HEADER RIBOSOME 21-JUN-21 7NAF TITLE STATE E2 NUCLEOLAR 60S RIBOSOMAL BIOGENESIS INTERMEDIATE - SPB1-MTD TITLE 2 LOCAL MODEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 25S RRNA; COMPND 3 CHAIN: 1; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: RIBOSOMAL RNA-PROCESSING PROTEIN 17; COMPND 6 CHAIN: 5; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: NUCLEOLAR COMPLEX PROTEIN 2; COMPND 9 CHAIN: 8; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: 60S RIBOSOMAL PROTEIN L23-A; COMPND 12 CHAIN: V; COMPND 13 SYNONYM: L17A,LARGE RIBOSOMAL SUBUNIT PROTEIN UL14-A,YL32; COMPND 14 MOL_ID: 5; COMPND 15 MOLECULE: RIBOSOME BIOGENESIS PROTEIN RLP24; COMPND 16 CHAIN: u; COMPND 17 SYNONYM: RIBOSOMAL PROTEIN L24-LIKE; COMPND 18 MOL_ID: 6; COMPND 19 MOLECULE: 27S PRE-RRNA (GUANOSINE(2922)-2'-O)-METHYLTRANSFERASE; COMPND 20 CHAIN: w; COMPND 21 SYNONYM: 2'-O-RIBOSE RNA METHYLTRANSFERASE SPB1,ADOMET-DEPENDENT RRNA COMPND 22 METHYLTRANSFERASE SPB1,S-ADENOSYL-L-METHIONINE-DEPENDENT COMPND 23 METHYLTRANSFERASE,SUPPRESSOR OF PAB1 PROTEIN 1; COMPND 24 EC: 2.1.1.167; COMPND 25 MOL_ID: 7; COMPND 26 MOLECULE: 60S RIBOSOME BIOGENESIS FACTOR NOG1; COMPND 27 CHAIN: b; COMPND 28 EC: 2.1.1.167; COMPND 29 MOL_ID: 8; COMPND 30 MOLECULE: 60S RIBOSOMAL PROTEIN L31-A; COMPND 31 CHAIN: d; COMPND 32 SYNONYM: L34,LARGE RIBOSOMAL SUBUNIT PROTEIN EL31-A,YL28; COMPND 33 MOL_ID: 9; COMPND 34 MOLECULE: 60S RIBOSOMAL PROTEIN L22-A; COMPND 35 CHAIN: U; COMPND 36 MOL_ID: 10; COMPND 37 MOLECULE: 60S RIBOSOME RIBOSOMAL PROTEIN L19A; COMPND 38 CHAIN: R; COMPND 39 MOL_ID: 11; COMPND 40 MOLECULE: 60S RIBOSOMAL PROTEIN L30; COMPND 41 CHAIN: c; COMPND 42 MOL_ID: 12; COMPND 43 MOLECULE: 60S RIBOSOMAL PROTEIN L3; COMPND 44 CHAIN: B; COMPND 45 SYNONYM: LARGE RIBOSOMAL SUBUNIT PROTEIN UL3,MAINTENANCE OF KILLER COMPND 46 PROTEIN 8,RP1,TRICHODERMIN RESISTANCE PROTEIN,YL1; COMPND 47 MOL_ID: 13; COMPND 48 MOLECULE: UPF0642 PROTEIN YBL028C; COMPND 49 CHAIN: z; COMPND 50 MOL_ID: 14; COMPND 51 MOLECULE: NUCLEAR GTP-BINDING PROTEIN NUG1; COMPND 52 CHAIN: s; COMPND 53 SYNONYM: NUCLEAR GTPASE 1; COMPND 54 MOL_ID: 15; COMPND 55 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 6; COMPND 56 CHAIN: y; COMPND 57 SYNONYM: EIF-6; COMPND 58 MOL_ID: 16; COMPND 59 MOLECULE: 25S RRNA (CYTOSINE(2870)-C(5))-METHYLTRANSFERASE; COMPND 60 CHAIN: q; COMPND 61 SYNONYM: NUCLEOLAR PROTEIN 2; COMPND 62 EC: 2.1.1.310 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 3 ORGANISM_TAXID: 1247190; SOURCE 4 STRAIN: BY4741; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 7 ORGANISM_TAXID: 1247190; SOURCE 8 STRAIN: BY4741; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 11 ORGANISM_TAXID: 1247190; SOURCE 12 STRAIN: BY4741; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 15 ORGANISM_TAXID: 1247190; SOURCE 16 STRAIN: BY4741; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 19 ORGANISM_TAXID: 1247190; SOURCE 20 STRAIN: BY4741; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 23 ORGANISM_TAXID: 1247190; SOURCE 24 STRAIN: BY4741; SOURCE 25 MOL_ID: 7; SOURCE 26 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 27 ORGANISM_TAXID: 1247190; SOURCE 28 STRAIN: BY4741; SOURCE 29 MOL_ID: 8; SOURCE 30 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 31 ORGANISM_TAXID: 1247190; SOURCE 32 STRAIN: BY4741; SOURCE 33 MOL_ID: 9; SOURCE 34 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 35 ORGANISM_TAXID: 1247190; SOURCE 36 STRAIN: BY4741; SOURCE 37 MOL_ID: 10; SOURCE 38 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 39 ORGANISM_TAXID: 1247190; SOURCE 40 STRAIN: BY4741; SOURCE 41 MOL_ID: 11; SOURCE 42 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 43 ORGANISM_TAXID: 1247190; SOURCE 44 STRAIN: BY4741; SOURCE 45 