123 1 11 HELIX 13 AB4 SER B 153 CYS B 174 1 22 HELIX 14 AB5 GLY B 253 GLN B 273 1 21 HELIX 15 AB6 VAL B 288 GLU B 295 1 8 HELIX 16 AB7 GLU B 297 GLU B 303 1 7 HELIX 17 AB8 ASN B 399 ILE B 414 1 16 SHEET 1 AA114 ILE A 127 ASN A 128 0 SHEET 2 AA114 PHE A 139 THR A 141 -1 O THR A 141 N ILE A 127 SHEET 3 AA114 PHE A 147 VAL A 152 -1 O ILE A 149 N LEU A 140 SHEET 4 AA114 VAL A 194 ARG A 202 -1 O THR A 201 N VAL A 148 SHEET 5 AA114 PHE A 183 VAL A 191 -1 N LEU A 184 O VAL A 200 SHEET 6 AA114 ARG A 92 TYR A 98 -1 N LYS A 96 O ARG A 188 SHEET 7 AA114 TYR A 74 ASP A 80 -1 N VAL A 79 O PHE A 93 SHEET 8 AA114 TYR B 74 HIS B 82 -1 O LYS B 78 N LYS A 78 SHEET 9 AA114 ARG B 92 TYR B 98 -1 O PHE B 93 N VAL B 79 SHEET 10 AA114 PHE B 183 VAL B 191 -1 O MET B 186 N TYR B 98 SHEET 11 AA114 VAL B 194 ARG B 202 -1 O VAL B 200 N LEU B 184 SHEET 12 AA114 PHE B 147 VAL B 152 -1 N VAL B 152 O TYR B 197 SHEET 13 AA114 PHE B 139 THR B 141 -1 N LEU B 140 O ILE B 149 SHEET 14 AA114 ILE B 127 ASN B 128 -1 N ILE B 127 O THR B 141 SHEET 1 AA2 4 ARG A 213 LEU A 217 0 SHEET 2 AA2 4 SER A 280 ASP A 287 -1 O VAL A 283 N TYR A 215 SHEET 3 AA2 4 GLU A 361 ILE A 368 -1 O ILE A 368 N SER A 280 SHEET 4 AA2 4 ALA A 350 LYS A 352 -1 N MET A 351 O TYR A 363 SHEET 1 AA3 4 ARG B 213 LEU B 217 0 SHEET 2 AA3 4 SER B 280 ASP B 287 -1 O VAL B 283 N TYR B 215 SHEET 3 AA3 4 GLU B 361 ILE B 368 -1 O VAL B 362 N HIS B 286 SHEET 4 AA3 4 ALA B 350 LYS B 352 -1 N MET B 351 O TYR B 363 SHEET 1 AA4 2 LEU B 250 HIS B 251 0 SHEET 2 AA4 2 LEU B 415 THR B 416 1 O THR B 416 N LEU B 250 CRYST1 73.523 51.748 107.606 90.00 95.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013601 0.000000 0.001282 0.00000 SCALE2 0.000000 0.019324 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009334 0.00000