HEADER TRANSFERASE/TRANSFERASE INHIBITOR 15-JUN-21 7N8M TITLE PPTT PAP(COA) 8978B COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 4'-PHOSPHOPANTETHEINYL TRANSFERASE PPTT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PPTASE; COMPND 5 EC: 2.7.8.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: PPTT, RV2794C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS INHIBITOR, STRUCTURAL GENOMICS, PSI-BIOLOGY, TB STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, TBSGC, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MOSIOR,J.C.SACCHETTINI,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 3 18-OCT-23 7N8M 1 REMARK REVDAT 2 23-FEB-22 7N8M 1 JRNL REVDAT 1 02-FEB-22 7N8M 0 JRNL AUTH S.OTTAVI,S.M.SCARRY,J.MOSIOR,Y.LING,J.ROBERTS,A.SINGH, JRNL AUTH 2 D.ZHANG,L.GOULLIEUX,C.ROUBERT,E.BACQUE,H.R.LAGIAKOS, JRNL AUTH 3 J.VENDOME,F.MORACA,K.LI,A.J.PERKOWSKI,R.RAMESH,M.M.BOWLER, JRNL AUTH 4 W.TRACY,V.A.FEHER,J.C.SACCHETTINI,B.S.GOLD,C.F.NATHAN,J.AUBE JRNL TITL IN VITRO AND IN VIVO INHIBITION OF THE MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS PHOSPHOPANTETHEINYL TRANSFERASE PPTT BY JRNL TITL 3 AMIDINOUREAS. JRNL REF J.MED.CHEM. V. 65 1996 2022 JRNL REFN ISSN 0022-2623 JRNL PMID 35044775 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01565 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3126 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 78465 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.640 REMARK 3 FREE R VALUE TEST SET COUNT : 2855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7900 - 4.2600 0.96 3760 141 0.1607 0.2086 REMARK 3 2 4.2600 - 3.3800 1.00 3821 139 0.1536 0.1732 REMARK 3 3 3.3800 - 2.9500 1.00 3826 144 0.1671 0.1975 REMARK 3 4 2.9500 - 2.6800 1.00 3807 142 0.1772 0.1819 REMARK 3 5 2.6800 - 2.4900 1.00 3784 140 0.1774 0.1986 REMARK 3 6 2.4900 - 2.3500 1.00 3781 151 0.1745 0.2151 REMARK 3 7 2.3500 - 2.2300 1.00 3844 137 0.1720 0.1840 REMARK 3 8 2.2300 - 2.1300 1.00 3757 150 0.1688 0.1978 REMARK 3 9 2.1300 - 2.0500 1.00 3789 137 0.1686 0.1981 REMARK 3 10 2.0500 - 1.9800 1.00 3780 143 0.1685 0.1990 REMARK 3 11 1.9800 - 1.9200 1.00 3790 146 0.1795 0.2065 REMARK 3 12 1.9200 - 1.8600 1.00 3768 152 0.1810 0.2092 REMARK 3 13 1.8600 - 1.8100 1.00 3794 128 0.1857 0.2317 REMARK 3 14 1.8100 - 1.7700 1.00 3729 149 0.1948 0.2647 REMARK 3 15 1.7700 - 1.7300 1.00 3768 141 0.2025 0.2217 REMARK 3 16 1.7300 - 1.6900 1.00 3779 152 0.2016 0.2548 REMARK 3 17 1.6900 - 1.6600 1.00 3773 136 0.2135 0.2425 REMARK 3 18 1.6600 - 1.6300 0.99 3719 142 0.2138 0.2524 REMARK 3 19 1.6300 - 1.6000 1.00 3797 135 0.2210 0.2547 REMARK 3 20 1.6000 - 1.5700 0.99 3744 150 0.2374 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.808 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3752 REMARK 3 ANGLE : 0.993 5148 REMARK 3 CHIRALITY : 0.058 566 REMARK 3 PLANARITY : 0.006 659 REMARK 3 DIHEDRAL : 14.458 2176 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 5 THROUGH 12 OR