MOL_ID: 12; SOURCE 46 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 47 ORGANISM_TAXID: 1247190; SOURCE 48 STRAIN: BY4741; SOURCE 49 MOL_ID: 13; SOURCE 50 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 51 ORGANISM_TAXID: 1247190; SOURCE 52 STRAIN: BY4741; SOURCE 53 MOL_ID: 14; SOURCE 54 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 55 ORGANISM_TAXID: 1247190; SOURCE 56 STRAIN: BY4741; SOURCE 57 MOL_ID: 15; SOURCE 58 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 59 ORGANISM_TAXID: 1247190; SOURCE 60 STRAIN: BY4741; SOURCE 61 MOL_ID: 16; SOURCE 62 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE BY4741; SOURCE 63 ORGANISM_TAXID: 1247190; SOURCE 64 STRAIN: BY4741 KEYWDS RIBOSOME BIOGENESIS, DEAD-BOX ATPASES, METHYLTRANSFERASE, NUCLEOLUS, KEYWDS 2 RIBOSOME EXPDTA ELECTRON MICROSCOPY AUTHOR V.E.CRUZ,K.SEKULSKI,N.PEDDADA,J.P.ERZBERGER REVDAT 5 05-JUN-24 7NAF 1 REMARK REVDAT 4 28-DEC-22 7NAF 1 JRNL REVDAT 3 21-DEC-22 7NAF 1 JRNL REVDAT 2 14-DEC-22 7NAF 1 JRNL REVDAT 1 09-NOV-22 7NAF 0 JRNL AUTH V.E.CRUZ,K.SEKULSKI,N.PEDDADA,C.SAILER,S.BALASUBRAMANIAN, JRNL AUTH 2 C.S.WEIRICH,F.STENGEL,J.P.ERZBERGER JRNL TITL SEQUENCE-SPECIFIC REMODELING OF A TOPOLOGICALLY COMPLEX RNP JRNL TITL 2 SUBSTRATE BY SPB4. JRNL REF NAT.STRUCT.MOL.BIOL. V. 29 1228 2022 JRNL REFN ESSN 1545-9985 JRNL PMID 36482249 JRNL DOI 10.1038/S41594-022-00874-9 REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, GCTF, RELION, RELION, RELION, REMARK 3 RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.130 REMARK 3 NUMBER OF PARTICLES : 198000 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7NAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257683. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : NUCLEOLAR 60S INTERMEDIATE REMARK 245 PURIFIED WITH TAGS ON YTM1 AND REMARK 245 SPB4. REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.45 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4523 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 900.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2200.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 120.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 5, 8, V, u, w, b, d, U, R, REMARK 350 AND CHAINS: c, B, z, s, y, q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY w 330 REMARK 465 ILE w 331 REMARK 465 GLU w 332 REMARK 465 VAL w 333 REMARK 465 LYS w 334 REMARK 465 ASP w 335 REMARK 465 ASP w 336 REMARK 465 ALA w 337 REMARK 465 LYS w 338 REMARK 465 THR w 339 REMARK 465 GLU w 340 REMARK 465 ILE w 341 REMARK 465 GLU w 342 REMARK 465 VAL w 343 REMARK 465 VAL w 344 REMARK 465 PRO w 345 REMARK 465 LEU w 346 REMARK 465 THR w 347 REMARK 465 GLU w 348 REMARK 465 GLU w 349 REMARK 465 GLU w 350 REMARK 465 GLN w 351 REMARK 465 ILE w 352 REMARK 465 GLU w 353 REMARK 465 LYS w 354 REMARK 465 ASP w 355 REMARK 465 LEU w 356 REMARK 465 GLN w 357 REMARK 465 LYS d 38 REMARK 465 PHE d 39 REMARK 465 ALA d 40 REMARK 465 LYS d 41 REMARK 465 LEU d 42 REMARK 465 HIS d 43 REMARK 465 MET d 44 REMARK 465 GLY d 45 REMARK 465 THR d 46 REMARK 465 ASP d 47 REMARK 465 ASP d 48 REMARK 465 VAL d 49 REMARK 465 ARG d 50 REMARK 465 LEU d 51 REMARK 465 ALA d 52 REMARK 465 PRO d 53 REMARK 465 VAL B 29 REMARK 465 LYS B 30 REMARK 465 ALA B 31 REMARK 465 PHE B 32 REMARK 465 PRO B 33 REMARK 465 LYS B 34 REMARK 465 ASP B 35 REMARK 465 ASP B 36 REMARK 465 ARG B 37 REMARK 465 SER B 38 REMARK 465 LYS B 39 REMARK 465 PRO B 40 REMARK 465 VAL B 41 REMARK 465 ALA B 42 REMARK 465 LEU B 43 REMARK 465 THR B 44 REMARK 465 SER B 45 REMARK 465 PHE B 46 REMARK 465 PRO B 83 REMARK 465 VAL B 84 REMARK 465 VAL B 85 REMARK 465 VAL B 86 REMARK 465 VAL B 87 REMARK 465 GLY B 88 REMARK 465 VAL B 89 REMARK 465 VAL B 90 REMARK 465 GLY B 91 REMARK 465 TYR B 92 