HEADER SIGNALING PROTEIN 21-JUN-21 7NAM TITLE LRP6_E1 IN COMPLEX WITH LR-EET-3.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LRP-6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TRYPSIN INHIBITOR 2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LRP6; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630 KEYWDS LRP6, WNT SIGNALING, CYSTINE KNOT PEPTIDE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HANSEN,R.N.HANNOUSH REVDAT 3 25-OCT-23 7NAM 1 REMARK REVDAT 2 11-JAN-23 7NAM 1 JRNL REVDAT 1 29-JUN-22 7NAM 0 JRNL AUTH S.HANSEN,Y.ZHANG,S.HWANG,A.NABHAN,W.LI,J.FUHRMANN, JRNL AUTH 2 Y.KSCHONSAK,L.ZHOU,A.H.NILE,X.GAO,R.PISKOL, JRNL AUTH 3 F.DE SOUSA E MELO,F.J.DE SAUVAGE,R.N.HANNOUSH JRNL TITL DIRECTED EVOLUTION IDENTIFIES HIGH-AFFINITY CYSTINE-KNOT JRNL TITL 2 PEPTIDE AGONISTS AND ANTAGONISTS OF WNT/ BETA-CATENIN JRNL TITL 3 SIGNALING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 27119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 36343233 JRNL DOI 10.1073/PNAS.2207327119 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 47430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1210 - 4.1128 0.98 2811 117 0.1299 0.1204 REMARK 3 2 4.1128 - 3.2649 0.97 2658 136 0.1337 0.1571 REMARK 3 3 3.2649 - 2.8523 0.97 2636 174 0.1610 0.1909 REMARK 3 4 2.8523 - 2.5915 0.98 2673 126 0.1766 0.2013 REMARK 3 5 2.5915 - 2.4058 0.98 2690 133 0.1863 0.2345 REMARK 3 6 2.4058 - 2.2640 0.95 2525 163 0.1810 0.2195 REMARK 3 7 2.2640 - 2.1506 0.98 2660 135 0.1985 0.2314 REMARK 3 8 2.1506 - 2.0570 0.97 2636 118 0.2072 0.2216 REMARK 3 9 2.0570 - 1.9778 0.97 2626 143 0.2064 0.2482 REMARK 3 10 1.9778 - 1.9095 0.98 2640 138 0.2231 0.2707 REMARK 3 11 1.9095 - 1.8498 0.96 2618 151 0.2177 0.2082 REMARK 3 12 1.8498 - 1.7970 0.97 2571 157 0.2325 0.2577 REMARK 3 13 1.7970 - 1.7496 0.98 2667 132 0.2404 0.2639 REMARK 3 14 1.7496 - 1.7070 0.98 2661 143 0.2608 0.2724 REMARK 3 15 1.7070 - 1.6682 0.99 2654 156 0.2699 0.2734 REMARK 3 16 1.6682 - 1.6327 0.99 2626 156 0.2970 0.3230 REMARK 3 17 1.6327 - 1.6000 0.99 2647 153 0.2941 0.2901 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2942 REMARK 3 ANGLE : 1.154 3974 REMARK 3 CHIRALITY : 0.046 449 REMARK 3 PLANARITY : 0.006 505 REMARK 3 DIHEDRAL : 14.392 1085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6633 -9.5064 23.8329 REMARK 3 T TENSOR REMARK 3 T11: 0.2375 T22: 0.2319 REMARK 3 T33: 0.3304 T12: -0.0481 REMARK 3 T13: -0.0401 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.4878 L22: 1.6206 REMARK 3 L33: 2.3769 L12: -0.7373 REMARK 3 L13: -0.5767 L23: 0.0304 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.0355 S13: -0.2806 REMARK 3 S21: -0.1735 S22: 0.0307 S23: 0.4497 REMARK 3 S31: 0.3365 S32: -0.3325 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7398 2.3468 20.1449 REMARK 3 T TENSOR REMARK 3 T11: 0.2090 T22: 0.2226 REMARK 3 T33: 0.2098 T12: -0.0174 REMARK 3 T13: 0.0408 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.6172 L22: 1.1503 REMARK 3 L33: 1.9732 L12: -0.0959 REMARK 3 L13: 0.2716 L23: -0.0450 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0694 S13: 0.1402 REMARK 3 S21: -0.1902 S22: 0.0127 S23: -0.0845 REMARK 3 S31: -0.1513 S32: 0.3071 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9262 4.5201 7.9014 REMARK 3 T TENSOR REMARK 3 T11: 0.3773 T22: 0.3036 REMARK 3 T33: 0.2840 T12: 0.0271 REMARK 3 T13: -0.0785 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 1.3024 L22: 1.5126 REMARK 3 L33: 2.0643 L12: 0.5651 REMARK 3 L13: 0.3008 L23: -0.4040 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: 0.4468 S13: 0.1579 REMARK 3 S21: -0.5968 S22: 0.0298 S23: 0.3777 REMARK 3 S31: -0.1434 S32: -0.1263 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6462 -9.7627 15.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.2402 REMARK 3 T33: 0.2258 T12: 0.0724 REMARK 3 T13: 0.0030 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 0.6562 L22: 1.4534 REMARK 3 L33: 1.9868 L12: -0.0247 REMARK 3 L13: 0.8366 L23: 0.0152 REMARK 3 S TENSOR REMARK 3 S11: 0.0963 S12: 0.2962 S13: -0.3197 REMARK 3 S21: -0.3666 S22: 0.0124 S23: 0.0886 REMARK 3 S31: 0.3344 S32: 0.3098 S33: 0.0445 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.6636 -8.4940 25.7237 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.5201 REMARK 3 T33: 0.3292 T12: 0.1441 REMARK 3 T13: 0.0738 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 0.8146 L22: 2.2730 REMARK 3 L33: 0.4467 L12: 0.8136 REMARK 3 L13: -0.5300 L23: -0.1560 REMARK 3 S TENSOR REMARK 3 S11: 0.1135 S12: 0.1112 S13: -0.1700 REMARK 3 S21: 0.0614 S22: -0.2876 S23: -0.4726 REMARK 3 S31: 0.3866 S32: 0.7296 S33: -0.0775 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0081 12.2570 31.5734 REMARK 3 T TENSOR REMARK 3 T11: 0.3419 T22: 0.3744 REMARK 3 T33: 0.4627 T12: 0.0691 REMARK 3 T13: 0.1092 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.5396 L22: 0.3565 REMARK 3 L33: 0.1327 L12: 0.1233 REMARK 3 L13: -0.0235 L23: -0.1295 REMARK 3 S TENSOR REMARK 3 S11: 0.2290 S12: -0.2769 S13: 0.2956 REMARK 3 S21: 0.4148 S22: -0.0384 S23: 0.5125 REMARK 3 S31: -0.3603 S32: -0.3211 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NAM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1000257688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 42.121 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.397 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.56 REMARK 200 R MERGE FOR SHELL (I) : 1.04500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SOV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.2 M NA MALATE, PH REMARK 280 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.44500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 GLY A 326 REMARK 465 ASN A 327 REMARK 465 SER A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 29.60 -146.39 REMARK 500 ARG A 28 -58.73 62.94 REMARK 500 GLU A 51 -66.33 -104.32 REMARK 500 ALA A 54 -69.82 -123.91 REMARK 500 SER A 85 69.28 -100.98 REMARK 500 SER A 96 75.94 -154.95 REMARK 500 GLU A 107 68.91 61.34 REMARK 500 ASP A 138 -60.70 -137.89 REMARK 500 ARG A 141 -95.18 -144.74 REMARK 500 ASN A 178 15.78 -144.44 REMARK 500 TYR A 182 -56.15 -148.60 REMARK 500 VAL A 219 -60.33 -108.90 REMARK 500 HIS A 226 69.25 -156.61 REMARK 500 GLU A 234 -120.73 57.54 REMARK 500 SER A 267 81.04 -161.68 REMARK 500 MET A 269 -124.39 -129.80 REMARK 500 HIS A 295 -101.27 -123.91 REMARK 500 ASN B 11 -70.14 -122.