HEADER RNA BINDING PROTEIN 01-FEB-21 7NDI TITLE CRYSTAL STRUCTURE OF ZC3H12C PIN DOMAIN WITH MG2+ ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE ZC3H12C; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12C; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3H12C, KIAA1726; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDO-RIBONUCLEASE, REGNASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.GARG,U.HEINEMANN REVDAT 3 31-JAN-24 7NDI 1 REMARK REVDAT 2 02-JUN-21 7NDI 1 JRNL REVDAT 1 19-MAY-21 7NDI 0 JRNL AUTH A.GARG,Y.ROSKE,S.YAMADA,T.UEHATA,O.TAKEUCHI,U.HEINEMANN JRNL TITL PIN AND CCCH ZN-FINGER DOMAINS COORDINATE RNA TARGETING IN JRNL TITL 2 ZC3H12 FAMILY ENDORIBONUCLEASES. JRNL REF NUCLEIC ACIDS RES. V. 49 5369 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33950203 JRNL DOI 10.1093/NAR/GKAB316 REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 2096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7670 - 7.0840 0.99 3087 150 0.1655 0.1781 REMARK 3 2 7.0840 - 5.6254 1.00 2957 144 0.1699 0.1756 REMARK 3 3 5.6254 - 4.9151 1.00 2916 142 0.1462 0.1803 REMARK 3 4 4.9151 - 4.4661 1.00 2904 141 0.1339 0.1412 REMARK 3 5 4.4661 - 4.1461 1.00 2874 140 0.1491 0.1692 REMARK 3 6 4.1461 - 3.9018 1.00 2888 140 0.1764 0.1676 REMARK 3 7 3.9018 - 3.7065 1.00 2856 139 0.1989 0.2493 REMARK 3 8 3.7065 - 3.5452 1.00 2885 140 0.2086 0.2557 REMARK 3 9 3.5452 - 3.4087 1.00 2863 139 0.2422 0.2504 REMARK 3 10 3.4087 - 3.2911 1.00 2841 138 0.2586 0.3082 REMARK 3 11 3.2911 - 3.1882 1.00 2832 137 0.2425 0.2871 REMARK 3 12 3.1882 - 3.0971 1.00 2832 138 0.2609 0.3029 REMARK 3 13 3.0971 - 3.0156 1.00 2841 137 0.2802 0.3509 REMARK 3 14 3.0156 - 2.9420 1.00 2843 138 0.3163 0.3226 REMARK 3 15 2.9420 - 2.8752 0.96 2730 133 0.3278 0.3687 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5499 REMARK 3 ANGLE : 0.682 7411 REMARK 3 CHIRALITY : 0.030 787 REMARK 3 PLANARITY : 0.003 972 REMARK 3 DIHEDRAL : 10.200 2108 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 107.1049 85.0175 21.2785 REMARK 3 T TENSOR REMARK 3 T11: 0.6382 T22: 0.2215 REMARK 3 T33: 0.8617 T12: -0.0413 REMARK 3 T13: 0.0405 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.4993 L22: 0.7148 REMARK 3 L33: 0.7879 L12: 0.0841 REMARK 3 L13: 0.2541 L23: 0.3699 REMARK 3 S TENSOR REMARK 3 S11: -0.3044 S12: -0.0664 S13: -0.0635 REMARK 3 S21: 0.0594 S22: 0.2900 S23: 0.0187 REMARK 3 S31: 0.0528 S32: -0.1110 S33: -0.0221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3226 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN C REMARK 3 ATOM PAIRS NUMBER : 3226 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN D REMARK 3 ATOM PAIRS NUMBER : 3226 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45274 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 48.