REMARK 465 VAL B 93 REMARK 465 GLU B 94 REMARK 465 THR B 95 REMARK 465 PRO B 96 REMARK 465 ARG B 97 REMARK 465 GLY B 98 REMARK 465 LEU B 99 REMARK 465 ARG B 100 REMARK 465 SER B 101 REMARK 465 LEU B 102 REMARK 465 THR B 103 REMARK 465 THR B 104 REMARK 465 VAL B 105 REMARK 465 TRP B 106 REMARK 465 ALA B 107 REMARK 465 GLU B 108 REMARK 465 HIS B 109 REMARK 465 LEU B 110 REMARK 465 SER B 111 REMARK 465 ASP B 112 REMARK 465 GLU B 113 REMARK 465 VAL B 114 REMARK 465 LYS B 115 REMARK 465 ARG B 116 REMARK 465 ARG B 117 REMARK 465 PHE B 118 REMARK 465 TYR B 119 REMARK 465 LYS B 120 REMARK 465 ASN B 121 REMARK 465 TRP B 122 REMARK 465 TYR B 123 REMARK 465 LYS B 124 REMARK 465 SER B 125 REMARK 465 LYS B 126 REMARK 465 LYS B 127 REMARK 465 LYS B 128 REMARK 465 ALA B 129 REMARK 465 PHE B 130 REMARK 465 THR B 131 REMARK 465 LYS B 132 REMARK 465 TYR B 133 REMARK 465 SER B 134 REMARK 465 ALA B 135 REMARK 465 LYS B 136 REMARK 465 TYR B 137 REMARK 465 ALA B 138 REMARK 465 GLN B 139 REMARK 465 ASP B 140 REMARK 465 GLY B 141 REMARK 465 ALA B 142 REMARK 465 GLY B 143 REMARK 465 ILE B 144 REMARK 465 GLU B 145 REMARK 465 ARG B 146 REMARK 465 GLU B 147 REMARK 465 LEU B 148 REMARK 465 ALA B 149 REMARK 465 ARG B 150 REMARK 465 ILE B 151 REMARK 465 LYS B 152 REMARK 465 LYS B 153 REMARK 465 TYR B 154 REMARK 465 ALA B 155 REMARK 465 SER B 156 REMARK 465 VAL B 157 REMARK 465 VAL B 158 REMARK 465 ARG B 159 REMARK 465 VAL B 160 REMARK 465 LEU B 161 REMARK 465 VAL B 162 REMARK 465 HIS B 163 REMARK 465 THR B 164 REMARK 465 GLN B 165 REMARK 465 ILE B 166 REMARK 465 ARG B 167 REMARK 465 LYS B 168 REMARK 465 LYS B 174 REMARK 465 LYS B 175 REMARK 465 ALA B 176 REMARK 465 HIS B 177 REMARK 465 LEU B 178 REMARK 465 ALA B 179 REMARK 465 GLU B 180 REMARK 465 ILE B 181 REMARK 465 GLN B 182 REMARK 465 LEU B 183 REMARK 465 ASN B 184 REMARK 465 GLY B 185 REMARK 465 GLY B 186 REMARK 465 SER B 187 REMARK 465 ILE B 188 REMARK 465 SER B 189 REMARK 465 GLU B 190 REMARK 465 LYS B 191 REMARK 465 VAL B 192 REMARK 465 ASP B 193 REMARK 465 TRP B 194 REMARK 465 ALA B 195 REMARK 465 ARG B 196 REMARK 465 GLU B 197 REMARK 465 HIS B 198 REMARK 465 PHE B 199 REMARK 465 GLU B 200 REMARK 465 LYS B 201 REMARK 465 THR B 202 REMARK 465 VAL B 203 REMARK 465 ALA B 204 REMARK 465 VAL B 205 REMARK 465 ASP B 206 REMARK 465 SER B 207 REMARK 465 VAL B 208 REMARK 465 VAL B 229 REMARK 465 THR B 230 REMARK 465 HIS B 231 REMARK 465 ARG B 232 REMARK 465 TRP B 233 REMARK 465 GLY B 234 REMARK 465 THR B 235 REMARK 465 LYS B 236 REMARK 465 LYS B 237 REMARK 465 LEU B 238 REMARK 465 PRO B 239 REMARK 465 ARG B 240 REMARK 465 LYS B 241 REMARK 465 THR B 242 REMARK 465 HIS B 243 REMARK 465 ARG B 244 REMARK 465 GLY B 245 REMARK 465 LEU B 246 REMARK 465 ARG B 247 REMARK 465 LYS B 248 REMARK 465 VAL B 249 REMARK 465 ALA B 250 REMARK 465 CYS B 251 REMARK 465 ILE B 252 REMARK 465 GLY B 253 REMARK 465 ALA B 254 REMARK 465 TRP B 255 REMARK 465 HIS B 256 REMARK 465 PRO B 257 REMARK 465 ALA B 258 REMARK 465 HIS B 259 REMARK 465 VAL B 260 REMARK 465 MET B 261 REMARK 465 TRP B 262 REMARK 465 SER B 263 REMARK 465 GLY B 286 REMARK 465 LYS B 287 REMARK 465 GLY B 288 REMARK 465 ASP B 289 REMARK 465 ASP B 290 REMARK 465 GLU B 291 REMARK 465 ALA B 292 REMARK 465 LEU B 342 REMARK 465 TYR B 343 REMARK 465 THR B 344 REMARK 465 ASN B 345 REMARK 465 THR B 346 REMARK 465 THR y 20 REMARK 465 ASN y 21 REMARK 465 THR y 22 REMARK 465 TYR y 23 REMARK 465 GLU y 39 REMARK 465 ALA y 40 REMARK 465 GLU y 41 REMARK 465 LEU y 42 REMARK 465 GLY y 43 REMARK 465 ASP y 44 REMARK 465 ALA y 45 REMARK 465 ILE y 46 REMARK 465 PRO y 47 REMARK 465 ILE y 48 REMARK 465 ARG y 67 REMARK 465 ARG y 68 REMARK 465 GLY y 69 REMARK 465 ARG y 85 REMARK 465 ASN y 86 REMARK 465 SER y 87 REMARK 465 LEU y 88 REMARK 465 PRO