HEADER LYASE 28-JAN-21 7NCC TITLE CRYSTAL STRUCTURE OF FRUCTOSE-BISPHOSPHATE ALDOLASE FBAP FROM BACILLUS TITLE 2 METHANOLICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CLASS II FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS METHANOLICUS (STRAIN MGA3 / ATCC SOURCE 3 53907); SOURCE 4 ORGANISM_TAXID: 796606; SOURCE 5 STRAIN: MGA3 / ATCC 53907; SOURCE 6 GENE: FBA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLUCONEOGENIC ALDOLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EINSLE,L.ZHANG,D.GUETLE,J.P.JACQUOT REVDAT 3 31-JAN-24 7NCC 1 REMARK REVDAT 2 26-MAY-21 7NCC 1 JRNL REVDAT 1 17-FEB-21 7NCC 0 JRNL AUTH K.SCHULTENKAMPER,D.D.GUTLE,M.G.LOPEZ,L.B.KELLER,L.ZHANG, JRNL AUTH 2 O.EINSLE,J.P.JACQUOT,V.F.WENDISCH JRNL TITL INTERROGATING THE ROLE OF THE TWO DISTINCT JRNL TITL 2 FRUCTOSE-BISPHOSPHATE ALDOLASES OF BACILLUS METHANOLICUS BY JRNL TITL 3 SITE-DIRECTED MUTAGENESIS OF KEY AMINO ACIDS AND GENE JRNL TITL 4 REPRESSION BY CRISPR INTERFERENCE JRNL REF FRONT MICROBIOL V. 12 933 2021 JRNL REFN ESSN 1664-302X JRNL DOI 10.3389/FMICB.2021.669220 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 57489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4166 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4270 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.58000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 1.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.204 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.146 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.569 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4397 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4246 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5939 ; 1.945 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9831 ; 1.524 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 6.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;35.142 ;24.330 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 780 ;18.702 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.452 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 577 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4981 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 883 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8642 ; 4.693 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1904 33.2936 23.7288 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.1231 REMARK 3 T33: 0.0230 T12: -0.0858 REMARK 3 T13: -0.0272 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 0.5499 L22: 0.4313 REMARK 3 L33: 1.0437 L12: -0.2924 REMARK 3 L13: 0.1731 L23: -0.5030 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: 0.0883 S13: 0.0077 REMARK 3 S21: 0.0025 S22: -0.0445 S23: -0.0299 REMARK 3 S31: -0.0817 S32: 0.2228 S33: 0.1282 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4055 10.5463 56.9681 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0603 REMARK 3 T33: 