HEADER TRANSFERASE/INHIBITOR 16-JUN-21 7N93 TITLE P70 S6K1 IN COMPLEX WITH MSC2363318A-1 CAVEAT 7N93 THERE IS A LARGE DIFFERENCE BETWEEN THE REPORTED (0.2115) CAVEAT 2 7N93 AND CALCULATED (0.2417) R_WORK. THERE IS A LARGE DIFFERENCE CAVEAT 3 7N93 BETWEEN THE REPORTED (0.2900) AND CALCULATED (0.3106) CAVEAT 4 7N93 R_FREE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE BETA-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (81-421) DIGEST; COMPND 5 SYNONYM: S6K-BETA-1,S6K1,70 KDA RIBOSOMAL PROTEIN S6 KINASE 1, COMPND 6 P70S6K1,P70-S6K 1,RIBOSOMAL PROTEIN S6 KINASE I,SERINE/THREONINE- COMPND 7 PROTEIN KINASE 14A,P70 RIBOSOMAL S6 KINASE ALPHA,P70 S6 KINASE ALPHA, COMPND 8 P70 S6K-ALPHA,P70 S6KA; COMPND 9 EC: 2.7.11.1; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS6KB1, STK14A; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE DOMAIN, INHIBITOR, TRANSFERASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.MOCHALKIN REVDAT 3 18-OCT-23 7N93 1 REMARK REVDAT 2 23-NOV-22 7N93 1 JRNL REVDAT 1 06-JUL-22 7N93 0 JRNL AUTH L.DESELM,B.HUCK,R.LAN,C.NEAGU,J.POTNICK,Y.XIAO,X.CHEN, JRNL AUTH 2 R.JONES,T.E.RICHARDSON,B.H.HEASLEY,T.HAXELL,J.MOORE,H.TIAN, JRNL AUTH 3 K.GEORGI,F.ROHDICH,A.SUTTON,T.JOHNSON,I.MOCHALKIN,J.JACKSON, JRNL AUTH 4 J.LIN,L.CROWLEY,A.MACHL,A.CLARK,E.WILKER,B.SHERER, JRNL AUTH 5 A.GOUTOPOULOS JRNL TITL IDENTIFICATION OF CLINICAL CANDIDATE M2698, A DUAL P70S6K JRNL TITL 2 AND AKT INHIBITOR, FOR TREATMENT OF PAM PATHWAY-ALTERED JRNL TITL 3 CANCERS. JRNL REF J.MED.CHEM. V. 64 14603 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34596404 JRNL DOI 10.1021/ACS.JMEDCHEM.1C01087 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 941 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4970 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.430 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.360 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.003 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5179 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6992 ; 1.208 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 621 ; 5.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;36.242 ;23.853 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 936 ;19.141 ;15.016 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;19.578 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 747 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3872 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 84 A 418 6 REMARK 3 1 B 84 B 418 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2431 ; 0.540 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 2431 ; 1.680 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 7N93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257611. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : 1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18874 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.739 REMARK 200 RESOLUTION RANGE LOW (A) : 47.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.270 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A60 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M BIS-TRIS PH 5.5, 0.1M LI2SO4, 26 REMARK 280 -28% PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.51000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.51000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 PRO A 83 REMARK 465 GLU A 84 REMARK 465 LYS A 85 REMARK 465 ILE A 86 REMARK 465 SER A 243 REMARK 465 ILE A 244 REMARK 465 HIS A 245 REMARK 465 ASP A 246 REMARK 465 GLY A 247 REMARK 465 THR A 248 REMARK 465 VAL A 249 REMARK 465 THR A 250 REMARK 465 HIS A 251 REMARK 465 THR A 252 REMARK 465 PHE A 253 REMARK 465 ASP A 396 REMARK 465 ASP A 397 REMARK 465 SER A 398 REMARK 465 THR A 399 REMARK 465 LEU A 400 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 465 SER A 403 REMARK 465 ALA A 404 REMARK 465 LEU A 419 REMARK 465 GLU A 420 REMARK 465 SER A 421 REMARK 465 GLY B 82 REMARK 465 PRO B 83 REMARK 465 GLU B 84 REMARK 465 LYS B 241 REMARK 465 GLU B 242 REMARK 465 SER B 243 REMARK 465 ILE B 244 REMARK 465 HIS B 245 REMARK 465 ASP B 246 REMARK 465 GLY B 247 REMARK 465 THR B 248 REMARK 465 VAL B 249 REMARK 465 THR B 250 REMARK 465 HIS B 251 REMARK 465 THR B 252 REMARK 465 PHE B 253 REMARK 465 CYS B 254 REMARK 465 SEP B 394 REMARK 465 PRO B 395 REMARK 465 ASP B 396 REMARK 465 ASP B 397 REMARK 465 SER B 398 REMARK 465 THR B 399 REMARK 465 LEU B 400 REMARK 465 SER B 401 REMARK 465 GLU B 402 REMARK 465 SER B 403 REMARK 465 ALA B 404 REMARK 465 LEU B 419 REMARK 465 GLU B 420 REMARK 465 SER B 421 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS B 308 NH2 ARG B 330 1.83 REMARK 500 O GLY A 113 OG1 THR A 116 1.91 REMARK 500 NZ LYS A 167 O SEP A 394 1.99 REMARK 500 NZ LYS A 141 O VAL A 407 2.07 REMARK 500 O LEU B 306 NH1 ARG B 330 2.09 REMARK 500 NE2 GLN A 406 N PHE A 408 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 131 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 GLU A 296 CB - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 SER A 384 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 VAL B 131 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 ASP B 136 CB - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 ASP B 136 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG B 298 CB - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG B 298 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 ALA B 320 CB - CA - C ANGL. DEV. = -10.0 DEGREES REMARK 500 ASN B 331 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU B 377 CB - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 SER B 384 CB - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 GLN B 406 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 88 -34.70 -38.82 REMARK 500 ASN A 115 -2.08 75.33 REMARK 500 PHE A 154 40.74 -107.52 REMARK 500 PHE A 162 174.43 179.75 REMARK 500 ARG A 217 -55.07 75.91 REMARK 500 GLU A 258 -19.14 -46.11 REMARK 500 ILE A 305 -33.30 -39.04 REMARK 500 LEU A 328 37.11 -86.81 REMARK 500 ALA A 338 20.35 -79.77 REMARK 500 ASP A 342 -126.69 50.93 REMARK 500 PHE A 382 -159.24 -92.32 REMARK 500 SER A 384 -8.36 -48.18 REMARK 500 GLU A 412 150.76 -48.97 REMARK 500 PRO A 416 -109.59 -34.27 REMARK 500 ASN B 115 5.89 83.18 REMARK 500 PHE B 120 -166.21 -118.47 REMARK 500 ILE B 130 -76.17 -83.51 REMARK 500 VAL B 131 -8.81 -55.69 REMARK 500 LEU B 175 78.72 -101.60 REMARK 500 SER B 176 -6.64 -57.14 REMARK 500 ARG B 217 -66.66 78.65 REMARK 500 ARG B 267 44.61 34.50 REMARK 500 ARG B 272 -19.55 -45.40 REMARK 500 LEU B 306 -75.65 -76.17 REMARK 500 ASP B 342 -127.44 45.89 REMARK 500 ARG B 363 30.97 71.43 REMARK 500 SER B 384 3.55 -66.92 REMARK 500 TYR B 413 141.52 -170.69 REMARK 500 SER B 417 -32.14 -35.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 384 LYS B 385 149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7N91 RELATED DB: PDB DBREF 7N93 A 82 421 UNP P23443 KS6B1_HUMAN 82 421 DBREF 7N93 B 82 421 UNP P23443 KS6B1_HUMAN 82 421 SEQADV 7N93 GLU A 412 UNP P23443 THR 412 ENGINEERED MUTATION SEQADV 7N93 GLU B 412 UNP P23443 THR 412 ENGINEERED MUTATION SEQRES 1 A 340 GLY PRO GLU LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU SEQRES 2 A 340 ARG VAL LEU GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN SEQRES 3 A 340 VAL ARG LYS VAL THR GLY ALA ASN THR GLY LYS ILE PHE SEQRES 4 A 340 ALA MET LYS VAL LEU LYS LYS ALA MET ILE VAL ARG ASN SEQRES 5 A 340 ALA LYS ASP THR ALA HIS THR LYS ALA GLU ARG ASN ILE SEQRES 6 A 340 LEU GLU GLU VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE SEQRES 7 A 340 TYR ALA PHE GLN THR GLY GLY LYS LEU TYR LEU ILE LEU SEQRES 8 A 340 GLU TYR LEU SER GLY GLY GLU LEU PHE MET GLN LEU GLU SEQRES 9 A 340 ARG GLU GLY ILE PHE MET GLU ASP THR ALA CYS PHE TYR SEQRES 10 A 340 LEU ALA GLU ILE SER MET ALA LEU GLY HIS LEU HIS GLN SEQRES 11 A 340 LYS GLY ILE ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE SEQRES 12 A 340 MET LEU ASN HIS GLN GLY HIS VAL LYS LEU THR ASP PHE SEQRES 13 A 340 GLY LEU CYS LYS GLU SER ILE HIS ASP GLY THR VAL THR SEQRES 14 A 340 HIS THR PHE CYS GLY THR ILE GLU TYR MET ALA PRO GLU SEQRES 15 A 340 ILE LEU MET ARG SER GLY HIS ASN ARG ALA VAL ASP TRP SEQRES 16 A 340 TRP SER LEU GLY ALA LEU MET TYR ASP MET LEU THR GLY SEQRES 17 A 340 ALA PRO PRO PHE THR GLY GLU ASN ARG LYS LYS THR ILE SEQRES 