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.770 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LICL, 50 MM MGSO4 AND 8% PEG REMARK 280 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.76967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 171.53933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 171.53933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 85.76967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP D 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 133 CG CD OE1 OE2 REMARK 470 ARG C 188 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 188 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 206 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 423 O HOH C 423 2.15 REMARK 500 O HOH D 405 O HOH D 411 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 271 -114.66 56.77 REMARK 500 GLU B 133 53.95 -106.53 REMARK 500 ASN B 271 -114.95 56.70 REMARK 500 LYS C 206 -4.91 74.30 REMARK 500 ASN C 271 -113.68 56.86 REMARK 500 ASN D 134 -8.41 87.22 REMARK 500 ASN D 271 -114.56 56.56 REMARK 500 LYS D 294 -70.66 -81.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 458 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 459 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A 460 DISTANCE = 10.48 ANGSTROMS REMARK 525 HOH B 456 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH B 457 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH C 442 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH D 445 DISTANCE = 13.50 ANGSTROMS REMARK 525 HOH D 446 DISTANCE = 16.50 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 146 O REMARK 620 2 MET A 147 O 102.5 REMARK 620 3 HIS A 149 O 85.0 107.8 REMARK 620 4 ASN A 151 O 164.7 92.8 89.4 REMARK 620 5 VAL A 154 O 85.5 131.2 120.9 85.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 226 OD1 REMARK 620 2 ASP A 226 OD2 50.1 REMARK 620 3 HOH A 412 O 103.9 78.5 REMARK 620 4 HOH A 414 O 95.4 137.1 88.6 REMARK 620 5 HOH A 420 O 103.9 63.1 93.5 159.4 REMARK 620 6 HOH A 427 O 91.3 100.8 158.5 105.3 67.8 REMARK 620 7 HOH A 455 O 156.8 140.0 99.2 82.1 77.4 67.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 226 OD1 REMARK 620 2 HOH B 402 O 79.6 REMARK 620 3 HOH B 405 O 69.5 59.0 REMARK 620 4 HOH B 407 O 72.4 115.9 57.5 REMARK 620 5 HOH B 453 O 132.3 79.6 62.9 79.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA C 146 O REMARK 620 2 MET C 147 O 102.8 REMARK 620 3 HIS C 149 O 87.8 107.4 REMARK 620 4 ASN C 151 O 167.7 89.4 90.0 REMARK 620 5 VAL C 154 O 86.9 129.0 123.1 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 226 OD1 REMARK 620 2 ASP C 226 OD2 46.9 REMARK 620 3 HOH C 410 O 95.5 63.9 REMARK 620 4 HOH C 411 O 94.3 58.5 83.5 REMARK 620 5 HOH C 412 O 82.7 116.2 91.7 174.1 REMARK 620 6 HOH C 421 O 99.3 121.1 162.3 85.7 99.8 REMARK 620 7 HOH C 438 O 169.4 129.7 75.4 90.0 92.1 90.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA D 146 O REMARK 620 2 MET D 147 O 102.8 REMARK 620 3 HIS D 149 O 89.3 112.0 REMARK 620 4 ASN D 151 O 168.8 87.3 91.3 REMARK 620 5 VAL D 154 O 84.4 125.3 122.4 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 226 OD1 REMARK 620 2 ASP D 226 OD2 47.3 REMARK 620 3 HOH D 402 O 136.3 104.6 REMARK 620 4 HOH D 405 O 60.0 105.0 143.9 REMARK 620 5 HOH D 411 O 67.3 99.0 91.3 64.0 REMARK 620 6 HOH D 426 O 100.5 81.1 107.4 97.3 160.8 REMARK 620 N 1 2 3 4 5 DBREF 7NDI A 131 295 UNP Q5DTV4 