y 89 REMARK 465 ASP y 90 REMARK 465 SER y 91 REMARK 465 VAL y 92 REMARK 465 LYS y 93 REMARK 465 ILE y 94 REMARK 465 SER y 130 REMARK 465 ASP y 131 REMARK 465 VAL y 132 REMARK 465 LEU y 133 REMARK 465 GLY y 134 REMARK 465 VAL y 135 REMARK 465 LEU y 154 REMARK 465 SER y 155 REMARK 465 ASN y 156 REMARK 465 GLN y 157 REMARK 465 GLY y 158 REMARK 465 GLU y 171 REMARK 465 GLU y 172 REMARK 465 LEU y 173 REMARK 465 SER y 174 REMARK 465 SER y 175 REMARK 465 LEU y 176 REMARK 465 LEU y 177 REMARK 465 GLN y 178 REMARK 465 VAL y 179 REMARK 465 PRO y 180 REMARK 465 ASN y 200 REMARK 465 ASP y 201 REMARK 465 TYR y 202 REMARK 465 GLU y 219 REMARK 465 SER y 220 REMARK 465 ILE y 221 REMARK 465 PHE y 222 REMARK 465 ARG y 223 REMARK 465 LEU y 224 REMARK 465 GLN y 225 REMARK 465 ASP y 226 REMARK 465 ALA y 227 REMARK 465 GLN y 228 REMARK 465 PRO y 229 REMARK 465 GLU y 230 REMARK 465 SER y 231 REMARK 465 ILE y 232 REMARK 465 SER y 233 REMARK 465 GLY y 234 REMARK 465 ASN y 235 REMARK 465 LEU y 236 REMARK 465 ARG y 237 REMARK 465 ASP y 238 REMARK 465 THR y 239 REMARK 465 LEU y 240 REMARK 465 ILE y 241 REMARK 465 GLU y 242 REMARK 465 THR y 243 REMARK 465 TYR y 244 REMARK 465 SER y 245 REMARK 465 ILE q 299 REMARK 465 GLY q 300 REMARK 465 SER q 301 REMARK 465 TRP q 302 REMARK 465 THR q 303 REMARK 465 LYS q 304 REMARK 465 VAL q 305 REMARK 465 GLY q 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' C 1 2343 OP1 U 1 3056 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U 13306 C2 - N1 - C1' ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE 5 43 -9.34 71.72 REMARK 500 ASN V 28 48.62 -90.79 REMARK 500 ASN V 47 0.00 67.77 REMARK 500 ARG V 70 57.00 -95.94 REMARK 500 PHE u 8 -61.50 -92.84 REMARK 500 LYS w 48 -10.11 72.84 REMARK 500 PRO w 69 159.43 -49.44 REMARK 500 ASN w 71 36.77 -99.45 REMARK 500 SER w 93 145.68 -171.00 REMARK 500 THR w 96 51.22 -92.82 REMARK 500 TRP w 128 -9.93 72.45 REMARK 500 ALA w 187 48.55 -83.06 REMARK 500 ARG w 189 129.22 -32.23 REMARK 500 ASN w 190 1.34 -63.73 REMARK 500 PRO w 236 45.09 -84.78 REMARK 500 LEU w 310 -62.71 -93.84 REMARK 500 LEU b 513 -162.97 -79.65 REMARK 500 LYS b 514 129.79 -35.36 REMARK 500 HIS R 134 -166.79 -160.96 REMARK 500 ASN B 279 65.63 64.28 REMARK 500 ARG B 300 53.64 -92.27 REMARK 500 LYS B 333 -1.01 69.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-24269 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-24270 RELATED DB: EMDB REMARK 900 RELATED ID: 7NAC RELATED DB: PDB REMARK 900 RELATED ID: 7NAD RELATED DB: PDB REMARK 900 RELATED ID: EMD-24271 RELATED DB: EMDB REMARK 900 STATE E2 NUCLEOLAR 60S RIBOSOMAL BIOGENESIS INTERMEDIATE - SPB1-MTD REMARK 900 LOCAL MODEL DBREF 7NAF 1 828 3380 PDB 7NAF 7NAF 828 3380 DBREF 7NAF 5 6 232 PDB 7NAF 7NAF 6 232 DBREF 7NAF 8 3 41 UNP P39744 NOC2_YEAST 3 41 DBREF 7NAF V 4 137 UNP P0CX41 RL23A_YEAST 4 137 DBREF 7NAF u 1 65 UNP Q07915 RLP24_YEAST 1 65 DBREF 7NAF w 1 389 UNP P25582 SPB1_YEAST 1 389 DBREF 7NAF b 20 521 PDB 7NAF 7NAF 20 521 DBREF 7NAF d 13 72 UNP P0C2H8 RL31A_YEAST 13 72 DBREF 7NAF U 74 91 PDB 7NAF 7NAF 74 91 DBREF 7NAF R 53 145 PDB 7NAF 7NAF 53 145 DBREF 7NAF c 25 91 PDB 7NAF 7NAF 25 91 DBREF 7NAF B 12 387 UNP P14126 RL3_YEAST 12 387 DBREF 7NAF z 2 7 UNP P38202 YBC8_YEAST 2 7 DBREF 7NAF s 1 7 UNP P40010 NUG1_YEAST 1 7 DBREF 7NAF y 1 245 UNP Q12522 IF6_YEAST 1 245 DBREF 7NAF q 285 320 UNP P40991 NOP2_YEAST 285 320 SEQRES 1 1 378 A U A G G G U G A A G C C SEQRES 2 1 378 A G A G G A A A C U C U G SEQRES 3 1 378 G U G G A G G C U C G A A SEQRES 4 1 378 A A U G G A A U U A G A C SEQRES 5 1 378 U G A A G G U C G G C G C SEQRES 6 1 378 C C U G G A G U U A U C U SEQRES 7 1 378 U U U C U U G U U U A U C SEQRES 8 1 378 C C G C U U C G G C C C C SEQRES 9 1 378 A A G G U G A A C A G C C SEQRES 10 1 378 