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 114 O REMARK 620 2 ASN A 117 OD1 85.0 REMARK 620 3 ASP A 138 O 101.4 88.2 REMARK 620 4 HOH A 534 O 170.4 97.6 87.9 REMARK 620 5 HOH A 645 O 94.1 85.0 162.5 77.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 143 O REMARK 620 2 HOH A 536 O 136.0 REMARK 620 3 HOH A 615 O 110.0 114.0 REMARK 620 4 HOH A 670 O 89.6 85.3 97.9 REMARK 620 5 HOH A 673 O 86.0 89.2 95.3 166.8 REMARK 620 N 1 2 3 4 DBREF 7NAM A 20 326 UNP O75581 LRP6_HUMAN 20 326 DBREF 7NAM B 1 32 PDB 7NAM 7NAM 1 32 SEQADV 7NAM GLY A 18 UNP O75581 EXPRESSION TAG SEQADV 7NAM SER A 19 UNP O75581 EXPRESSION TAG SEQADV 7NAM ASN A 327 UNP O75581 EXPRESSION TAG SEQADV 7NAM SER A 328 UNP O75581 EXPRESSION TAG SEQADV 7NAM HIS A 329 UNP O75581 EXPRESSION TAG SEQADV 7NAM HIS A 330 UNP O75581 EXPRESSION TAG SEQADV 7NAM HIS A 331 UNP O75581 EXPRESSION TAG SEQADV 7NAM HIS A 332 UNP O75581 EXPRESSION TAG SEQADV 7NAM HIS A 333 UNP O75581 EXPRESSION TAG SEQADV 7NAM HIS A 334 UNP O75581 EXPRESSION TAG SEQRES 1 A 317 GLY SER ALA PRO LEU LEU LEU TYR ALA ASN ARG ARG ASP SEQRES 2 A 317 LEU ARG LEU VAL ASP ALA THR ASN GLY LYS GLU ASN ALA SEQRES 3 A 317 THR ILE VAL VAL GLY GLY LEU GLU ASP ALA ALA ALA VAL SEQRES 4 A 317 ASP PHE VAL PHE SER HIS GLY LEU ILE TYR TRP SER ASP SEQRES 5 A 317 VAL SER GLU GLU ALA ILE LYS ARG THR GLU PHE ASN LYS SEQRES 6 A 317 THR GLU SER VAL GLN ASN VAL VAL VAL SER GLY LEU LEU SEQRES 7 A 317 SER PRO ASP GLY LEU ALA CYS ASP TRP LEU GLY GLU LYS SEQRES 8 A 317 LEU TYR TRP THR ASP SER GLU THR ASN ARG ILE GLU VAL SEQRES 9 A 317 SER ASN LEU ASP GLY SER LEU ARG LYS VAL LEU PHE TRP SEQRES 10 A 317 GLN GLU LEU ASP GLN PRO ARG ALA ILE ALA LEU ASP PRO SEQRES 11 A 317 SER SER GLY PHE MET TYR TRP THR ASP TRP GLY GLU VAL SEQRES 12 A 317 PRO LYS ILE GLU ARG ALA GLY MET ASP GLY SER SER ARG SEQRES 13 A 317 PHE ILE ILE ILE ASN SER GLU ILE TYR TRP PRO ASN GLY SEQRES 14 A 317 LEU THR LEU ASP TYR GLU GLU GLN LYS LEU TYR TRP ALA SEQRES 15 A 317 ASP ALA LYS LEU ASN PHE ILE HIS LYS SER ASN LEU ASP SEQRES 16 A 317 GLY THR ASN ARG GLN ALA VAL VAL LYS GLY SER LEU PRO SEQRES 17 A 317 HIS PRO PHE ALA LEU THR LEU PHE GLU ASP ILE LEU TYR SEQRES 18 A 317 TRP THR ASP TRP SER THR HIS SER ILE LEU ALA CYS ASN SEQRES 19 A 317 LYS TYR THR GLY GLU GLY LEU ARG GLU ILE HIS SER ASP SEQRES 20 A 317 ILE PHE SER PRO MET ASP ILE HIS ALA PHE SER GLN GLN SEQRES 21 A 317 ARG GLN PRO ASN ALA THR ASN PRO CYS GLY ILE ASP ASN SEQRES 22 A 317 GLY GLY CYS SER HIS LEU CYS LEU MET SER PRO VAL LYS SEQRES 23 A 317 PRO PHE TYR GLN CYS ALA CYS PRO THR GLY VAL LYS LEU SEQRES 24 A 317 LEU GLU ASN GLY LYS THR CYS LYS ASP GLY ASN SER HIS SEQRES 25 A 317 HIS HIS HIS HIS HIS SEQRES 1 B 32 GLY CYS GLN SER ASN HIS ILE LEU LYS HIS ASN ARG CYS SEQRES 2 B 32 LYS GLN ASP SER ASP CYS LEU ALA GLY CYS VAL CYS GLY SEQRES 3 B 32 PRO ASN GLY PHE CYS GLY HET NAG D 1 25 HET NAG D 2 27 HET MAN D 3 22 HET FUC D 4 21 HET FUC D 5 21 HET NAG E 1 25 HET NAG E 2 27 HET MAN E 3 22 HET FUC E 4 21 HET FUC E 5 21 HET NA A 402 1 HET NA A 403 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 