HEADER LYASE 01-FEB-21 7NDE TITLE TRICHODERMA PARAREESEI PL7A BETA-GLUCURONAN LYASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCURONAN LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRICHODERMA PARAREESEI; SOURCE 3 ORGANISM_TAXID: 858221; SOURCE 4 GENE: A9Z42_0012760; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS GLUCURONAN LYASE, B-JELLY ROLL, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FREDSLUND,D.H.WELNER,C.WILKENS REVDAT 3 14-FEB-24 7NDE 1 JRNL REVDAT 2 31-JAN-24 7NDE 1 REMARK REVDAT 1 02-MAR-22 7NDE 0 JRNL AUTH M.VUILLEMIN,B.PILGAARD,E.KIEHN,F.FREDSLUND,D.H.WELNER, JRNL AUTH 2 A.S.MEYER,F.L.AACHMANN,C.WILKENS JRNL TITL GLUCURONAN LYASES FROM FAMILY PL7 USE A TYR/TYR SYN JRNL TITL 2 BETA-ELIMINATION CATALYTIC MECHANISM FOR GLUCURONAN JRNL TITL 3 BREAKDOWN. JRNL REF CHEM.COMMUN.(CAMB.) V. 60 440 2024 JRNL REFN ESSN 1364-548X JRNL PMID 38087900 JRNL DOI 10.1039/D3CC04256A REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 46430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.270 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5500 - 3.4900 1.00 3646 162 0.1470 0.1573 REMARK 3 2 3.4900 - 2.7700 1.00 3479 154 0.1552 0.1670 REMARK 3 3 2.7700 - 2.4200 1.00 3427 153 0.1521 0.1958 REMARK 3 4 2.4200 - 2.2000 1.00 3388 150 0.1368 0.1756 REMARK 3 5 2.2000 - 2.0400 1.00 3369 150 0.1392 0.1557 REMARK 3 6 2.0400 - 1.9200 0.99 3331 147 0.1407 0.1584 REMARK 3 7 1.9200 - 1.8200 0.98 3280 146 0.1449 0.1522 REMARK 3 8 1.8200 - 1.7500 0.97 3239 146 0.1575 0.1893 REMARK 3 9 1.7500 - 1.6800 0.95 3170 139 0.1784 0.2034 REMARK 3 10 1.6800 - 1.6200 0.92 3066 134 0.1908 0.2169 REMARK 3 11 1.6200 - 1.5700 0.89 2979 131 0.2155 0.2191 REMARK 3 12 1.5700 - 1.5200 0.86 2876 129 0.2416 0.2812 REMARK 3 13 1.5200 - 1.4800 0.82 2703 122 0.2787 0.2735 REMARK 3 14 1.4800 - 1.4500 0.76 2495 119 0.3335 0.3434 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.136 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.481 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1907 REMARK 3 ANGLE : 0.985 2620 REMARK 3 CHIRALITY : 0.082 297 REMARK 3 PLANARITY : 0.007 350 REMARK 3 DIHEDRAL : 16.457 677 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9484 42.9136 61.4796 REMARK 3 T TENSOR REMARK 3 T11: 0.2483 T22: 0.2824 REMARK 3 T33: 0.1998 T12: -0.0293 REMARK 3 T13: -0.0088 T23: 0.0507 REMARK 3 L TENSOR REMARK 3 L11: 7.9683 L22: 0.7675 REMARK 3 L33: 7.5385 L12: -1.2237 REMARK 3 L13: 5.6149 L23: -1.6633 REMARK 3 S TENSOR REMARK 3 S11: 0.0840 S12: -0.4954 S13: 0.0062 REMARK 3 S21: 0.0920 S22: 0.0599 S23: 0.0038 REMARK 3 S31: 0.2030 S32: -0.2304 S33: -0.0936 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8201 35.2307 51.5005 REMARK 3 T TENSOR REMARK 3 T11: 0.2892 T22: 0.2087 REMARK 3 T33: 0.2405 T12: -0.0823 REMARK 3 T13: -0.0469 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 5.6307 L22: 5.0480 REMARK 3 L33: 6.1001 L12: -1.0023 REMARK 3 L13: -1.2199 L23: 0.1222 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: 0.2149 S13: -0.4767 REMARK 3 S21: -0.2399 S22: -0.0203 S23: 0.2742 REMARK 3 S31: 0.5283 S32: -0.4864 S33: -0.0812 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2780 42.6057 45.6677 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.2755 REMARK 3 T33: 0.2072 T12: -0.0199 REMARK 3 T13: -0.0180 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 2.6053 L22: 1.6251 REMARK 3 L33: 0.9723 L12: -0.5225 REMARK 3 L13: -0.2955 L23: -0.2000 REMARK 3 S TENSOR REMARK 3 S11: 0.1162 S12: 0.2366 S13: -0.0674 REMARK 3 S21: -0.1651 S22: -0.0465 S23: 0.0112 REMARK 3 S31: 0.1257 S32: -0.1617 S33: -0.0821 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3726 