18 A 340 ASP LYS ILE LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR SEQRES 19 A 340 LEU THR GLN GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU SEQRES 20 A 340 LYS ARG ASN ALA ALA SER ARG LEU GLY ALA GLY PRO GLY SEQRES 21 A 340 ASP ALA GLY GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS SEQRES 22 A 340 ILE ASN TRP GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO SEQRES 23 A 340 PRO PHE LYS PRO LEU LEU GLN SER GLU GLU ASP VAL SER SEQRES 24 A 340 GLN PHE ASP SER LYS PHE THR ARG GLN TPO PRO VAL ASP SEQRES 25 A 340 SEP PRO ASP ASP SER THR LEU SER GLU SER ALA ASN GLN SEQRES 26 A 340 VAL PHE LEU GLY PHE GLU TYR VAL ALA PRO SER VAL LEU SEQRES 27 A 340 GLU SER SEQRES 1 B 340 GLY PRO GLU LYS ILE ARG PRO GLU CYS PHE GLU LEU LEU SEQRES 2 B 340 ARG VAL LEU GLY LYS GLY GLY TYR GLY LYS VAL PHE GLN SEQRES 3 B 340 VAL ARG LYS VAL THR GLY ALA ASN THR GLY LYS ILE PHE SEQRES 4 B 340 ALA MET LYS VAL LEU LYS LYS ALA MET ILE VAL ARG ASN SEQRES 5 B 340 ALA LYS ASP THR ALA HIS THR LYS ALA GLU ARG ASN ILE SEQRES 6 B 340 LEU GLU GLU VAL LYS HIS PRO PHE ILE VAL ASP LEU ILE SEQRES 7 B 340 TYR ALA PHE GLN THR GLY GLY LYS LEU TYR LEU ILE LEU SEQRES 8 B 340 GLU TYR LEU SER GLY GLY GLU LEU PHE MET GLN LEU GLU SEQRES 9 B 340 ARG GLU GLY ILE PHE MET GLU ASP THR ALA CYS PHE TYR SEQRES 10 B 340 LEU ALA GLU ILE SER MET ALA LEU GLY HIS LEU HIS GLN SEQRES 11 B 340 LYS GLY ILE ILE TYR ARG ASP LEU LYS PRO GLU ASN ILE SEQRES 12 B 340 MET LEU ASN HIS GLN GLY HIS VAL LYS LEU THR ASP PHE SEQRES 13 B 340 GLY LEU CYS LYS GLU SER ILE HIS ASP GLY THR VAL THR SEQRES 14 B 340 HIS THR PHE CYS GLY THR ILE GLU TYR MET ALA PRO GLU SEQRES 15 B 340 ILE LEU MET ARG SER GLY HIS ASN ARG ALA VAL ASP TRP SEQRES 16 B 340 TRP SER LEU GLY ALA LEU MET TYR ASP MET LEU THR GLY SEQRES 17 B 340 ALA PRO PRO PHE THR GLY GLU ASN ARG LYS LYS THR ILE SEQRES 18 B 340 ASP LYS ILE LEU LYS CYS LYS LEU ASN LEU PRO PRO TYR SEQRES 19 B 340 LEU THR GLN GLU ALA ARG ASP LEU LEU LYS LYS LEU LEU SEQRES 20 B 340 LYS ARG ASN ALA ALA SER ARG LEU GLY ALA GLY PRO GLY SEQRES 21 B 340 ASP ALA GLY GLU VAL GLN ALA HIS PRO PHE PHE ARG HIS SEQRES 22 B 340 ILE ASN TRP GLU GLU LEU LEU ALA ARG LYS VAL GLU PRO SEQRES 23 B 340 PRO PHE LYS PRO LEU LEU GLN SER GLU GLU ASP VAL SER SEQRES 24 B 340 GLN PHE ASP SER LYS PHE THR ARG GLN TPO PRO VAL ASP SEQRES 25 B 340 SEP PRO ASP ASP SER THR LEU SER GLU SER ALA ASN GLN SEQRES 26 B 340 VAL PHE LEU GLY PHE GLU TYR VAL ALA PRO SER VAL LEU SEQRES 27 B 340 GLU SER MODRES 7N93 TPO A 390 THR MODIFIED RESIDUE MODRES 7N93 SEP A 394 SER MODIFIED RESIDUE MODRES 7N93 TPO B 390 THR MODIFIED RESIDUE HET TPO A 390 11 HET SEP A 394 10 HET TPO B 390 11 HET 1SK A 501 31 HET 1SK B 501 31 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM 1SK 