U C U A A U G U A G A U A SEQRES 11 1 378 A G G G A A G U C G G G G SEQRES 12 1 378 G A A U C U G A C U G U U SEQRES 13 1 378 A A C G A G A U U C C C A SEQRES 14 1 378 C U G U C C C U A U C U A SEQRES 15 1 378 C U C G G G G A A C U G G SEQRES 16 1 378 C U U G U C G G C U C U U SEQRES 17 1 378 C C U A U C A U A C C A U SEQRES 18 1 378 U C G G U A A G C G U U G SEQRES 19 1 378 G A U OMU OMG PSU U C A C C C A SEQRES 20 1 378 C U A A U A G G G A A C G SEQRES 21 1 378 U G A2M G C U G A A U U G A SEQRES 22 1 378 A C U U A G G A A C A G U SEQRES 23 1 378 U C A U U C G G A U A A U SEQRES 24 1 378 U G G U U U U U G C G G C SEQRES 25 1 378 U G U C U G A U C A G G C SEQRES 26 1 378 A U U G C C G C G A A G C SEQRES 27 1 378 U A C C A U C C G A A U C SEQRES 28 1 378 U A U A U A U U G U A A G SEQRES 29 1 378 C U G A G A U U A A G C C SEQRES 30 1 378 U SEQRES 1 5 105 ASN ARG GLN ILE LEU THR ARG GLY LYS GLN SER LYS LYS SEQRES 2 5 105 PHE GLY THR ASP GLU VAL THR PHE ASP LYS ASP SER ARG SEQRES 3 5 105 LEU ASP TYR LEU THR GLY PHE HIS LYS ARG LYS LEU GLN SEQRES 4 5 105 ARG GLN LYS LYS ALA GLN GLU PHE ILE LYS GLU GLN GLU SEQRES 5 5 105 ARG LEU ARG LYS ILE GLU GLU ARG GLN LYS ILE ARG GLN SEQRES 6 5 105 GLU ARG LYS GLU VAL MET GLU GLU GLN LEU LYS THR PHE SEQRES 7 5 105 LYS GLU SER LEU ASN LEU LYS PHE ARG TYR LEU THR LYS SEQRES 8 5 105 ASN GLU ARG ARG ILE ASN GLN ARG LYS ALA ASN ASP ASN SEQRES 9 5 105 LYS SEQRES 1 8 39 LYS VAL SER LYS SER THR LYS LYS PHE GLN SER LYS HIS SEQRES 2 8 39 LEU LYS HIS THR LEU ASP GLN ARG ARG LYS GLU LYS ILE SEQRES 3 8 39 GLN LYS LYS ARG ILE GLN GLY ARG ARG GLY ASN LYS THR SEQRES 1 V 134 ASN GLY ALA GLN GLY THR LYS PHE ARG ILE SER LEU GLY SEQRES 2 V 134 LEU PRO VAL GLY ALA ILE MET ASN CYS ALA ASP ASN SER SEQRES 3 V 134 GLY ALA ARG ASN LEU TYR ILE ILE ALA VAL LYS GLY SER SEQRES 4 V 134 GLY SER ARG LEU ASN ARG LEU PRO ALA ALA SER LEU GLY SEQRES 5 V 134 ASP MET VAL MET ALA THR VAL LYS LYS GLY LYS PRO GLU SEQRES 6 V 134 LEU ARG LYS LYS VAL MET PRO ALA ILE VAL VAL ARG GLN SEQRES 7 V 134 ALA LYS SER TRP ARG ARG ARG ASP GLY VAL PHE LEU TYR SEQRES 8 V 134 PHE GLU ASP ASN ALA GLY VAL ILE ALA ASN PRO LYS GLY SEQRES 9 V 134 GLU MET LYS GLY SER ALA ILE THR GLY PRO VAL GLY LYS SEQRES 10 V 134 GLU CYS ALA ASP LEU TRP PRO ARG VAL ALA SER ASN SER SEQRES 11 V 134 GLY VAL VAL VAL SEQRES 1 u 65 MET ARG ILE TYR GLN CYS HIS PHE CYS SER SER PRO CYS SEQRES 2 u 65 TYR PRO GLY HIS GLY ILE MET PHE VAL ARG ASN ASP ALA SEQRES 3 u 65 LYS GLU PHE ARG PHE CYS ARG SER LYS CYS HIS LYS ALA SEQRES 4 u 65 PHE LYS GLN ARG ARG ASN PRO ARG LYS LEU LYS TRP THR SEQRES 5 u 65 LYS ALA PHE ARG LYS ALA ALA GLY LYS GLU LEU ALA VAL SEQRES 1 w 389 MET GLY LYS THR GLN LYS LYS ASN SER LYS GLY ARG LEU SEQRES 2 w 389 ASP ARG TYR TYR TYR LEU ALA LYS GLU LYS GLY TYR ARG SEQRES 3 w 389 ALA ARG SER SER PHE LYS ILE ILE GLN ILE ASN GLU LYS SEQRES 4 w 389 TYR GLY HIS PHE LEU GLU LYS SER LYS VAL VAL ILE ASP SEQRES 5 w 389 LEU CYS ALA ALA PRO GLY SER TRP CYS GLN VAL ALA SER SEQRES 6 w 389 LYS LEU CYS PRO VAL ASN SER LEU ILE ILE GLY VAL ASP SEQRES 7 w 389 ILE VAL PRO MET LYS PRO MET PRO ASN VAL ILE THR PHE SEQRES 8 w 389 GLN SER ASP ILE THR THR GLU ASP CYS ARG SER LYS LEU SEQRES 9 w 389 ARG GLY TYR MET LYS THR TRP LYS ALA ASP THR VAL LEU SEQRES 10 w 389 HIS ASP GLY ALA PRO ASN VAL GLY LEU GLY TRP VAL GLN SEQRES 11 w 389 ASP ALA PHE THR GLN SER GLN LEU THR LEU GLN ALA LEU SEQRES 12 w 389 LYS LEU ALA VAL GLU ASN LEU VAL VAL ASN GLY THR PHE SEQRES 13 w 389 VAL THR LYS ILE PHE ARG SER LYS ASP TYR ASN LYS LEU SEQRES 14 w 389 ILE TRP VAL PHE GLN GLN LEU PHE GLU LYS VAL GLU ALA SEQRES 15 w 389 THR LYS PRO PRO ALA SER ARG ASN VAL SER ALA GLU ILE SEQRES 16 w 389 PHE VAL VAL CYS LYS GLY PHE LYS ALA PRO LYS ARG LEU SEQRES 17 w 389 ASP PRO