0.0166 T12: 0.0492 REMARK 3 T13: 0.0159 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.4381 L22: 0.2808 REMARK 3 L33: 1.3687 L12: 0.2127 REMARK 3 L13: -0.1031 L23: -0.4894 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.0180 S13: 0.0319 REMARK 3 S21: -0.0296 S22: -0.0610 S23: -0.0204 REMARK 3 S31: 0.0867 S32: 0.1692 S33: 0.1127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7NCC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60641 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3Q94 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % PEG 4000, 0.2M IMIDAZOLE/MALATE REMARK 280 BUFFER AT PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.48150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.48150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.79100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.06050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.79100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.06050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.48150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.79100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.06050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.48150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.79100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.06050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 269 O HOH A 401 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 527 O HOH B 527 4556 1.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 91 CD GLU A 91 OE2 0.072 REMARK 500 GLU B 91 CD GLU B 91 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 182 C - N - CA ANGL. DEV. = 12.3 DEGREES REMARK 500 PRO B 112 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 140 CB - CA - C ANGL. DEV. = 12.6 DEGREES REMARK 500 MET B 194 CG - SD - CE ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 86 55.94 39.71 REMARK 500 ASP A 147 -126.33 61.17 REMARK 500 ASN A 232 -71.30 -115.27 REMARK 500 HIS B 86 53.52 39.08 REMARK 500 ASP B 147 -121.75 58.87 REMARK 500 ASN B 232 -71.80 -125.00 REMARK 500 ASP B 250 100.59 -162.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 144 -12.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 555 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 556 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 557 DISTANCE = 6.63 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 304 DBREF 7NCC A 1 284 UNP Q6TV43 Q6TV43_BACMM 1 284 DBREF 7NCC B 1 284 UNP Q6TV43 Q6TV43_BACMM 1 284 SEQRES 1 A 284 MET PRO LEU VAL SER MET LYS ASP MET LEU ASN HIS GLY SEQRES 2 A 284 LYS GLU ASN GLY TYR ALA VAL GLY GLN PHE ASN ILE ASN SEQRES 3 A 284 ASN LEU GLU PHE GLY GLN ALA ILE LEU GLN ALA ALA GLU SEQRES 4 A 284 GLU GLU LYS SER PRO VAL ILE ILE GLY VAL SER VAL GLY SEQRES 5 A 284 ALA ALA ASN TYR MET GLY GLY PHE LYS LEU ILE VAL ASP SEQRES 6 A 284 MET VAL LYS SER SER MET ASP SER TYR ASN VAL THR VAL