MAN 2(C6 H12 O6) FORMUL 3 FUC 4(C6 H12 O5) FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *228(H2 O) HELIX 1 AA1 PHE A 60 HIS A 62 5 3 HELIX 2 AA2 SER A 275 GLN A 279 5 5 HELIX 3 AA3 ASP A 289 CYS A 293 5 5 HELIX 4 AA4 GLN B 15 CYS B 19 5 5 SHEET 1 AA1 7 ASN A 88 SER A 92 0 SHEET 2 AA1 7 ALA A 74 GLU A 79 -1 N ARG A 77 O ASN A 88 SHEET 3 AA1 7 LEU A 64 ASP A 69 -1 N ASP A 69 O ALA A 74 SHEET 4 AA1 7 THR A 44 VAL A 59 -1 N VAL A 59 O LEU A 64 SHEET 5 AA1 7 ARG A 28 ASP A 35 -1 N ARG A 28 O ALA A 53 SHEET 6 AA1 7 LEU A 22 ALA A 26 -1 N LEU A 23 O VAL A 34 SHEET 7 AA1 7 ILE A 271 PHE A 274 -1 O HIS A 272 N LEU A 24 SHEET 1 AA2 4 GLY A 99 ASP A 103 0 SHEET 2 AA2 4 LYS A 108 ASP A 113 -1 O TYR A 110 N ALA A 101 SHEET 3 AA2 4 ARG A 118 ASN A 123 -1 O SER A 122 N LEU A 109 SHEET 4 AA2 4 LYS A 130 PHE A 133 -1 O LYS A 130 N VAL A 121 SHEET 1 AA3 4 PRO A 140 ASP A 146 0 SHEET 2 AA3 4 PHE A 151 ASP A 156 -1 O PHE A 151 N ASP A 146 SHEET 3 AA3 4 LYS A 162 GLY A 167 -1 O ALA A 166 N MET A 152 SHEET 4 AA3 4 PHE A 174 ILE A 177 -1 O PHE A 174 N ARG A 165 SHEET 1 AA4 4 PRO A 184 ASP A 190 0 SHEET 2 AA4 4 LYS A 195 ASP A 200 -1 O LYS A 195 N ASP A 190 SHEET 3 AA4 4 PHE A 205 SER A 209 -1 O SER A 209 N LEU A 196 SHEET 4 AA4 4 GLN A 217 VAL A 220 -1 O GLN A 217 N LYS A 208 SHEET 1 AA5 4 PRO A 227 PHE A 233 0 SHEET 2 AA5 4 ILE A 236 ASP A 241 -1 O TYR A 238 N THR A 231 SHEET 3 AA5 4 SER A 246 ASN A 251 -1 O CYS A 250 N LEU A 237 SHEET 4 AA5 4 ARG A 259 HIS A 262 -1 O HIS A 262 N ILE A 247 SHEET 1 AA6 2 LEU A 296 MET A 299 0 SHEET 2 AA6 2 TYR A 306 ALA A 309 -1 O GLN A 307 N LEU A 298 SHEET 1 AA7 2 VAL B 24 CYS B 25 0 SHEET 2 AA7 2 CYS B 31 GLY B 32 -1 O GLY B 32 N VAL B 24 SSBOND 1 CYS A 286 CYS A 297 1555 1555 2.06 SSBOND 2 CYS A 293 CYS A 308 1555 1555 2.03 SSBOND 3 CYS A 310 CYS A 323 1555 1555 2.04 SSBOND 4 CYS B 2 CYS B 23 1555 1555 2.03 SSBOND 5 CYS B 13 CYS B 25 1555 1555 2.05 SSBOND 6 CYS B 19 CYS B 31 1555 1555 2.05 LINK ND2 ASN A 81 C1 NAG D 1 1555 1555 1.63 LINK ND2 ASN A 281 C1 NAG E 1 1555 1555 1.63 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.49 LINK O3 NAG D 1 C1 FUC D 4 1555 1555 1.38 LINK O6 NAG D 1 C1 FUC D 5 1555 1555 1.42 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.46 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.51 LINK O3 NAG E 1 C1 FUC E 4 1555 1555 1.52 LINK O6 NAG E 1 C1 FUC E 5 1555 1555 1.47 LINK O4 NAG E 2 C1 MAN E 3 1555 1555 1.66 LINK O SER A 114 NA NA A 403 1555 1555 2.31 LINK OD1 ASN A 117 NA NA A 403 1555 1555 2.40 LINK O ASP A 138 NA NA A 403 1555 1555 2.29 LINK O ILE A 143 NA NA A 402 1555 1555 2.32 LINK NA NA A 402 O HOH A 536 1555 1555 2.31 LINK NA NA A 402 O HOH A 615 1555 1555 2.34 LINK NA NA A 402 O HOH A 670 1555 1555 2.34 LINK NA NA A 402 O HOH A 673 1555 1555 2.39 LINK NA NA A 403 O HOH A 534 1555 1555 2.40 LINK NA NA A 403 O HOH A 645 1555 1555 2.55 CISPEP 1 LYS A 303 PRO A 304 0 5.20 CRYST1 108.890 46.940 87.790 90.00 124.34 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009184 0.000000 0.006273 0.00000 SCALE2 0.000000 0.021304 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013795 0.00000