REMARK 3 RESID 18 THROUGH 42 OR (RESID 43 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 44 THROUGH 48 OR REMARK 3 RESID 50 THROUGH 60 OR RESID 62 THROUGH REMARK 3 64 OR RESID 66 THROUGH 72 OR RESID 74 REMARK 3 THROUGH 84 OR RESID 86 OR RESID 88 REMARK 3 THROUGH 105 OR RESID 107 THROUGH 153 OR REMARK 3 RESID 156 THROUGH 178 OR RESID 180 REMARK 3 THROUGH 207 OR RESID 209 THROUGH 217 OR REMARK 3 RESID 219 THROUGH 229)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 5 THROUGH 12 OR REMARK 3 RESID 18 THROUGH 48 OR RESID 50 THROUGH REMARK 3 60 OR RESID 62 THROUGH 64 OR RESID 66 REMARK 3 THROUGH 72 OR RESID 74 THROUGH 76 OR REMARK 3 (RESID 77 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 78 THROUGH 84 OR RESID 86 OR RESID REMARK 3 88 THROUGH 104 OR (RESID 105 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 OR NAME CG OR NAME CD OR NAME NE )) OR REMARK 3 RESID 107 THROUGH 139 OR (RESID 140 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 141 THROUGH 153 OR REMARK 3 RESID 156 THROUGH 178 OR RESID 180 REMARK 3 THROUGH 184 OR (RESID 185 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB OR REMARK 3 NAME OG1)) OR RESID 186 THROUGH 189 OR REMARK 3 (RESID 190 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME NE )) OR RESID 191 THROUGH 207 REMARK 3 OR RESID 209 THROUGH 217 OR RESID 219 REMARK 3 THROUGH 229)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7N8M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78467 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 39.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6CT5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 6.7, 1.8M REMARK 280 MAGNESIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.37950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.85450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.37950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.85450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 620 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 621 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 13 REMARK 465 THR A 14 REMARK 465 VAL A 15 REMARK 465 PHE A 16 REMARK 465 GLU A 230 REMARK 465 ASN A 231 REMARK 465 LEU A 232 REMARK 465 TYR A 233 REMARK 465 PHE A 234 REMARK 465 GLN A 235 REMARK 465 SER A 236 REMARK 465 ALA A 237 REMARK 465 GLY A 238 REMARK 465 HIS A 239 REMARK 465 HIS A 240 REMARK 465 HIS A 241 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 HIS A 244 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 VAL B 3 REMARK 465 THR B 14 REMARK 465 VAL B 15 REMARK 465 PHE B 16 REMARK 465 GLU B 230 REMARK 465 ASN B 231 REMARK 465 LEU B 232 REMARK 465 TYR B 233 REMARK 465 PHE B 234 REMARK 465 GLN B 235 REMARK 465 SER B 236 REMARK 465 ALA B 237 REMARK 465 GLY B 238 REMARK 465 HIS B 239 REMARK 465 HIS B 240 REMARK 465 HIS B 241 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 HIS B 244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 17 N CG CD OE1 