HEADER CELL CYCLE 17-JUN-21 7N9G
TITLE CRYSTAL STRUCTURE OF THE ABL 1B KINASE DOMAIN IN COMPLEX WITH
TITLE 2 DASATINIB AND IMATINIB
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1;
COMPND 3 CHAIN: A, B, C;
COMPND 4 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON
COMPND 5 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150;
COMPND 6 EC: 2.7.10.2;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ABL1, ABL, JTK7;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ABL KINASE, KINASE ALLOSTERIC REGULATION, DRUG RESISTANCE, CELL CYCLE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.J.MILLER,T.XIE
REVDAT 2 18-OCT-23 7N9G 1 REMARK
REVDAT 1 27-APR-22 7N9G 0
JRNL AUTH T.XIE,T.SALEH,P.ROSSI,D.MILLER,C.G.KALODIMOS
JRNL TITL IMATINIB CAN ACT AS AN ALLOSTERIC ACTIVATOR OF ABL KINASE.
JRNL REF J.MOL.BIOL. V. 434 67349 2022
JRNL REFN ESSN 1089-8638
JRNL PMID 34774565
JRNL DOI 10.1016/J.JMB.2021.167349
REMARK 2
REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0257
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.70
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 55936
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : NULL
REMARK 3 R VALUE (WORKING + TEST SET) : NULL
REMARK 3 R VALUE (WORKING SET) : 0.217
REMARK 3 FREE R VALUE : 0.251
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.834
REMARK 3 FREE R VALUE TEST SET COUNT : 2704
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3811
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.21
REMARK 3 BIN R VALUE (WORKING SET) : 0.3060
REMARK 3 BIN FREE R VALUE SET COUNT : 194
REMARK 3 BIN FREE R VALUE : 0.3100
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5886
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 215
REMARK 3 SOLVENT ATOMS : 206
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.07
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.58500
REMARK 3 B22 (A**2) : -1.88700
REMARK 3 B33 (A**2) : -1.69800
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.231
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.175
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.206
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6264 ; 0.005 ; 0.013
REMARK 3 BOND LENGTHS OTHERS (A): 5577 ; 0.001 ; 0.017
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8506 ; 1.289 ; 1.644
REMARK 3 BOND ANGLES OTHERS (DEGREES): 12872 ; 1.244 ; 1.570
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 736 ; 6.712 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;34.255 ;22.910
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 978 ;14.410 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;11.506 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.056 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6973 ; 0.005 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1361 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1178 ; 0.196 ; 0.200
REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.195 ; 0.200
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3066 ; 0.170 ; 0.200
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 196 ; 0.139 ; 0.200
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2980 ; 3.170 ; 5.648
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2978 ; 3.170 ; 5.647
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3702 ; 4.741 ; 8.446
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3703 ; 4.741 ; 8.447
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3282 ; 3.845 ; 5.834
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3279 ; 3.843 ; 5.836
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4803 ; 5.909 ; 8.627
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4798 ; 5.908 ; 8.631
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK BULK SOLVENT
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR
REMARK 3 RIDING POSITIONS
REMARK 4
REMARK 4 7N9G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-21.