ZC12C_MOUSE 242 406 DBREF 7NDI B 131 295 UNP Q5DTV4 ZC12C_MOUSE 242 406 DBREF 7NDI C 131 295 UNP Q5DTV4 ZC12C_MOUSE 242 406 DBREF 7NDI D 131 295 UNP Q5DTV4 ZC12C_MOUSE 242 406 SEQRES 1 A 165 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASP GLY SER SEQRES 2 A 165 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 A 165 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 A 165 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 A 165 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 A 165 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 A 165 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 A 165 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 A 165 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 A 165 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 A 165 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 A 165 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 A 165 SER LEU ASP ASN PHE LEU ARG LYS LYS SEQRES 1 B 165 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASP GLY SER SEQRES 2 B 165 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 B 165 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 B 165 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 B 165 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 B 165 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 B 165 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 B 165 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 B 165 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 B 165 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 B 165 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 B 165 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 B 165 SER LEU ASP ASN PHE LEU ARG LYS LYS SEQRES 1 C 165 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASP GLY SER SEQRES 2 C 165 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 C 165 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 C 165 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 C 165 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 C 165 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 C 165 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 C 165 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 C 165 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 C 165 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 C 165 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 C 165 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 C 165 SER LEU ASP ASN PHE LEU ARG LYS LYS SEQRES 1 D 165 ASP GLY GLU ASN LEU ARG PRO VAL VAL ILE ASP GLY SER SEQRES 2 D 165 ASN VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER SEQRES 3 D 165 CYS ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU SEQRES 4 D 165 ARG GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP SEQRES 5 D 165 ARG LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP SEQRES 6 D 165 GLN GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU SEQRES 7 D 165 VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL SEQRES 8 D 165 VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE SEQRES 9 D 165 GLU SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG SEQRES 10 D 165 ASP LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE SEQRES 11 D 165 ASP GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS SEQRES 12 D 165 PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SEQRES 13 D 165 SER LEU ASP ASN PHE LEU ARG LYS LYS HET MG A 301 1 HET NA A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET MG B 301 1 HET MG C 301 1 HET NA C 302 1 HET EDO C 303 4 HET MG D 301 1 HET NA D 302 1 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MG 4(MG 2+) FORMUL 6 NA 3(NA 1+) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 15 HOH *205(H2 O) HELIX 1 AA1 GLY A 142 HIS A 149 1 8 HELIX 2 AA2 CYS A 157 GLU A 169 1 13 HELIX 3 AA3 TRP A 182 GLU A 185 5 4 HELIX 4 AA4 GLN A 196 GLU A 205 1 10 HELIX 5 AA5 TYR A 224 ASP A 237 1 14 HELIX 6 AA6 TYR A 246 LYS A 253 1 8 HELIX 7 AA7 LYS A 253 ARG A 263 1 11 HELIX 8 AA8 SER A 287 LEU A 292 1 6 HELIX 9 AA9 GLY B 142 HIS B 149 1 8 HELIX 10 AB1 CYS B 157 GLU B 169 1 13 HELIX 11 AB2 TRP B 182 GLU B 185 5 4 HELIX 12 AB3 GLN B 196 GLU B 205 1 10 HELIX 13 AB4 TYR B 224 ASP B 237 1 14 HELIX 14 AB5 TYR B 246 LYS B 253 1 8 HELIX 15 AB6 LYS B 253 ARG B 263 1 11 HELIX 16 AB7 SER B 287 LEU B 292 1 6 HELIX 17 AB8 GLY C 142 HIS C 149 1 8 HELIX 18 AB9 CYS C 157 GLU C 169 1 13 HELIX 19 AC1 TRP C 182 GLU C 185 5 4 HELIX 20 AC2 GLN C 196 GLU C 205 1 10 HELIX 21 AC3 TYR C 224 ASP C 237 1 14 HELIX 22 AC4 TYR C 246 LYS C 253 1 8 HELIX 23 AC5 LYS C 253 ARG C 263 1 11 HELIX 24 AC6 SER C 287 LEU C 292 1 6 HELIX 25 AC7 GLY D 142 HIS D 149 1 8 HELIX 26 AC8 CYS D 157 GLU D 169 1 13 HELIX 27 AC9 TRP D 182 GLU D 185 5 4 HELIX 28 AD1 GLN D 196 GLU D 205 1 10 HELIX 29 AD2 TYR D 224 ASP D 237 1 14 HELIX 30 AD3 TYR D 246 LYS D 253 1 8 HELIX 31 AD4 LYS D 253 ARG D 263 1 11 HELIX 32 AD5 SER D 287 LEU D 292 1 6 SHEET 1 AA1 5 LEU A 208 THR A 211 0 SHEET 2 AA1 5 ILE A 175 PRO A 180 1 N VAL A 177 O VAL A 209 SHEET 3 AA1 5 VAL A 138 ASP A 141 1 N VAL A 138 O THR A 176 SHEET 4 AA1 5 ILE A 239 VAL A 241 1 O ILE A 239 N VAL A 139 SHEET 5 AA1 5 LEU A 264 LEU A 265 1 O LEU A 265 N ILE A 240 SHEET 1 AA2 2 PHE A 155 SER A 156 0 SHEET 2 AA2 2 ILE A 193 THR A 194 1 O THR A 194 N PHE A 155 SHEET 1 AA3 2 SER A 213 VAL A 216 0 SHEET 2 AA3 2 ARG A 219 VAL A 222 -1 O VAL A 221 N ARG A 214 SHEET 1 AA4 2 SER A 268 VAL A 270 0 SHEET 2 AA4 2 LYS A 273 MET A 275 -1 O MET A 275 N SER A 268 SHEET 1 AA5 5 LEU B 208 THR B 211 0 SHEET 2 AA5 5 ILE B 175 PRO B 180 1 N VAL B 177 O VAL B 209 SHEET 3 AA5 5 VAL B 138 ASP B 141 1 N ILE B 140 O THR B 176 SHEET 4 AA5 5 ILE B 239 VAL B 241 1 O VAL B 241 N VAL B 139 SHEET 5 AA5 5 LEU B 264 LEU B 265 1 O LEU B 265 N ILE B 240 SHEET 1 AA6 2 PHE B 155 SER B 156 0 SHEET 2 AA6 2 ILE B 193 THR B 194 1 O THR B 194 N PHE B 155 SHEET 1 AA7 2 SER B 213 VAL B 216 0 SHEET 2 AA7 2 ARG B 219 VAL B 222 -1 O VAL B 221 N ARG B 214 SHEET 1 AA8 2 SER B 268 VAL B 270 0 SHEET 2 AA8 2 LYS B 273 MET B 275 -1 O MET B 275 N SER B 268 SHEET 1 AA9 5 LEU C 208 THR C 211 