OE2 REMARK 470 LYS A 47 CD CE NZ REMARK 470 ASP A 77 OD1 OD2 REMARK 470 ARG A 105 CZ NH1 NH2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 THR A 185 CG2 REMARK 470 ARG A 190 CZ NH1 NH2 REMARK 470 GLY B 4 N CA REMARK 470 ALA B 13 CA C O CB REMARK 470 GLU B 17 N CB CG CD OE1 OE2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 47 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 415 O HOH A 562 2.02 REMARK 500 O HOH A 515 O HOH A 562 2.04 REMARK 500 O HOH A 594 O HOH B 612 2.07 REMARK 500 O HOH A 433 O HOH A 564 2.07 REMARK 500 O HOH B 502 O HOH B 600 2.08 REMARK 500 O HOH A 600 O HOH A 606 2.08 REMARK 500 O HOH A 541 O HOH A 563 2.10 REMARK 500 O HOH A 499 O HOH A 579 2.13 REMARK 500 O HOH B 603 O HOH B 626 2.14 REMARK 500 O HOH B 442 O HOH B 574 2.14 REMARK 500 O HOH A 530 O HOH A 562 2.14 REMARK 500 O HOH B 553 O HOH B 594 2.16 REMARK 500 O HOH B 403 O HOH B 571 2.16 REMARK 500 O HOH A 411 O HOH A 588 2.16 REMARK 500 O HOH B 569 O HOH B 593 2.16 REMARK 500 O HOH A 543 O HOH B 438 2.17 REMARK 500 O HOH A 441 O HOH B 625 2.17 REMARK 500 O HOH A 422 O HOH A 569 2.17 REMARK 500 O HOH B 499 O HOH B 597 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 145 -12.02 66.96 REMARK 500 THR A 208 -61.07 -122.89 REMARK 500 ALA B 145 -13.03 70.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 620 DISTANCE = 8.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 93 O REMARK 620 2 COA A 301 O2A 84.8 REMARK 620 3 HOH A 451 O 88.5 173.3 REMARK 620 4 HOH A 506 O 79.3 96.0 83.4 REMARK 620 5 HOH A 516 O 169.6 91.7 95.0 91.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 114 OD1 REMARK 620 2 COA A 301 O3A 86.2 REMARK 620 3 HOH A 412 O 98.1 84.9 REMARK 620 4 HOH A 419 O 89.9 174.2 91.5 REMARK 620 5 HOH A 460 O 175.7 97.6 84.3 86.5 REMARK 620 6 HOH A 479 O 95.0 85.8 163.4 98.8 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 407 O REMARK 620 2 HOH A 429 O 175.2 REMARK 620 3 HOH A 475 O 87.2 95.4 REMARK 620 4 HOH A 477 O 89.6 86.5 87.3 REMARK 620 5 HOH A 545 O 80.7 96.7 167.8 92.0 REMARK 620 6 HOH A 612 O 93.2 90.8 91.7 177.0 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 596 O REMARK 620 2 HOH B 491 O 88.4 REMARK 620 3 HOH B 498 O 90.1 173.2 REMARK 620 4 HOH B 521 O 90.1 91.0 95.6 REMARK 620 5 HOH B 578 O 162.4 74.0 107.1 91.9 REMARK 620 6 HOH B 621 O 89.6 94.3 79.1 174.7 90.0 REMARK 620 7 HOH B 621 O 89.6 94.3 79.1 174.7 90.0 0.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 93 O REMARK 620 2 COA B 301 O3A 85.1 REMARK 620 3 HOH B 449 O 92.7 177.7 REMARK 620 4 HOH B 534 O 82.6 94.7 85.8 REMARK 620 5 HOH B 542 O 169.8 93.1 89.2 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 114 OD1 REMARK 620 2 COA B 301 O1A 85.7 REMARK 620 3 HOH B 421 O 89.3 172.8 REMARK 620 4 HOH B 425 O 98.3 82.9 92.7 REMARK 620 5 HOH B 476 O 94.8 88.2 97.4 163.5 REMARK 620 6 HOH B 483 O 175.2 98.9 86.2 83.6 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 306 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 