ARG LEU LEU ASP PRO LYS GLU VAL PHE GLU GLU SEQRES 18 w 389 LEU PRO ASP GLY GLN GLN ASN MET GLU SER LYS ILE TYR SEQRES 19 w 389 ASN PRO GLU LYS LYS VAL ARG LYS ARG GLN GLY TYR GLU SEQRES 20 w 389 GLU GLY ASP ASN LEU LEU TYR HIS GLU THR SER ILE LEU SEQRES 21 w 389 ASP PHE VAL ARG THR GLU ASP PRO ILE SER MET LEU GLY SEQRES 22 w 389 GLU MET ASN LYS PHE THR ILE ASP GLU ASN ASP HIS GLU SEQRES 23 w 389 TRP LYS ILE LEU LYS LYS LEU LYS GLN THR THR ASP GLU SEQRES 24 w 389 PHE ARG SER CYS ILE GLU ASP LEU LYS VAL LEU GLY LYS SEQRES 25 w 389 LYS ASP PHE LYS MET ILE LEU ARG TRP ARG LYS ILE ALA SEQRES 26 w 389 ARG GLU ILE LEU GLY ILE GLU VAL LYS ASP ASP ALA LYS SEQRES 27 w 389 THR GLU ILE GLU VAL VAL PRO LEU THR GLU GLU GLU GLN SEQRES 28 w 389 ILE GLU LYS ASP LEU GLN GLY LEU GLN GLU LYS GLN ARG SEQRES 29 w 389 LEU ASN VAL LYS ARG GLU ARG ARG ARG LYS ASN GLU MET SEQRES 30 w 389 LYS GLN LYS GLU LEU GLN ARG MET GLN MET ASN MET SEQRES 1 b 74 ILE VAL LEU ASN ARG THR GLN ARG LYS THR PRO THR VAL SEQRES 2 b 74 ILE ARG PRO GLY PHE LYS ILE THR ARG ILE ARG ALA PHE SEQRES 3 b 74 TYR MET ARG LYS VAL LYS TYR THR GLY GLU GLY MET PRO SEQRES 4 b 74 GLU ILE LEU ASP GLY LYS ASN VAL TYR ILE ARG ASN ARG SEQRES 5 b 74 GLN LYS THR MET ILE ALA GLU ALA ARG ASN ARG LYS SER SEQRES 6 b 74 LEU LYS ASN LYS ALA ILE MET PRO ARG SEQRES 1 d 60 THR ILE ASN LEU HIS LYS ARG LEU HIS GLY VAL SER PHE SEQRES 2 d 60 LYS LYS ARG ALA PRO ARG ALA VAL LYS GLU ILE LYS LYS SEQRES 3 d 60 PHE ALA LYS LEU HIS MET GLY THR ASP ASP VAL ARG LEU SEQRES 4 d 60 ALA PRO GLU LEU ASN GLN ALA ILE TRP LYS ARG GLY VAL SEQRES 5 d 60 LYS GLY VAL GLU TYR ARG LEU ARG SEQRES 1 U 18 LYS TYR LEU LYS TYR LEU THR LYS LYS TYR LEU LYS LYS SEQRES 2 U 18 ASN GLN LEU ARG ASP SEQRES 1 R 62 LYS ALA VAL THR VAL HIS SER LYS ARG LEU PRO SER GLN SEQRES 2 R 62 VAL VAL TRP ILE ARG ARG LEU ARG VAL LEU ARG ARG LEU SEQRES 3 R 62 LEU ALA LYS TYR ARG ILE ASP LYS HIS LEU TYR HIS VAL SEQRES 4 R 62 LEU TYR LYS GLU SER LYS GLY ASN ALA PHE LYS HIS LYS SEQRES 5 R 62 ARG ALA LEU VAL GLU HIS ILE ILE GLN ALA SEQRES 1 c 41 LEU GLY TYR ILE ILE ILE ALA ALA ASN THR PRO VAL LEU SEQRES 2 c 41 ARG LYS SER VAL TYR TYR PHE GLN GLY GLY ASN ASN GLU SEQRES 3 c 41 LEU GLY THR ALA VAL GLY LYS LEU PHE ARG VAL GLY VAL SEQRES 4 c 41 VAL SER SEQRES 1 B 376 GLY HIS LEU GLY PHE LEU PRO ARG LYS ARG ALA ALA SER SEQRES 2 B 376 ILE ARG ALA ARG VAL LYS ALA PHE PRO LYS ASP ASP ARG SEQRES 3 B 376 SER LYS PRO VAL ALA LEU THR SER PHE LEU GLY TYR LYS SEQRES 4 B 376 ALA GLY MET THR THR ILE VAL ARG ASP LEU ASP ARG PRO SEQRES 5 B 376 GLY SER LYS PHE HIS LYS ARG GLU VAL VAL GLU ALA VAL SEQRES 6 B 376 THR VAL VAL ASP THR PRO PRO VAL VAL VAL VAL GLY VAL SEQRES 7 B 376 VAL GLY TYR VAL GLU THR PRO ARG GLY LEU ARG SER LEU SEQRES 8 B 376 THR THR VAL TRP ALA GLU HIS LEU SER ASP GLU VAL LYS SEQRES 9 B 376 ARG ARG PHE TYR LYS ASN TRP TYR LYS SER LYS LYS LYS SEQRES 10 B 376 ALA PHE THR LYS TYR SER ALA LYS TYR ALA GLN ASP GLY SEQRES 11 B 376 ALA GLY ILE GLU ARG GLU LEU ALA ARG ILE LYS LYS TYR SEQRES 12 B 376 ALA SER VAL VAL ARG VAL LEU VAL HIS THR GLN ILE ARG SEQRES 13 B 376 LYS THR PRO LEU ALA GLN LYS LYS ALA HIS LEU ALA GLU SEQRES 14 B 376 ILE GLN LEU ASN GLY GLY SER ILE SER GLU LYS VAL ASP SEQRES 15 B 376 TRP ALA ARG GLU HIS PHE GLU LYS THR VAL ALA VAL ASP SEQRES 16 B 376 SER VAL PHE GLU GLN ASN GLU MET ILE ASP ALA ILE ALA SEQRES 17 B 376 VAL THR LYS GLY HIS GLY PHE GLU GLY VAL THR HIS ARG SEQRES 18 B 376 TRP GLY THR LYS LYS LEU PRO ARG LYS THR HIS ARG GLY SEQRES 19 B 376 LEU ARG LYS VAL ALA CYS ILE GLY ALA TRP HIS PRO ALA SEQRES 20 B 376 HIS VAL MET TRP SER VAL ALA ARG ALA GLY GLN ARG GLY SEQRES 21 B 376 TYR HIS SER ARG THR SER ILE ASN HIS LYS ILE TYR ARG SEQRES 22 B 376 VAL GLY LYS GLY ASP ASP GLU ALA ASN GLY ALA THR SER SEQRES 