REMARK 100 THE DEPOSITION ID IS D_1000257621.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 31-MAR-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 22-BM
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55951
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200
REMARK 200 RESOLUTION RANGE LOW (A) : 46.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 8.600
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.08300
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6
REMARK 200 DATA REDUNDANCY IN SHELL : 8.70
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 1.18400
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 2GQG
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.36
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM DIHYDROGEN PHOSPHATE, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -X,Y,-Z
REMARK 290 4555 X,-Y,-Z
REMARK 290 5555 X+1/2,Y+1/2,Z+1/2
REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.96650
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 83.43950
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.40850
REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.96650
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.43950
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.40850
REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.96650
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 83.43950
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 93.40850
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.96650
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 83.43950
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.40850
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2, 3
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 3
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 248
REMARK 465 PRO A 249
REMARK 465 ASN A 250
REMARK 465 TYR A 251
REMARK 465 GLU A 294
REMARK 465 ASP A 295
REMARK 465 THR A 296
REMARK 465 MET A 407
REMARK 465 THR A 408
REMARK 465 GLY A 409
REMARK 465 ASP A 410
REMARK 465 THR A 411
REMARK 465 TYR A 412
REMARK 465 THR A 413
REMARK 465 ALA A 414
REMARK 465 HIS A 415
REMARK 465 ALA A 416
REMARK 465 GLY A 417
REMARK 465 ALA A 418
REMARK 465 LYS A 419
REMARK 465 GLU A 518
REMARK 465 SER B 248
REMARK 465 PRO B 249
REMARK 465 ASN B 250
REMARK 465 TYR B 251
REMARK 465 GLY B 270
REMARK 465 GLN B 271
REMARK 465 GLU B 518
REMARK 465 SER C 248
REMARK 465 PRO C 249
REMARK 465 ASN C 250
REMARK 465 TYR C 251
REMARK 465 ASP C 252
REMARK 465 GLY C 268
REMARK 465 GLY C 269
REMARK 465 GLY C 270
REMARK 465 GLN C 271
REMARK 465 TYR C 272
REMARK 465 GLY C 273
REMARK 465 GLU C 274
REMARK 465 LYS C 281
REMARK 465 LYS C 282
REMARK 465 TYR C 283
REMARK 465 SER C 284
REMARK 465 LEU C 285
REMARK 465 LEU C 292
REMARK 465 LYS C 293
REMARK 465 GLU C 294
REMARK 465 ASP C 295
REMARK 465 THR C 296
REMARK 465 MET C 297
REMARK 465 GLY C 322
REMARK 465 VAL C 323
REMARK 465 CYS C 324
REMARK 465 THR C 325
REMARK 465 ARG C 326
REMARK 465 GLU C 327
REMARK 465 PRO C 328
REMARK 465 PRO C 329
REMARK 465 PHE C 330
REMARK 465 TYR C 331
REMARK 465 HIS C 415
REMARK 465 ALA C 416
REMARK 465 GLY C 417
REMARK 465 ALA C 418
REMARK 465 LYS C 419
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 293 CG CD CE NZ
REMARK 470 MET A 297 CG SD CE
REMARK 470 GLU A 298 CG CD OE1 OE2
REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 327 CG CD OE1 OE2
REMARK 470 GLU A 392 CG CD OE1 OE2
REMARK 470 LYS A 434 CG CD CE NZ
REMARK 470 LYS A 486 CG CD CE NZ
REMARK 470 GLN A 517 CG CD OE1 NE2
REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2
REMARK 470 TYR B 272 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LYS B 293 CG CD CE NZ