440 O REMARK 620 2 HOH B 443 O 176.9 REMARK 620 3 HOH B 453 O 88.1 89.6 REMARK 620 4 HOH B 493 O 86.9 95.2 89.0 REMARK 620 5 HOH B 583 O 89.0 88.9 89.2 175.6 REMARK 620 6 HOH B 632 O 92.1 90.2 179.8 90.9 90.9 REMARK 620 N 1 2 3 4 5 DBREF 7N8M A 1 227 UNP O33336 PPTT_MYCTU 1 227 DBREF 7N8M B 1 227 UNP O33336 PPTT_MYCTU 1 227 SEQADV 7N8M ALA A 228 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLY A 229 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLU A 230 UNP O33336 EXPRESSION TAG SEQADV 7N8M ASN A 231 UNP O33336 EXPRESSION TAG SEQADV 7N8M LEU A 232 UNP O33336 EXPRESSION TAG SEQADV 7N8M TYR A 233 UNP O33336 EXPRESSION TAG SEQADV 7N8M PHE A 234 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLN A 235 UNP O33336 EXPRESSION TAG SEQADV 7N8M SER A 236 UNP O33336 EXPRESSION TAG SEQADV 7N8M ALA A 237 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLY A 238 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS A 239 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS A 240 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS A 241 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS A 242 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS A 243 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS A 244 UNP O33336 EXPRESSION TAG SEQADV 7N8M ALA B 228 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLY B 229 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLU B 230 UNP O33336 EXPRESSION TAG SEQADV 7N8M ASN B 231 UNP O33336 EXPRESSION TAG SEQADV 7N8M LEU B 232 UNP O33336 EXPRESSION TAG SEQADV 7N8M TYR B 233 UNP O33336 EXPRESSION TAG SEQADV 7N8M PHE B 234 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLN B 235 UNP O33336 EXPRESSION TAG SEQADV 7N8M SER B 236 UNP O33336 EXPRESSION TAG SEQADV 7N8M ALA B 237 UNP O33336 EXPRESSION TAG SEQADV 7N8M GLY B 238 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS B 239 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS B 240 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS B 241 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS B 242 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS B 243 UNP O33336 EXPRESSION TAG SEQADV 7N8M HIS B 244 UNP O33336 EXPRESSION TAG SEQRES 1 A 244 MET THR VAL GLY THR LEU VAL ALA SER VAL LEU PRO ALA SEQRES 2 A 244 THR VAL PHE GLU ASP LEU ALA TYR ALA GLU LEU TYR SER SEQRES 3 A 244 ASP PRO PRO GLY LEU THR PRO LEU PRO GLU GLU ALA PRO SEQRES 4 A 244 LEU ILE ALA ARG SER VAL ALA LYS ARG ARG ASN GLU PHE SEQRES 5 A 244 ILE THR VAL ARG HIS CYS ALA ARG ILE ALA LEU ASP GLN SEQRES 6 A 244 LEU GLY VAL PRO PRO ALA PRO ILE LEU LYS GLY ASP LYS SEQRES 7 A 244 GLY GLU PRO CYS TRP PRO ASP GLY MET VAL GLY SER LEU SEQRES 8 A 244 THR HIS CYS ALA GLY TYR ARG GLY ALA VAL VAL GLY ARG SEQRES 9 A 244 ARG ASP ALA VAL ARG SER VAL GLY ILE ASP ALA GLU PRO SEQRES 10 A 244 HIS ASP VAL LEU PRO ASN GLY VAL LEU ASP ALA ILE SER SEQRES 11 A 244 LEU PRO ALA GLU ARG ALA ASP MET PRO ARG THR MET PRO SEQRES 12 A 