0 SHEET 2 AA9 5 ILE C 175 PRO C 180 1 N VAL C 177 O VAL C 209 SHEET 3 AA9 5 VAL C 138 ASP C 141 1 N VAL C 138 O THR C 176 SHEET 4 AA9 5 ILE C 239 VAL C 241 1 O ILE C 239 N VAL C 139 SHEET 5 AA9 5 LEU C 264 LEU C 265 1 O LEU C 265 N ILE C 240 SHEET 1 AB1 2 PHE C 155 SER C 156 0 SHEET 2 AB1 2 ILE C 193 THR C 194 1 O THR C 194 N PHE C 155 SHEET 1 AB2 2 SER C 213 VAL C 216 0 SHEET 2 AB2 2 ARG C 219 VAL C 222 -1 O VAL C 221 N ARG C 214 SHEET 1 AB3 2 SER C 268 VAL C 270 0 SHEET 2 AB3 2 LYS C 273 MET C 275 -1 O MET C 275 N SER C 268 SHEET 1 AB4 5 LEU D 208 THR D 211 0 SHEET 2 AB4 5 ILE D 175 PRO D 180 1 N VAL D 177 O VAL D 209 SHEET 3 AB4 5 VAL D 138 ASP D 141 1 N ILE D 140 O THR D 176 SHEET 4 AB4 5 ILE D 239 VAL D 241 1 O ILE D 239 N VAL D 139 SHEET 5 AB4 5 LEU D 264 LEU D 265 1 O LEU D 265 N ILE D 240 SHEET 1 AB5 2 PHE D 155 SER D 156 0 SHEET 2 AB5 2 ILE D 193 THR D 194 1 O THR D 194 N PHE D 155 SHEET 1 AB6 2 SER D 213 VAL D 216 0 SHEET 2 AB6 2 ARG D 219 VAL D 222 -1 O VAL D 221 N ARG D 214 SHEET 1 AB7 2 SER D 268 VAL D 270 0 SHEET 2 AB7 2 LYS D 273 MET D 275 -1 O MET D 275 N SER D 268 LINK O ALA A 146 NA NA A 302 1555 1555 2.40 LINK O MET A 147 NA NA A 302 1555 1555 2.47 LINK O HIS A 149 NA NA A 302 1555 1555 2.41 LINK O ASN A 151 NA NA A 302 1555 1555 2.36 LINK O VAL A 154 NA NA A 302 1555 1555 2.47 LINK OD1 ASP A 226 MG MG A 301 1555 1555 2.15 LINK OD2 ASP A 226 MG MG A 301 1555 1555 2.82 LINK MG MG A 301 O HOH A 412 1555 1555 2.08 LINK MG MG A 301 O HOH A 414 1555 1555 2.04 LINK MG MG A 301 O HOH A 420 1555 1555 2.50 LINK MG MG A 301 O HOH A 427 1555 1555 2.06 LINK MG MG A 301 O HOH A 455 1555 1555 2.33 LINK OD1 ASP B 226 MG MG B 301 1555 1555 2.45 LINK MG MG B 301 O HOH B 402 1555 1555 2.49 LINK MG MG B 301 O HOH B 405 1555 1555 2.86 LINK MG MG B 301 O HOH B 407 1555 1555 2.09 LINK MG MG B 301 O HOH B 453 1555 1555 2.51 LINK O ALA C 146 NA NA C 302 1555 1555 2.39 LINK O MET C 147 NA NA C 302 1555 1555 2.47 LINK O HIS C 149 NA NA C 302 1555 1555 2.38 LINK O ASN C 151 NA NA C 302 1555 1555 2.37 LINK O VAL C 154 NA NA C 302 1555 1555 2.48 LINK OD1 ASP C 226 MG MG C 301 1555 1555 2.32 LINK OD2 ASP C 226 MG MG C 301 1555 1555 2.98 LINK MG MG C 301 O HOH C 410 1555 1555 2.08 LINK MG MG C 301 O HOH C 411 1555 1555 2.22 LINK MG MG C 301 O HOH C 412 1555 1555 2.01 LINK MG MG C 301 O HOH C 421 1555 1555 2.39 LINK MG MG C 301 O HOH C 438 1555 1555 2.64 LINK O ALA D 146 NA NA D 302 1555 1555 2.46 LINK O MET D 147 NA NA D 302 1555 1555 2.43 LINK O HIS D 149 NA NA D 302 1555 1555 2.34 LINK O ASN D 151 NA NA D 302 1555 1555 2.34 LINK O VAL D 154 NA NA D 302 1555 1555 2.42 LINK OD1 ASP D 226 MG MG D 301 1555 1555 2.68 LINK OD2 ASP D 226 MG MG D 301 1555 1555 2.78 LINK MG MG D 301 O HOH D 402 1555 1555 2.23 LINK MG MG D 301 O HOH D 405 1555 1555 2.06 LINK MG MG D 301 O HOH D 411 1555 1555 2.08 LINK MG MG D 301 O HOH D 426 1555 1555 2.11 CRYST1 114.701 114.701 257.309 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008718 0.005034 0.000000 0.00000 SCALE2 0.000000 0.010067 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003886 0.00000