REMARK 470 GLU B 294 CG CD OE1 OE2
REMARK 470 ARG B 326 CG CD NE CZ NH1 NH2
REMARK 470 GLU B 327 CG CD OE1 OE2
REMARK 470 LYS B 375 CG CD CE NZ
REMARK 470 LYS B 419 CG CD CE NZ
REMARK 470 LYS B 434 CG CD CE NZ
REMARK 470 GLN B 517 CG CD OE1 NE2
REMARK 470 LYS C 253 CG CD CE NZ
REMARK 470 TRP C 254 CG CD1 CD2 NE1 CE2 CE3 CZ2
REMARK 470 TRP C 254 CZ3 CH2
REMARK 470 GLU C 255 CG CD OE1 OE2
REMARK 470 MET C 256 CG SD CE
REMARK 470 GLU C 257 CG CD OE1 OE2
REMARK 470 ARG C 258 CG CD NE CZ NH1 NH2
REMARK 470 THR C 259 OG1 CG2
REMARK 470 ASP C 260 CG OD1 OD2
REMARK 470 ILE C 261 CG1 CG2 CD1
REMARK 470 THR C 262 OG1 CG2
REMARK 470 MET C 263 CG SD CE
REMARK 470 LYS C 264 CG CD CE NZ
REMARK 470 HIS C 265 CG ND1 CD2 CE1 NE2
REMARK 470 LYS C 266 CG CD CE NZ
REMARK 470 LEU C 267 CG CD1 CD2
REMARK 470 VAL C 275 CG1 CG2
REMARK 470 TYR C 276 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 VAL C 279 CG1 CG2
REMARK 470 TRP C 280 CG CD1 CD2 NE1 CE2 CE3 CZ2
REMARK 470 TRP C 280 CZ3 CH2
REMARK 470 THR C 286 OG1 CG2
REMARK 470 VAL C 289 CG1 CG2
REMARK 470 LYS C 290 CG CD CE NZ
REMARK 470 THR C 291 OG1 CG2
REMARK 470 GLU C 298 CG CD OE1 OE2
REMARK 470 VAL C 299 CG1 CG2
REMARK 470 GLU C 300 CG CD OE1 OE2
REMARK 470 GLU C 301 CG CD OE1 OE2
REMARK 470 LEU C 303 CG CD1 CD2
REMARK 470 LYS C 304 CG CD CE NZ
REMARK 470 GLU C 305 CG CD OE1 OE2
REMARK 470 LYS C 310 CG CD CE NZ
REMARK 470 LYS C 313 CG CD CE NZ
REMARK 470 ILE C 332 CG1 CG2 CD1
REMARK 470 ILE C 333 CG1 CG2 CD1
REMARK 470 LYS C 376 CG CD CE NZ
REMARK 470 LEU C 403 CG CD1 CD2
REMARK 470 ARG C 405 CG CD NE CZ NH1 NH2
REMARK 470 LEU C 406 CG CD1 CD2
REMARK 470 MET C 407 CG SD CE
REMARK 470 PHE C 435 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 GLU C 518 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 264 -157.00 -121.16
REMARK 500 ASN A 355 -168.82 -112.97
REMARK 500 ASP A 382 56.49 -153.15
REMARK 500 LYS A 473 34.25 -93.11
REMARK 500 LYS B 264 -157.25 -124.66
REMARK 500 GLU B 294 -134.60 35.80
REMARK 500 ASN B 355 -165.06 -110.53
REMARK 500 ASP B 382 44.83 -149.32
REMARK 500 ALA B 399 -168.58 -122.97
REMARK 500 ASP B 400 84.79 58.54
REMARK 500 TRP C 254 -56.89 -122.04
REMARK 500 LYS C 264 -164.84 -116.53
REMARK 500 PRO C 421 99.76 -65.53
REMARK 500
REMARK 500 REMARK: NULL
DBREF 7N9G A 248 518 UNP P00519 ABL1_HUMAN 229 499
DBREF 7N9G B 248 518 UNP P00519 ABL1_HUMAN 229 499
DBREF 7N9G C 248 518 UNP P00519 ABL1_HUMAN 229 499
SEQRES 1 A 271 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP
SEQRES 2 A 271 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY
SEQRES 3 A 271 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR
SEQRES 4 A 271 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL
SEQRES 5 A 271 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE
SEQRES 6 A 271 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR
SEQRES 7 A 271 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR
SEQRES 8 A 271 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG
SEQRES 9 A 271 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR
SEQRES 10 A 271 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN
SEQRES 11 A 271 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL
SEQRES 12 A 271 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU
SEQRES 13 A 271 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA
SEQRES 14 A 271 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER
SEQRES 15 A 271 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP
SEQRES 16 A 271 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY
SEQRES 17 A 271 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR
SEQRES 18 A 271 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU
SEQRES 19 A 271 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS
SEQRES 20 A 271 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU
SEQRES 21 A 271 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU
SEQRES 1 B 271 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP
SEQRES 2 B 271 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY
SEQRES 3 B 271 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR
SEQRES 4 B 271 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL
SEQRES 5 B 271 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE
SEQRES 6 B 271 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR
SEQRES 7 B 271 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR
SEQRES 8 B 271 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG
SEQRES 9 B 271 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR
SEQRES 10 B 271 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN
SEQRES 11 B 271 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL
SEQRES 12 B 271 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU
SEQRES 13 B 271 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA
SEQRES 14 B 271 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER
SEQRES 15 B 271 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP
SEQRES 16 B 271 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY
SEQRES 17 B 271 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR
SEQRES 18 B 271 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU
SEQRES 19 B 271 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS
SEQRES 20 B 271 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU
SEQRES 21 B 271 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU
SEQRES 1 C 271 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP
SEQRES 2 C 271 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY
SEQRES 3 C 271 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR
SEQRES 4 C 271 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL
SEQRES 5 C 271 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE
SEQRES 6 C 271 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR
SEQRES 7 C 271 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR
SEQRES 8 C 271 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG
SEQRES 9 C 271 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR
SEQRES 10 C 271 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN
SEQRES 11 C 271 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL
SEQRES 12 C 271 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU
SEQRES 13 C 271 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA
SEQRES 14 C 271 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER
SEQRES 15 C 271 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP
SEQRES 16 C 271 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY
SEQRES 17 C 271 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR
SEQRES 18 C 271 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU
SEQRES 19 C 271 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS
SEQRES 20 C 271 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU
SEQRES 21 C 271 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU
HET STI A 601 37
HET 1N1 A 602 33
HET PO4 A 603 5
HET STI B 601 37
HET 1N1 B 602 33
HET STI C 601 37
HET 1N1 C 602 33
HETNAM STI 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-
HETNAM 2 STI PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE
HETNAM 1N1 N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)
HETNAM 2 1N1 PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-
HETNAM 3 1N1 THIAZOLE-5-CARBOXAMIDE
HETNAM PO4 PHOSPHATE ION
HETSYN STI STI-571; IMATINIB
HETSYN 1N1 DASATINIB