244 ALA ALA LEU HIS TRP ASP ARG ILE LEU PHE CYS ALA LYS SEQRES 13 A 244 GLU ALA THR TYR LYS ALA TRP PHE PRO LEU THR LYS ARG SEQRES 14 A 244 TRP LEU GLY PHE GLU ASP ALA HIS ILE THR PHE GLU THR SEQRES 15 A 244 ASP SER THR GLY TRP THR GLY ARG PHE VAL SER ARG ILE SEQRES 16 A 244 LEU ILE ASP GLY SER THR LEU SER GLY PRO PRO LEU THR SEQRES 17 A 244 THR LEU ARG GLY ARG TRP SER VAL GLU ARG GLY LEU VAL SEQRES 18 A 244 LEU THR ALA ILE VAL LEU ALA GLY GLU ASN LEU TYR PHE SEQRES 19 A 244 GLN SER ALA GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 244 MET THR VAL GLY THR LEU VAL ALA SER VAL LEU PRO ALA SEQRES 2 B 244 THR VAL PHE GLU ASP LEU ALA TYR ALA GLU LEU TYR SER SEQRES 3 B 244 ASP PRO PRO GLY LEU THR PRO LEU PRO GLU GLU ALA PRO SEQRES 4 B 244 LEU ILE ALA ARG SER VAL ALA LYS ARG ARG ASN GLU PHE SEQRES 5 B 244 ILE THR VAL ARG HIS CYS ALA ARG ILE ALA LEU ASP GLN SEQRES 6 B 244 LEU GLY VAL PRO PRO ALA PRO ILE LEU LYS GLY ASP LYS SEQRES 7 B 244 GLY GLU PRO CYS TRP PRO ASP GLY MET VAL GLY SER LEU SEQRES 8 B 244 THR HIS CYS ALA GLY TYR ARG GLY ALA VAL VAL GLY ARG SEQRES 9 B 244 ARG ASP ALA VAL ARG SER VAL GLY ILE ASP ALA GLU PRO SEQRES 10 B 244 HIS ASP VAL LEU PRO ASN GLY VAL LEU ASP ALA ILE SER SEQRES 11 B 244 LEU PRO ALA GLU ARG ALA ASP MET PRO ARG THR MET PRO SEQRES 12 B 244 ALA ALA LEU HIS TRP ASP ARG ILE LEU PHE CYS ALA LYS SEQRES 13 B 244 GLU ALA THR TYR LYS ALA TRP PHE PRO LEU THR LYS ARG SEQRES 14 B 244 TRP LEU GLY PHE GLU ASP ALA HIS ILE THR PHE GLU THR SEQRES 15 B 244 ASP SER THR GLY TRP THR GLY ARG PHE VAL SER ARG ILE SEQRES 16 B 244 LEU ILE ASP GLY SER THR LEU SER GLY PRO PRO LEU THR SEQRES 17 B 244 THR LEU ARG GLY ARG TRP SER VAL GLU ARG GLY LEU VAL SEQRES 18 B 244 LEU THR ALA ILE VAL LEU ALA GLY GLU ASN LEU TYR PHE SEQRES 19 B 244 GLN SER ALA GLY HIS HIS HIS HIS HIS HIS HET COA A 301 27 HET 17I A 302 18 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HET GOL A 306 6 HET DMS A 307 4 HET DMS A 308 4 HET DMS A 309 4 HET COA B 301 27 HET 17I B 302 18 HET 17I B 303 36 HET MG B 304 1 HET MG B 305 1 HET MG B 306 1 HET MG B 307 1 HET DMS B 308 4 HETNAM COA COENZYME A HETNAM 17I N-(2,6-DIETHYLPHENYL)-N'-(N-METHYLCARBAMIMIDOYL)UREA HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM DMS DIMETHYL SULFOXIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 17I 3(C13 H20 N4 O) FORMUL 5 MG 7(MG 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 9 DMS 4(C2 H6 O S) FORMUL 20 HOH *455(H2 O) HELIX 1 AA1 LEU A 6 LEU A 11 5 6 HELIX 2 AA2 GLU A 37 ALA A 42 5 6 HELIX 3 AA3 VAL A 45 LEU A 66 1 22 HELIX 4 AA4 GLY A 124 SER A 130 1 7 HELIX 5 AA5 LEU A 131 MET A 142 1 12 HELIX 6 AA6 HIS A 147 LYS A 168 1 22 HELIX 7 AA7 GLY A 172 GLU A 174 5 3 HELIX 8 AA8 LEU B 6 LEU B 11 5 6 HELIX 9 AA9 GLU B 37 ALA B 42 5 6 HELIX 10 AB1 VAL B 45 LEU B 66 1 22 HELIX 11 AB2 GLY B 124 SER B 130 1 7 HELIX 12 AB3 LEU B 131 MET B 142 1 12 HELIX 13 AB4 HIS B 147 LYS B 168 1 22 HELIX 14 AB5 GLY B 172 GLU B 174 5 3 SHEET 1 AA1 3 LEU A 19 