23 B 376 PHE ASP ARG THR LYS LYS THR ILE THR PRO MET GLY GLY SEQRES 24 B 376 PHE VAL HIS TYR GLY GLU ILE LYS ASN ASP PHE ILE MET SEQRES 25 B 376 VAL LYS GLY CYS ILE PRO GLY ASN ARG LYS ARG ILE VAL SEQRES 26 B 376 THR LEU ARG LYS SER LEU TYR THR ASN THR SER ARG LYS SEQRES 27 B 376 ALA LEU GLU GLU VAL SER LEU LYS TRP ILE ASP THR ALA SEQRES 28 B 376 SER LYS PHE GLY LYS GLY ARG PHE GLN THR PRO ALA GLU SEQRES 29 B 376 LYS HIS ALA PHE MET GLY THR LEU LYS LYS ASP LEU SEQRES 1 z 6 ALA LYS SER LEU ARG ALA SEQRES 1 s 7 MET ARG VAL ARG LYS ARG GLN SEQRES 1 y 245 MET ALA THR ARG THR GLN PHE GLU ASN SER ASN GLU ILE SEQRES 2 y 245 GLY VAL PHE SER LYS LEU THR ASN THR TYR CYS LEU VAL SEQRES 3 y 245 ALA VAL GLY GLY SER GLU ASN PHE TYR SER ALA PHE GLU SEQRES 4 y 245 ALA GLU LEU GLY ASP ALA ILE PRO ILE VAL HIS THR THR SEQRES 5 y 245 ILE ALA GLY THR ARG ILE ILE GLY ARG MET THR ALA GLY SEQRES 6 y 245 ASN ARG ARG GLY LEU LEU VAL PRO THR GLN THR THR ASP SEQRES 7 y 245 GLN GLU LEU GLN HIS LEU ARG ASN SER LEU PRO ASP SER SEQRES 8 y 245 VAL LYS ILE GLN ARG VAL GLU GLU ARG LEU SER ALA LEU SEQRES 9 y 245 GLY ASN VAL ILE CYS CYS ASN ASP TYR VAL ALA LEU VAL SEQRES 10 y 245 HIS PRO ASP ILE ASP ARG GLU THR GLU GLU LEU ILE SER SEQRES 11 y 245 ASP VAL LEU GLY VAL GLU VAL PHE ARG GLN THR ILE SER SEQRES 12 y 245 GLY ASN ILE LEU VAL GLY SER TYR CYS SER LEU SER ASN SEQRES 13 y 245 GLN GLY GLY LEU VAL HIS PRO GLN THR SER VAL GLN ASP SEQRES 14 y 245 GLN GLU GLU LEU SER SER LEU LEU GLN VAL PRO LEU VAL SEQRES 15 y 245 ALA GLY THR VAL ASN ARG GLY SER SER VAL VAL GLY ALA SEQRES 16 y 245 GLY MET VAL VAL ASN ASP TYR LEU ALA VAL THR GLY LEU SEQRES 17 y 245 ASP THR THR ALA PRO GLU LEU SER VAL ILE GLU SER ILE SEQRES 18 y 245 PHE ARG LEU GLN ASP ALA GLN PRO GLU SER ILE SER GLY SEQRES 19 y 245 ASN LEU ARG ASP THR LEU ILE GLU THR TYR SER SEQRES 1 q 36 LEU ALA GLN THR LEU VAL ASN ARG GLY VAL ASN LEU GLN SEQRES 2 q 36 PRO ILE GLY SER TRP THR LYS VAL GLY LEU GLN ILE PHE SEQRES 3 q 36 ASP SER GLN VAL PRO ILE GLY ALA THR PRO HET OMU 12921 21 HET OMG 12922 24 HET PSU 12923 20 HET A2M 12946 23 HET SAH w 801 26 HETNAM OMU O2'-METHYLURIDINE 5'-MONOPHOSPHATE HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM A2M 2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 1 OMU C10 H15 N2 O9 P FORMUL 1 OMG C11 H16 N5 O8 P FORMUL 1 PSU C9 H13 N2 O9 P FORMUL 1 A2M C11 H16 N5 O7 P FORMUL 17 SAH C14 H20 N6 O5 S FORMUL 18 HOH *2(H2 O) HELIX 1 AA1 ASP 5 32 GLY 5 42 1 11 HELIX 2 AA2 HIS 5 44 LEU 5 94 1 51 HELIX 3 AA3 THR 5 217 ASN 5 231 1 15 HELIX 4 AA4 SER 8 5 HIS 8 15 1 11 HELIX 5 AA5 HIS 8 15 ILE 8 33 1 19 HELIX 6 AA6 GLU V 121 TRP V 126 1 6 HELIX 7 AA7 TRP V 126 ASN V 132 1 7 HELIX 8 AA8 ARG u 33 GLN u 42 1 10 HELIX 9 AA9 THR u 52 ALA u 58 1 7 HELIX 10 AB1 GLN w 5 SER w 9 5 5 HELIX 11 AB2 ASP w 14 GLY w 24 1 11 HELIX 12 AB3 SER w 29 TYR w 40 1 12 HELIX 13 AB4 GLY w 58 CYS w 68 1 11 HELIX 14 AB5 THR w 97 MET w 108 1 12 HELIX 15 AB6 TRP w 128 GLU w 148 1 21 HELIX 16 AB7 TYR w 166 GLN w 175 1 10 HELIX 17 AB8 PRO w 210 LEU w 213 5 4 HELIX 18 AB9 ASP w 214 PHE w 219 1 6 HELIX 19 AC1 MET w 229 TYR w 234 1 6 HELIX 20 AC2 ILE w 259 THR w 265 1 7 HELIX 21 AC3 ASP w 267 GLY w 273 1 7 HELIX 22 AC4 ASP w 284 LYS w 292 1 9 HELIX 23 AC5 PHE w 300 GLU w 305 1 6 HELIX 24 AC6 GLY w 311 LEU w 329 1 19 HELIX 25 AC7 LEU w 359 GLN w 386 1 28 HELIX 26 AC8 VAL b 21 LYS b 28 1 8 HELIX 27 AC9 LYS b 38 GLY b 56 1 19 HELIX 28 AD1 ARG b 497 LYS b 511 1 15 HELIX 29 AD2 LEU d 16 LEU d 20 1 5 HELIX 30 AD3 SER d 24 LYS d 26 5 3 HELIX 31 AD4 LYS d 27 GLU d 35 1 9 HELIX 32 AD5 LEU d 55 LYS d 61 1 7 HELIX 33 AD6 TYR U 75 ASN U 87 1 13 HELIX 34 AD7 PRO R 90 ARG R 110 1 21 HELIX 35 AD8 ASP R 116 GLY R 129 1 14 HELIX 36 AD9 HIS R 134 ALA R 145 1 12 HELIX 37 AE1 PRO c 49 SER