52.1178 49.8372 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.2512 REMARK 3 T33: 0.1638 T12: -0.0145 REMARK 3 T13: 0.0050 T23: 0.0440 REMARK 3 L TENSOR REMARK 3 L11: 2.9437 L22: 1.3873 REMARK 3 L33: 0.9653 L12: -0.3744 REMARK 3 L13: 0.2854 L23: -0.0913 REMARK 3 S TENSOR REMARK 3 S11: 0.0495 S12: -0.2275 S13: 0.1057 REMARK 3 S21: -0.0004 S22: 0.0172 S23: 0.0565 REMARK 3 S31: 0.0320 S32: -0.1401 S33: -0.0624 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.3636 57.5057 42.1207 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.2383 REMARK 3 T33: 0.1931 T12: -0.0053 REMARK 3 T13: 0.0127 T23: 0.0557 REMARK 3 L TENSOR REMARK 3 L11: 6.4238 L22: 1.7710 REMARK 3 L33: 1.8247 L12: -0.9505 REMARK 3 L13: 2.0945 L23: -0.4953 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.1798 S13: 0.2821 REMARK 3 S21: -0.1043 S22: -0.0044 S23: -0.0097 REMARK 3 S31: -0.0296 S32: -0.0708 S33: -0.0116 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3178 62.1665 48.0124 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.2024 REMARK 3 T33: 0.2484 T12: 0.0005 REMARK 3 T13: -0.0128 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 4.5887 L22: 0.8152 REMARK 3 L33: 1.5119 L12: -0.4507 REMARK 3 L13: 1.4189 L23: -0.6431 REMARK 3 S TENSOR REMARK 3 S11: -0.1670 S12: -0.1549 S13: 0.3519 REMARK 3 S21: 0.0386 S22: 0.0562 S23: -0.0583 REMARK 3 S31: -0.1107 S32: -0.1171 S33: 0.1327 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 222 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4906 48.7086 42.7757 REMARK 3 T TENSOR REMARK 3 T11: 0.2384 T22: 0.2620 REMARK 3 T33: 0.1866 T12: -0.0176 REMARK 3 T13: -0.0086 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 4.1653 L22: 1.8716 REMARK 3 L33: 2.0581 L12: -1.8438 REMARK 3 L13: -1.3519 L23: 0.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.1093 S12: 0.3904 S13: 0.1336 REMARK 3 S21: -0.2448 S22: -0.1129 S23: -0.0902 REMARK 3 S31: 0.0594 S32: -0.0830 S33: -0.0281 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 238 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6464 51.4217 56.6751 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.2653 REMARK 3 T33: 0.1574 T12: -0.0326 REMARK 3 T13: -0.0120 T23: 0.0375 REMARK 3 L TENSOR REMARK 3 L11: 5.7564 L22: 2.6076 REMARK 3 L33: 4.3024 L12: -1.5263 REMARK 3 L13: -1.7915 L23: 0.2705 REMARK 3 S TENSOR REMARK 3 S11: -0.0899 S12: -0.4116 S13: 0.0962 REMARK 3 S21: 0.2415 S22: 0.1143 S23: -0.0133 REMARK 3 S31: 0.0833 S32: -0.1672 S33: -0.0437 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49303 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 43.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2CWS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M DISODIUM MALONATE PH 7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.83000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.79450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.79450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.91500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.79450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.79450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.74500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.79450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.79450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.91500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.79450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.79450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.74500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 581 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 252 REMARK 465 VAL A 253 REMARK 465 ASP