SEQRES 7 A 284 PRO VAL ALA ILE HIS LEU ASP HIS GLY PRO SER LEU GLU SEQRES 8 A 284 LYS CYS VAL GLN ALA ILE HIS ALA GLY PHE THR SER VAL SEQRES 9 A 284 MET ILE ASP GLY SER HIS LEU PRO LEU GLU GLU ASN ILE SEQRES 10 A 284 GLU LEU THR LYS ARG VAL VAL GLU ILE ALA HIS SER VAL SEQRES 11 A 284 GLY VAL SER VAL GLU ALA GLU LEU GLY ARG ILE GLY GLY SEQRES 12 A 284 GLN GLU ASP ASP VAL VAL ALA GLU SER PHE TYR ALA ILE SEQRES 13 A 284 PRO SER GLU CYS GLU GLN LEU VAL ARG GLU THR GLY VAL SEQRES 14 A 284 ASP CYS PHE ALA PRO ALA LEU GLY SER VAL HIS GLY PRO SEQRES 15 A 284 TYR LYS GLY GLU PRO LYS LEU GLY PHE ASP ARG MET GLU SEQRES 16 A 284 GLU ILE MET LYS LEU THR GLY VAL PRO LEU VAL LEU HIS SEQRES 17 A 284 GLY GLY THR GLY ILE PRO THR LYS ASP ILE GLN LYS ALA SEQRES 18 A 284 ILE SER LEU GLY THR ALA LYS ILE ASN VAL ASN THR GLU SEQRES 19 A 284 SER GLN ILE ALA ALA THR LYS ALA VAL ARG GLU VAL LEU SEQRES 20 A 284 ASN ASN ASP ALA LYS LEU PHE ASP PRO ARG LYS PHE LEU SEQRES 21 A 284 ALA PRO ALA ARG GLU ALA ILE LYS GLU THR ILE LYS GLY SEQRES 22 A 284 LYS MET ARG GLU PHE GLY SER SER GLY LYS ALA SEQRES 1 B 284 MET PRO LEU VAL SER MET LYS ASP MET LEU ASN HIS GLY SEQRES 2 B 284 LYS GLU ASN GLY TYR ALA VAL GLY GLN PHE ASN ILE ASN SEQRES 3 B 284 ASN LEU GLU PHE GLY GLN ALA ILE LEU GLN ALA ALA GLU SEQRES 4 B 284 GLU GLU LYS SER PRO VAL ILE ILE GLY VAL SER VAL GLY SEQRES 5 B 284 ALA ALA ASN TYR MET GLY GLY PHE LYS LEU ILE VAL ASP SEQRES 6 B 284 MET VAL LYS SER SER MET ASP SER TYR ASN VAL THR VAL SEQRES 7 B 284 PRO VAL ALA ILE HIS LEU ASP HIS GLY PRO SER LEU GLU SEQRES 8 B 284 LYS CYS VAL GLN ALA ILE HIS ALA GLY PHE THR SER VAL SEQRES 9 B 284 MET ILE ASP GLY SER HIS LEU PRO LEU GLU GLU ASN ILE SEQRES 10 B 284 GLU LEU THR LYS ARG VAL VAL GLU ILE ALA HIS SER VAL SEQRES 11 B 284 GLY VAL SER VAL GLU ALA GLU LEU GLY ARG ILE GLY GLY SEQRES 12 B 284 GLN GLU ASP ASP VAL VAL ALA GLU SER PHE TYR ALA ILE SEQRES 13 B 284 PRO SER GLU CYS GLU GLN LEU VAL ARG GLU THR GLY VAL SEQRES 14 B 284 ASP CYS PHE ALA PRO ALA LEU GLY SER VAL HIS GLY PRO SEQRES 15 B 284 TYR LYS GLY GLU PRO LYS LEU GLY PHE ASP ARG MET GLU SEQRES 16 B 284 GLU ILE MET LYS LEU THR GLY VAL PRO LEU VAL LEU HIS SEQRES 17 B 284 GLY GLY THR GLY ILE PRO THR LYS ASP ILE GLN LYS ALA SEQRES 18 B 284 ILE SER LEU GLY THR ALA LYS ILE ASN VAL ASN THR GLU SEQRES 19 B 284 SER GLN ILE ALA ALA THR LYS ALA VAL ARG GLU VAL LEU SEQRES 20 B 284 ASN ASN ASP ALA LYS LEU PHE ASP PRO ARG LYS PHE LEU SEQRES 21 B 284 ALA PRO ALA ARG GLU ALA ILE LYS GLU THR ILE LYS GLY SEQRES 22 B 284 LYS MET ARG GLU PHE GLY SER SER GLY LYS ALA HET MLT A 301 9 HET PO4 A 302 5 HET PO4 A 303 5 HET PO4 A 304 5 HET IMD B 301 5 HET PO4 B 302 5 HET PO4 B 303 5 HET PO4 B 304 5 HETNAM MLT D-MALATE HETNAM PO4 PHOSPHATE ION HETNAM IMD IMIDAZOLE HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 3 MLT C4 H6 O5 FORMUL 4 PO4 6(O4 P 3-) FORMUL 7 IMD C3 H5 N2 1+ FORMUL 11 HOH *282(H2 O) HELIX 1 AA1 MET A 6 GLY A 