LEU A 24 0 SHEET 2 AA1 3 TYR A 97 ARG A 104 -1 O VAL A 102 N ALA A 20 SHEET 3 AA1 3 MET A 87 CYS A 94 -1 N VAL A 88 O GLY A 103 SHEET 1 AA2 5 VAL A 108 PRO A 117 0 SHEET 2 AA2 5 LEU A 220 ALA A 228 -1 O VAL A 221 N GLU A 116 SHEET 3 AA2 5 THR A 209 GLU A 217 -1 N SER A 215 O LEU A 222 SHEET 4 AA2 5 THR A 188 ILE A 195 -1 N SER A 193 O LEU A 210 SHEET 5 AA2 5 ALA A 176 PHE A 180 -1 N HIS A 177 O ARG A 194 SHEET 1 AA3 3 LEU B 19 LEU B 24 0 SHEET 2 AA3 3 TYR B 97 ARG B 104 -1 O VAL B 102 N ALA B 20 SHEET 3 AA3 3 MET B 87 CYS B 94 -1 N VAL B 88 O GLY B 103 SHEET 1 AA4 2 LEU B 74 LYS B 75 0 SHEET 2 AA4 2 PRO B 81 CYS B 82 -1 O CYS B 82 N LEU B 74 SHEET 1 AA5 5 VAL B 108 PRO B 117 0 SHEET 2 AA5 5 LEU B 220 ALA B 228 -1 O VAL B 221 N GLU B 116 SHEET 3 AA5 5 THR B 209 GLU B 217 -1 N SER B 215 O LEU B 222 SHEET 4 AA5 5 THR B 188 ILE B 195 -1 N SER B 193 O LEU B 210 SHEET 5 AA5 5 ALA B 176 THR B 182 -1 N HIS B 177 O ARG B 194 LINK O HIS A 93 MG MG A 303 1555 1555 2.26 LINK OD1 ASP A 114 MG MG A 304 1555 1555 1.99 LINK O2A COA A 301 MG MG A 303 1555 1555 2.00 LINK O3A COA A 301 MG MG A 304 1555 1555 2.02 LINK MG MG A 303 O HOH A 451 1555 1555 2.09 LINK MG MG A 303 O HOH A 506 1555 1555 2.25 LINK MG MG A 303 O HOH A 516 1555 1555 2.05 LINK MG MG A 304 O HOH A 412 1555 1555 2.11 LINK MG MG A 304 O HOH A 419 1555 1555 2.02 LINK MG MG A 304 O HOH A 460 1555 1555 2.20 LINK MG MG A 304 O HOH A 479 1555 1555 2.12 LINK MG MG A 305 O HOH A 407 1555 4556 2.06 LINK MG MG A 305 O HOH A 429 1555 1555 2.03 LINK MG MG A 305 O HOH A 475 1555 1555 2.12 LINK MG MG A 305 O HOH A 477 1555 1555 2.06 LINK MG MG A 305 O HOH A 545 1555 4556 2.03 LINK MG MG A 305 O HOH A 612 1555 4556 2.11 LINK O HOH A 596 MG MG B 307 2555 1555 2.16 LINK O HIS B 93 MG MG B 305 1555 1555 2.21 LINK OD1 ASP B 114 MG MG B 304 1555 1555 1.99 LINK O1A COA B 301 MG MG B 304 1555 1555 2.05 LINK O3A COA B 301 MG MG B 305 1555 1555 1.96 LINK MG MG B 304 O HOH B 421 1555 1555 2.07 LINK MG MG B 304 O HOH B 425 1555 1555 2.17 LINK MG MG B 304 O HOH B 476 1555 1555 2.13 LINK MG MG B 304 O HOH B 483 1555 1555 2.17 LINK MG MG B 305 O HOH B 449 1555 1555 2.05 LINK MG MG B 305 O HOH B 534 1555 1555 2.21 LINK MG MG B 305 O HOH B 542 1555 1555 2.09 LINK MG MG B 306 O HOH B 440 1555 4545 2.14 LINK MG MG B 306 O HOH B 443 1555 1555 2.08 LINK MG MG B 306 O HOH B 453 1555 1555 2.06 LINK MG MG B 306 O HOH B 493 1555 1555 2.05 LINK MG MG B 306 O HOH B 583 1555 4545 2.14 LINK MG MG B 306 O HOH B 632 1555 4545 2.05 LINK MG MG B 307 O HOH B 491 1555 2555 1.97 LINK MG MG B 307 O HOH B 498 1555 1555 2.28 LINK MG MG B 307 O HOH B 521 1555 1555 1.96 LINK MG MG B 307 O HOH B 578 1555 2555 2.18 LINK MG MG B 307 O HOH B 621 1555 1555 2.16 LINK MG MG B 307 O HOH B 621 1555 2555 2.16 CRYST1 134.759 63.709 79.669 90.00 123.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007421 0.000000 0.004881 0.00000 SCALE2 0.000000 0.015696 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015024 0.00000