A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 405 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 83 114.79 -34.33 REMARK 500 PHE A 215 -128.95 56.99 REMARK 500 THR A 219 59.90 33.31 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7NDE A 21 252 UNP A0A2H2ZFD4_9HYPO DBREF2 7NDE A A0A2H2ZFD4 21 252 SEQADV 7NDE GLU A -1 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE PHE A 0 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE VAL A 253 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE ASP A 254 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE HIS A 255 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE HIS A 256 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE HIS A 257 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE HIS A 258 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE HIS A 259 UNP A0A2H2ZFD EXPRESSION TAG SEQADV 7NDE HIS A 260 UNP A0A2H2ZFD EXPRESSION TAG SEQRES 1 A 242 GLU PHE LEU ASP PRO SER CYS ALA PRO GLY GLY ASN PHE SEQRES 2 A 242 ASP LEU SER VAL TRP SER LEU GLN LEU PRO THR GLY SER SEQRES 3 A 242 ALA GLY LYS VAL ASP THR ILE LYS SER ARG ASP LEU GLN SEQRES 4 A 242 GLY CYS ASN GLY TYR THR GLY PRO THR PHE PHE THR ASP SEQRES 5 A 242 LYS SER ASN GLY GLU LEU ILE LEU THR ALA PRO GLY ASN SEQRES 6 A 242 PRO ASP ILE THR GLY CYS ALA THR THR SER GLY SER GLU SEQRES 7 A 242 HIS CYS ARG THR GLU LEU ARG GLU VAL ASP SER ALA THR SEQRES 8 A 242 GLY GLN ASN THR ASP TRP ALA PRO ALA GLY THR ASN THR SEQRES 9 A 242 LEU THR VAL ALA MET LYS VAL ILE GLN ALA ASP ASP GLY SEQRES 10 A 242 SER HIS GLY THR ALA ILE GLY GLN VAL PHE ALA ALA ALA SEQRES 11 A 242 ALA SER LYS PRO LEU ALA GLU MET TYR TYR SER GLN LYS SEQRES 12 A 242 GLY ASP ILE THR VAL GLY VAL LYS GLN GLY PRO SER GLY SEQRES 13 A 242 ASN GLN ALA ILE THR LYS LEU GLY THR VAL PRO LEU GLY SEQRES 14 A 242 THR TYR PHE THR TYR ILE MET SER TYR SER ASP ASP VAL SEQRES 15 A 242 LEU SER ILE SER ILE ASN GLY ASN LYS THR THR LEU ASP SEQRES 16 A 242 THR PHE SER TRP GLY THR PRO ASN CYS TYR PHE LYS SER SEQRES 17 A 242 GLY ASN TYR ASN GLN GLY LYS THR ALA VAL THR SER GLU SEQRES 18 A 242 VAL HIS ILE GLN SER ILE ALA VAL VAL HIS ASP GLN GLU SEQRES 19 A 242 VAL ASP HIS HIS HIS HIS HIS HIS HET NAG A 301 24 HET EDO A 302 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *186(H2 O) HELIX 1 AA1 ALA A 26 PHE A 31 1 6 HELIX 2 AA2 ASP A 32 SER A 34 5 3 HELIX 3 AA3 LYS A 52 GLN A 57 1 6 HELIX 4 AA4 ASN A 83 GLY A 88 1 6 HELIX 5 AA5 ALA A 148 SER A 150 5 3 SHEET 1 AA1 8 LYS A 47 ILE A 51 0 SHEET 2 AA1 8 TRP A 36 SER A 44 -1 N THR A 42 O ASP A 49 SHEET 3 AA1 8 ARG A 99 GLU A 104 -1 O GLU A 101 N GLN A 39 SHEET 4 AA1 8 CYS A 222 TYR A 229 -1 O SER A 226 N LEU A 102 SHEET 5 AA1 8 THR A 139 ALA A 146 -1 N PHE A 145 O TYR A 223 SHEET 6 AA1 8 LYS A 151 TYR A 158 -1 O MET A 156 N GLY A 142 SHEET 7 AA1 8 ASP A 163 LYS A 169 -1 O GLY A 167 N GLU A 155 SHEET 8 AA1 8 GLN A 176 THR A 183 -1 O LEU A 181 N ILE A 164 SHEET 1 AA2 7 PHE A 67 THR A 69 0 SHEET 2 AA2 7 LEU A 76 ALA A 80 -1 O ILE A 77 N PHE A 68 SHEET 3 AA2 7 SER A 238 ASP A 250 -1 O ILE A 242 N LEU A 76 SHEET 4 AA2 7 THR A 120 GLN A 131 -1 N THR A 120 O ASP A 250 SHEET 5 AA2 7 PHE A 190 SER A 197 -1 O TYR A 192 N VAL A 125 SHEET 6 AA2 7 VAL A 200 ILE A 205 -1 O SER A 202 N SER A 195 SHEET 7 AA2 7 ASN A 208 LEU A 212 -1 O LEU A 212 N LEU A 201 SSBOND 1 CYS A 25 CYS A 59 1555 1555 2.06 SSBOND 2 CYS A 89 CYS A 98 1555 1555 2.01 LINK ND2 ASN A 208 C1 NAG A 301 1555 1555 1.44 CRYST1 69.589 69.589 111.660 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014370 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014370 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008956 0.00000