17 1 12 HELIX 2 AA2 ASN A 27 GLU A 41 1 15 HELIX 3 AA3 SER A 50 GLY A 58 1 9 HELIX 4 AA4 GLY A 59 TYR A 74 1 16 HELIX 5 AA5 SER A 89 ALA A 99 1 11 HELIX 6 AA6 PRO A 112 HIS A 128 1 17 HELIX 7 AA7 GLY A 143 ASP A 147 5 5 HELIX 8 AA8 ALA A 150 TYR A 154 5 5 HELIX 9 AA9 ILE A 156 GLY A 168 1 13 HELIX 10 AB1 GLY A 190 GLY A 202 1 13 HELIX 11 AB2 PRO A 214 LEU A 224 1 11 HELIX 12 AB3 ASN A 232 ASP A 250 1 19 HELIX 13 AB4 PRO A 256 PHE A 278 1 23 HELIX 14 AB5 MET B 6 GLY B 17 1 12 HELIX 15 AB6 ASN B 27 GLU B 41 1 15 HELIX 16 AB7 SER B 50 GLY B 58 1 9 HELIX 17 AB8 GLY B 59 TYR B 74 1 16 HELIX 18 AB9 SER B 89 ALA B 99 1 11 HELIX 19 AC1 PRO B 112 HIS B 128 1 17 HELIX 20 AC2 GLU B 145 ASP B 147 5 3 HELIX 21 AC3 ALA B 150 TYR B 154 5 5 HELIX 22 AC4 ILE B 156 GLY B 168 1 13 HELIX 23 AC5 GLY B 190 GLY B 202 1 13 HELIX 24 AC6 PRO B 214 LEU B 224 1 11 HELIX 25 AC7 ASN B 232 ASN B 249 1 18 HELIX 26 AC8 PRO B 256 PHE B 278 1 23 SHEET 1 AA1 9 VAL A 20 ASN A 24 0 SHEET 2 AA1 9 VAL A 45 VAL A 49 1 O ILE A 46 N PHE A 23 SHEET 3 AA1 9 VAL A 80 GLY A 87 1 O ALA A 81 N ILE A 47 SHEET 4 AA1 9 SER A 103 ILE A 106 1 O MET A 105 N GLY A 87 SHEET 5 AA1 9 SER A 133 LEU A 138 1 O SER A 133 N VAL A 104 SHEET 6 AA1 9 CYS A 171 PRO A 174 1 O ALA A 173 N ALA A 136 SHEET 7 AA1 9 LEU A 205 LEU A 207 1 O VAL A 206 N PHE A 172 SHEET 8 AA1 9 THR A 226 VAL A 231 1 O ALA A 227 N LEU A 205 SHEET 9 AA1 9 VAL A 20 ASN A 24 1 N VAL A 20 O ALA A 227 SHEET 1 AA2 9 VAL B 20 ASN B 24 0 SHEET 2 AA2 9 VAL B 45 VAL B 49 1 O ILE B 46 N PHE B 23 SHEET 3 AA2 9 VAL B 80 GLY B 87 1 O ALA B 81 N ILE B 47 SHEET 4 AA2 9 SER B 103 ILE B 106 1 O MET B 105 N LEU B 84 SHEET 5 AA2 9 SER B 133 LEU B 138 1 O SER B 133 N VAL B 104 SHEET 6 AA2 9 CYS B 171 PRO B 174 1 O ALA B 173 N ALA B 136 SHEET 7 AA2 9 LEU B 205 LEU B 207 1 O VAL B 206 N PHE B 172 SHEET 8 AA2 9 THR B 226 VAL B 231 1 O ALA B 227 N LEU B 205 SHEET 9 AA2 9 VAL B 20 ASN B 24 1 N GLN B 22 O VAL B 231 SHEET 1 AA3 2 GLY B 142 GLY B 143 0 SHEET 2 AA3 2 VAL B 179 HIS B 180 1 O HIS B 180 N GLY B 142 SITE 1 AC1 1 PRO A 214 SITE 1 AC2 11 HIS A 180 GLY A 181 GLY A 209 GLY A 210 SITE 2 AC2 11 THR A 211 VAL A 231 ASN A 232 THR A 233 SITE 3 AC2 11 HOH A 406 HOH A 454 HOH A 462 SITE 1 AC3 8 ASN A 24 SER A 50 ASN A 232 GLN A 236 SITE 2 AC3 8 HOH A 410 HOH A 428 HOH A 470 ARG B 257 SITE 1 AC4 5 GLY A 190 PHE A 191 ASP A 192 ARG A 193 SITE 2 AC4 5 HOH A 424 SITE 1 AC5 4 SER B 109 HIS B 110 ARG B 140 HOH B 426 SITE 1 AC6 10 HIS B 180 GLY B 181 GLY B 209 GLY B 210 SITE 2 AC6 10 THR B 211 ASN B 232 THR B 233 HOH B 402 SITE 3 AC6 10 HOH B 420 HOH B 474 SITE 1 AC7 6 GLY B 190 PHE B 191 ASP B 192 ARG B 193 SITE 2 AC7 6 HOH B 410 HOH B 470 SITE 1 AC8 8 ARG A 257 ASN B 24 SER B 50 ASN B 232 SITE 2 AC8 8 GLN B 236 HOH B 406 HOH B 451 HOH B 476 CRYST1 91.582 122.121 160.963 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010919 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006213 0.00000