4-({(1S)-2-(AZETIDIN-1-YL)-1-[4-CHLORO-3- HETNAM 2 1SK (TRIFLUOROMETHYL)PHENYL]ETHYL}AMINO)QUINAZOLINE-8- HETNAM 3 1SK CARBOXAMIDE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 1SK 2(C21 H19 CL F3 N5 O) FORMUL 5 HOH *4(H2 O) HELIX 1 AA1 ARG A 87 GLU A 89 5 3 HELIX 2 AA2 LYS A 127 ARG A 132 1 6 HELIX 3 AA3 ASN A 133 VAL A 150 1 18 HELIX 4 AA4 LEU A 180 GLY A 188 1 9 HELIX 5 AA5 MET A 191 LYS A 212 1 22 HELIX 6 AA6 LYS A 220 GLU A 222 5 3 HELIX 7 AA7 ALA A 261 MET A 266 1 6 HELIX 8 AA8 ALA A 273 GLY A 289 1 17 HELIX 9 AA9 ASN A 297 CYS A 308 1 12 HELIX 10 AB1 THR A 317 LEU A 328 1 12 HELIX 11 AB2 ASN A 331 ARG A 335 5 5 HELIX 12 AB3 ASP A 342 ALA A 348 1 7 HELIX 13 AB4 HIS A 349 ARG A 353 5 5 HELIX 14 AB5 ASN A 356 ALA A 362 1 7 HELIX 15 AB6 ASP A 383 ARG A 388 1 6 HELIX 16 AB7 ARG B 87 GLU B 89 5 3 HELIX 17 AB8 LYS B 127 ARG B 132 1 6 HELIX 18 AB9 ASN B 133 VAL B 150 1 18 HELIX 19 AC1 GLU B 179 ARG B 186 1 8 HELIX 20 AC2 MET B 191 LYS B 212 1 22 HELIX 21 AC3 ALA B 261 MET B 266 1 6 HELIX 22 AC4 ASN B 271 ALA B 273 5 3 HELIX 23 AC5 VAL B 274 GLY B 289 1 16 HELIX 24 AC6 ARG B 298 LYS B 307 1 10 HELIX 25 AC7 THR B 317 LEU B 328 1 12 HELIX 26 AC8 ASP B 342 ALA B 348 1 7 HELIX 27 AC9 HIS B 349 ARG B 353 5 5 HELIX 28 AD1 ASN B 356 ARG B 363 1 8 HELIX 29 AD2 ASP B 383 ARG B 388 1 6 SHEET 1 AA1 6 PHE A 91 GLY A 100 0 SHEET 2 AA1 6 GLY A 103 LYS A 110 -1 O GLN A 107 N ARG A 95 SHEET 3 AA1 6 ILE A 119 LYS A 126 -1 O MET A 122 N PHE A 106 SHEET 4 AA1 6 LYS A 167 LEU A 172 -1 O LEU A 170 N LYS A 123 SHEET 5 AA1 6 LEU A 158 THR A 164 -1 N TYR A 160 O ILE A 171 SHEET 6 AA1 6 TYR A 413 VAL A 414 -1 O TYR A 413 N ALA A 161 SHEET 1 AA2 3 GLY A 178 GLU A 179 0 SHEET 2 AA2 3 ILE A 224 LEU A 226 -1 O LEU A 226 N GLY A 178 SHEET 3 AA2 3 VAL A 232 LEU A 234 -1 O LYS A 233 N MET A 225 SHEET 1 AA3 6 PHE B 91 LYS B 99 0 SHEET 2 AA3 6 GLY B 103 LYS B 110 -1 O VAL B 105 N LEU B 97 SHEET 3 AA3 6 ILE B 119 LYS B 126 -1 O VAL B 124 N LYS B 104 SHEET 4 AA3 6 LYS B 167 GLU B 173 -1 O LEU B 172 N ALA B 121 SHEET 5 AA3 6 LEU B 158 GLN B 163 -1 N PHE B 162 O TYR B 169 SHEET 6 AA3 6 TYR B 413 VAL B 414 -1 O TYR B 413 N ALA B 161 SHEET 1 AA4 2 ILE B 224 LEU B 226 0 SHEET 2 AA4 2 VAL B 232 LEU B 234 -1 O LYS B 233 N MET B 225 SSBOND 1 CYS A 240 CYS A 254 1555 1555 2.05 LINK C GLN A 389 N TPO A 390 1555 1555 1.33 LINK C TPO A 390 N PRO A 391 1555 1555 1.34 LINK C ASP A 393 N SEP A 394 1555 1555 1.33 LINK C SEP A 394 N PRO A 395 1555 1555 1.35 LINK C GLN B 389 N TPO B 390 1555 1555 1.33 LINK C TPO B 390 N PRO B 391 1555 1555 1.33 CISPEP 1 THR A 294 GLY A 295 0 2.62 CRYST1 61.020 75.450 151.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016388 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013254 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006596 0.00000