HEADER RNA BINDING PROTEIN 01-FEB-21 7NDJ TITLE CRYSTAL STRUCTURE OF ZC3H12C PIN-CCCH ZN FINGER DOMAIN WITH RNA TITLE 2 HEPTAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE ZC3H12C; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12C; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*UP*UP*AP*UP*UP*AP*U)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3H12C, KIAA1726; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS ENDO-RIBONUCLEASE, RNA BINDING PROTEIN, REGNASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GARG,U.HEINEMANN REVDAT 4 31-JAN-24 7NDJ 1 REMARK REVDAT 3 02-JUN-21 7NDJ 1 JRNL REVDAT 2 26-MAY-21 7NDJ 1 REMARK REVDAT 1 19-MAY-21 7NDJ 0 JRNL AUTH A.GARG,Y.ROSKE,S.YAMADA,T.UEHATA,O.TAKEUCHI,U.HEINEMANN JRNL TITL PIN AND CCCH ZN-FINGER DOMAINS COORDINATE RNA TARGETING IN JRNL TITL 2 ZC3H12 FAMILY ENDORIBONUCLEASES. JRNL REF NUCLEIC ACIDS RES. V. 49 5369 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 33950203 JRNL DOI 10.1093/NAR/GKAB316 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 53833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.7230 - 4.0653 0.99 3497 141 0.1426 0.1530 REMARK 3 2 4.0653 - 3.2271 1.00 3486 142 0.1454 0.2111 REMARK 3 3 3.2271 - 2.8192 1.00 3472 140 0.1693 0.1906 REMARK 3 4 2.8192 - 2.5615 0.99 3423 139 0.1739 0.1928 REMARK 3 5 2.5615 - 2.3779 1.00 3474 141 0.1716 0.2118 REMARK 3 6 2.3779 - 2.2377 1.00 3447 140 0.1716 0.2253 REMARK 3 7 2.2377 - 2.1256 1.00 3451 140 0.1746 0.1986 REMARK 3 8 2.1256 - 2.0331 1.00 3458 140 0.1858 0.2185 REMARK 3 9 2.0331 - 1.9548 1.00 3450 140 0.2108 0.2581 REMARK 3 10 1.9548 - 1.8874 0.99 3449 139 0.2219 0.2515 REMARK 3 11 1.8874 - 1.8284 0.99 3431 140 0.2316 0.2747 REMARK 3 12 1.8284 - 1.7761 0.99 3447 139 0.2424 0.2711 REMARK 3 13 1.7761 - 1.7293 1.00 3424 139 0.2741 0.3043 REMARK 3 14 1.7293 - 1.6872 0.99 3436 139 0.2910 0.3582 REMARK 3 15 1.6872 - 1.6490 0.98 3391 138 0.3312 0.3223 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.2749 5.2984 124.9211 REMARK 3 T TENSOR REMARK 3 T11: 0.2847 T22: 0.1325 REMARK 3 T33: 0.1684 T12: 0.0197 REMARK 3 T13: -0.0035 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.1399 L22: 2.2770 REMARK 3 L33: 4.3269 L12: -0.4857 REMARK 3 L13: 0.4207 L23: -0.1182 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.0854 S13: 0.2387 REMARK 3 S21: -0.0439 S22: -0.0877 S23: 0.0325 REMARK 3 S31: -0.7204 S32: -0.1910 S33: 0.0334 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.0149 -4.6428 115.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.1854 REMARK 3 T33: 0.1715 T12: 0.0253 REMARK 3 T13: 0.0355 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.2880 L22: 0.8777 REMARK 3 L33: 3.5522 L12: -0.4337 REMARK 3 L13: 3.3766 L23: -0.5621 REMARK 3 S TENSOR REMARK 3 S11: 0.0898 S12: -0.1584 S13: -0.2472 REMARK 3 S21: 0.0374 S22: 0.0579 S23: 0.1297 REMARK 3 S31: 0.0466 S32: -0.0905 S33: -0.1352 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.9778 -7.5211 132.