c 54 1 6 HELIX 38 AE2 GLY c 73 GLY c 82 1 10 HELIX 39 AE3 HIS B 13 LEU B 17 5 5 HELIX 40 AE4 SER B 347 GLU B 352 5 6 HELIX 41 AE5 THR B 372 GLY B 381 1 10 HELIX 42 AE6 GLU y 12 PHE y 16 1 5 HELIX 43 AE7 GLU y 32 PHE y 38 1 7 HELIX 44 AE8 THR y 77 LEU y 84 1 8 HELIX 45 AE9 ALA y 103 VAL y 107 1 5 HELIX 46 AF1 ASP y 122 GLU y 127 1 6 HELIX 47 AF2 LEU y 147 CYS y 152 1 6 HELIX 48 AF3 THR y 211 ILE y 218 1 8 HELIX 49 AF4 ALA q 286 GLY q 293 1 8 SHEET 1 AA1 2 THR 5 26 VAL 5 29 0 SHEET 2 AA1 2 PRO w 205 LEU w 208 1 O LYS w 206 N ASP 5 27 SHEET 1 AA2 2 LEU V 17 PRO V 18 0 SHEET 2 AA2 2 ALA V 51 ALA V 52 -1 O ALA V 52 N LEU V 17 SHEET 1 AA3 6 ILE V 22 CYS V 25 0 SHEET 2 AA3 6 ALA V 31 VAL V 39 -1 O LEU V 34 N MET V 23 SHEET 3 AA3 6 MET V 57 GLY V 65 -1 O LYS V 64 N ARG V 32 SHEET 4 AA3 6 MET V 74 ARG V 80 -1 O MET V 74 N ALA V 60 SHEET 5 AA3 6 ALA V 99 ILE V 102 -1 O VAL V 101 N ILE V 77 SHEET 6 AA3 6 ILE V 22 CYS V 25 1 N ASN V 24 O GLY V 100 SHEET 1 AA4 4 TRP V 85 ARG V 87 0 SHEET 2 AA4 4 VAL V 91 PHE V 95 -1 O LEU V 93 N TRP V 85 SHEET 3 AA4 4 ILE u 19 VAL u 22 1 O MET u 20 N PHE V 92 SHEET 4 AA4 4 GLU u 28 ARG u 30 -1 O PHE u 29 N PHE u 21 SHEET 1 AA5 2 ILE V 114 VAL V 118 0 SHEET 2 AA5 2 SER V 133 VAL V 136 1 O VAL V 135 N VAL V 118 SHEET 1 AA6 2 TYR u 4 GLN u 5 0 SHEET 2 AA6 2 PRO u 12 CYS u 13 -1 O CYS u 13 N TYR u 4 SHEET 1 AA7 7 ILE w 89 GLN w 92 0 SHEET 2 AA7 7 ILE w 75 ASP w 78 1 N GLY w 76 O PHE w 91 SHEET 3 AA7 7 VAL w 50 LEU w 53 1 N ASP w 52 O ILE w 75 SHEET 4 AA7 7 ALA w 113 HIS w 118 1 O LEU w 117 N ILE w 51 SHEET 5 AA7 7 LEU w 150 PHE w 161 1 O VAL w 157 N HIS w 118 SHEET 6 AA7 7 GLU w 194 PHE w 202 -1 O ILE w 195 N ILE w 160 SHEET 7 AA7 7 PHE w 177 THR w 183 -1 N GLU w 181 O VAL w 198 SHEET 1 AA8 2 GLU w 256 SER w 258 0 SHEET 2 AA8 2 LYS w 277 THR w 279 1 O THR w 279 N THR w 257 SHEET 1 AA9 2 ILE b 435 LEU b 436 0 SHEET 2 AA9 2 LYS b 439 ASN b 440 -1 O LYS b 439 N LEU b 436 SHEET 1 AB1 2 ILE d 14 ASN d 15 0 SHEET 2 AB1 2 ARG d 70 LEU d 71 -1 O LEU d 71 N ILE d 14 SHEET 1 AB2 3 TYR c 68 TYR c 69 0 SHEET 2 AB2 3 ILE c 43 ILE c 44 1 N ILE c 44 O TYR c 68 SHEET 3 AB2 3 VAL c 89 VAL c 90 -1 O VAL c 90 N ILE c 43 SHEET 1 AB3 8 SER B 355 ASP B 360 0 SHEET 2 AB3 8 GLY B 48 LEU B 60 -1 N THR B 55 O ASP B 360 SHEET 3 AB3 8 ILE B 335 ARG B 339 -1 O VAL B 336 N GLY B 48 SHEET 4 AB3 8 MET B 214 VAL B 220 -1 N ILE B 218 O THR B 337 SHEET 5 AB3 8 SER B 274 ARG B 284 -1 O ARG B 275 N ALA B 219 SHEET 6 AB3 8 PHE B 321 LYS B 325 -1 O MET B 323 N TYR B 283 SHEET 7 AB3 8 ARG B 70 ASP B 80 -1 N THR B 77 O VAL B 324 SHEET 8 AB3 8 GLY B 48 LEU B 60 -1 N TYR B 49 O ASP B 80 SHEET 1 AB4 2 GLY B 225 GLU B 227 0 SHEET 2 AB4 2 GLY B 268 ARG B 270 -1 O GLY B 268 N GLU B 227 SHEET 1 AB5 2 ALA y 2 ARG y 4 0 SHEET 2 AB5 2 ALA y 204 THR y 206 1 O THR y 206 N THR y 3 SHEET 1 AB6 3 SER y 17 LYS y 18 0 SHEET 2 AB6 3 LEU y 25 ALA y 27 -1 O LEU y 25 N LYS y 18 SHEET 3 AB6 3 HIS y 50 THR y 51 1 O THR y 51 N VAL y 26 SHEET 1 AB7 2 VAL y 72 PRO y 73 0 SHEET 2 AB7 2 ARG y 96 VAL y 97 1 O VAL y 97 N VAL y 72 SHEET 1 AB8 3 ILE y 108 CYS y 110 0 SHEET 2 AB8 3 ALA y 115 VAL y 117 -1 O LEU y 116 N CYS y 109 SHEET 3 AB8 3 VAL y 137 ARG y 139 1 O PHE y 138 N ALA y 115 SHEET 1 AB9 2 LEU y 160 VAL y 161 0 SHEET 2 AB9 2 VAL y 182 ALA y 183 1 O VAL y 182 N VAL y 161 SHEET 1 AC1 2 VAL q 294 GLN q 297 0 SHEET 2 AC1 2 GLN q 308 SER q 312 -1 O PHE q 310 N ASN q 295 LINK O3' U 12920 P OMU 12921 1555 1555 1.61 LINK O3' OMU 12921 P OMG 12922 1555 1555 1.60 LINK O3' OMG 12922 P PSU 12923 1555 1555 1.60 LINK O3' PSU 12923 P U 12924 1555 1555 1.61 LINK O3' G 12945 P A2M 12946 1555 1555 1.61 LINK O3' A2M 12946 P G 12947 1555 1555 1.61 CISPEP 1 ALA w 56 PRO w 57 0 -2.84 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000