FORMUL 4 STI 3(C29 H31 N7 O)
FORMUL 5 1N1 3(C22 H26 CL N7 O2 S)
FORMUL 6 PO4 O4 P 3-
FORMUL 11 HOH *206(H2 O)
HELIX 1 AA1 GLU A 257 THR A 259 5 3
HELIX 2 AA2 GLY A 268 GLN A 271 5 4
HELIX 3 AA3 LYS A 282 SER A 284 5 3
HELIX 4 AA4 GLU A 298 GLU A 311 1 14
HELIX 5 AA5 LEU A 342 CYS A 349 1 8
HELIX 6 AA6 ASN A 355 LYS A 376 1 22
HELIX 7 AA7 ALA A 384 ARG A 386 5 3
HELIX 8 AA8 GLU A 392 HIS A 394 5 3
HELIX 9 AA9 PRO A 421 THR A 425 5 5
HELIX 10 AB1 ALA A 426 ASN A 433 1 8
HELIX 11 AB2 SER A 436 THR A 453 1 18
HELIX 12 AB3 ASP A 463 SER A 465 5 3
HELIX 13 AB4 GLN A 466 LYS A 473 1 8
HELIX 14 AB5 PRO A 484 TRP A 495 1 12
HELIX 15 AB6 ASN A 498 ARG A 502 5 5
HELIX 16 AB7 SER A 504 PHE A 516 1 13
HELIX 17 AB8 GLU B 257 THR B 259 5 3
HELIX 18 AB9 LYS B 282 SER B 284 5 3
HELIX 19 AC1 GLU B 298 LYS B 310 1 13
HELIX 20 AC2 LEU B 342 CYS B 349 1 8
HELIX 21 AC3 ASN B 355 LYS B 376 1 22
HELIX 22 AC4 ALA B 384 ARG B 386 5 3
HELIX 23 AC5 GLU B 392 HIS B 394 5 3
HELIX 24 AC6 PRO B 421 THR B 425 5 5
HELIX 25 AC7 ALA B 426 ASN B 433 1 8
HELIX 26 AC8 SER B 436 THR B 453 1 18
HELIX 27 AC9 ASP B 463 SER B 465 5 3
HELIX 28 AD1 GLN B 466 LYS B 473 1 8
HELIX 29 AD2 PRO B 484 TRP B 495 1 12
HELIX 30 AD3 ASN B 498 ARG B 502 5 5
HELIX 31 AD4 SER B 504 PHE B 516 1 13
HELIX 32 AD5 VAL C 299 GLU C 311 1 13
HELIX 33 AD6 LEU C 342 CYS C 349 1 8
HELIX 34 AD7 ASN C 355 LYS C 376 1 22
HELIX 35 AD8 ALA C 384 ARG C 386 5 3
HELIX 36 AD9 GLU C 392 HIS C 394 5 3
HELIX 37 AE1 ALA C 426 ASN C 433 1 8
HELIX 38 AE2 SER C 436 THR C 453 1 18
HELIX 39 AE3 ASP C 463 SER C 465 5 3
HELIX 40 AE4 GLN C 466 LYS C 473 1 8
HELIX 41 AE5 PRO C 484 TRP C 495 1 12
HELIX 42 AE6 ASN C 498 ARG C 502 5 5
HELIX 43 AE7 SER C 504 GLU C 518 1 15
SHEET 1 AA1 5 ILE A 261 LYS A 266 0
SHEET 2 AA1 5 VAL A 275 TRP A 280 -1 O GLU A 277 N HIS A 265
SHEET 3 AA1 5 LEU A 285 LEU A 292 -1 O VAL A 289 N TYR A 276
SHEET 4 AA1 5 PHE A 330 GLU A 335 -1 O ILE A 332 N LYS A 290
SHEET 5 AA1 5 LEU A 320 CYS A 324 -1 N GLY A 322 O ILE A 333
SHEET 1 AA2 3 GLY A 340 ASN A 341 0
SHEET 2 AA2 3 CYS A 388 VAL A 390 -1 O VAL A 390 N GLY A 340
SHEET 3 AA2 3 VAL A 396 VAL A 398 -1 O LYS A 397 N LEU A 389
SHEET 1 AA3 2 PHE A 378 HIS A 380 0
SHEET 2 AA3 2 LEU A 403 ARG A 405 -1 O SER A 404 N ILE A 379
SHEET 1 AA4 5 ILE B 261 GLY B 268 0
SHEET 2 AA4 5 GLU B 274 TRP B 280 -1 O GLU B 277 N HIS B 265
SHEET 3 AA4 5 LEU B 285 LEU B 292 -1 O VAL B 287 N GLY B 278
SHEET 4 AA4 5 PHE B 330 GLU B 335 -1 O ILE B 332 N LYS B 290
SHEET 5 AA4 5 LEU B 320 CYS B 324 -1 N GLY B 322 O ILE B 333
SHEET 1 AA5 3 GLY B 340 ASN B 341 0
SHEET 2 AA5 3 CYS B 388 VAL B 390 -1 O VAL B 390 N GLY B 340
SHEET 3 AA5 3 VAL B 396 VAL B 398 -1 O LYS B 397 N LEU B 389
SHEET 1 AA6 2 PHE B 378 ILE B 379 0
SHEET 2 AA6 2 ARG B 405 LEU B 406 -1 O ARG B 405 N ILE B 379
SHEET 1 AA7 2 TYR B 412 THR B 413 0
SHEET 2 AA7 2 LYS B 434 PHE B 435 -1 O PHE B 435 N TYR B 412
SHEET 1 AA8 3 TYR C 276 GLY C 278 0
SHEET 2 AA8 3 VAL C 287 VAL C 289 -1 O VAL C 289 N TYR C 276
SHEET 3 AA8 3 ILE C 333 THR C 334 -1 O THR C 334 N ALA C 288
SHEET 1 AA9 3 GLY C 340 ASN C 341 0
SHEET 2 AA9 3 CYS C 388 VAL C 390 -1 O VAL C 390 N GLY C 340
SHEET 3 AA9 3 VAL C 396 VAL C 398 -1 O LYS C 397 N LEU C 389
SHEET 1 AB1 2 PHE C 378 HIS C 380 0
SHEET 2 AB1 2 LEU C 403 ARG C 405 -1 O SER C 404 N ILE C 379
SHEET 1 AB2 2 TYR C 412 THR C 413 0
SHEET 2 AB2 2 LYS C 434 PHE C 435 -1 O PHE C 435 N TYR C 412
CISPEP 1 PRO A 328 PRO A 329 0 -5.00
CISPEP 2 PRO B 328 PRO B 329 0 -12.26
CRYST1 69.933 166.879 186.817 90.00 90.00 90.00 I 2 2 2 24
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014299 0.000000 0.000000 0.00000
SCALE2 0.000000 0.005992 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005353 0.00000