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.1541 T22: 0.1996 REMARK 3 T33: 0.1901 T12: 0.0078 REMARK 3 T13: -0.0117 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.3479 L22: 2.9542 REMARK 3 L33: 3.5976 L12: -0.5533 REMARK 3 L13: -0.0578 L23: 0.8700 REMARK 3 S TENSOR REMARK 3 S11: -0.0165 S12: -0.0222 S13: -0.0949 REMARK 3 S21: 0.0721 S22: 0.0095 S23: -0.1520 REMARK 3 S31: 0.0429 S32: 0.3270 S33: -0.0036 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.5045 -34.0494 118.8056 REMARK 3 T TENSOR REMARK 3 T11: 0.2522 T22: 0.1421 REMARK 3 T33: 0.1873 T12: 0.0584 REMARK 3 T13: -0.0227 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.6860 L22: 4.1850 REMARK 3 L33: 4.5036 L12: -0.0320 REMARK 3 L13: 0.3299 L23: 0.1773 REMARK 3 S TENSOR REMARK 3 S11: 0.2142 S12: 0.0201 S13: -0.2467 REMARK 3 S21: 0.0023 S22: -0.0716 S23: -0.0561 REMARK 3 S31: 0.7631 S32: 0.3190 S33: -0.0599 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.9808 -29.6718 124.9981 REMARK 3 T TENSOR REMARK 3 T11: 0.2089 T22: 0.1960 REMARK 3 T33: 0.2066 T12: -0.0509 REMARK 3 T13: 0.0166 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.1229 L22: 2.4160 REMARK 3 L33: 4.0878 L12: -0.9434 REMARK 3 L13: -0.0407 L23: -0.8901 REMARK 3 S TENSOR REMARK 3 S11: 0.0996 S12: -0.0847 S13: -0.0813 REMARK 3 S21: 0.0704 S22: 0.0719 S23: 0.3425 REMARK 3 S31: 0.4665 S32: -0.4988 S33: -0.1926 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 247 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 83.3969 -18.0922 118.0763 REMARK 3 T TENSOR REMARK 3 T11: 0.2008 T22: 0.2652 REMARK 3 T33: 0.2860 T12: 0.1012 REMARK 3 T13: 0.0231 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 5.0348 L22: 5.3354 REMARK 3 L33: 5.2044 L12: 2.0518 REMARK 3 L13: -1.8850 L23: 2.2165 REMARK 3 S TENSOR REMARK 3 S11: 0.2277 S12: -0.1337 S13: 0.2910 REMARK 3 S21: -0.1049 S22: -0.2675 S23: 0.4967 REMARK 3 S31: -0.3617 S32: -0.5849 S33: 0.0253 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.0766 -18.2752 108.6034 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.2050 REMARK 3 T33: 0.2209 T12: 0.0394 REMARK 3 T13: 0.0820 T23: 0.0447 REMARK 3 L TENSOR REMARK 3 L11: 2.1775 L22: 7.8046 REMARK 3 L33: 2.4843 L12: 0.8555 REMARK 3 L13: 0.8835 L23: 0.8180 REMARK 3 S TENSOR REMARK 3 S11: 0.2173 S12: 0.2438 S13: 0.3907 REMARK 3 S21: -0.2335 S22: -0.2058 S23: -0.0461 REMARK 3 S31: -0.3457 S32: 0.1475 S33: 0.0343 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.0405 12.5738 105.1933 REMARK 3 T TENSOR REMARK 3 T11: 0.8503 T22: 0.4857 REMARK 3 T33: 0.4551 T12: 0.2387 REMARK 3 T13: 0.0337 T23: 0.1404 REMARK 3 L TENSOR REMARK 3 L11: 4.9030 L22: 4.0065 REMARK 3 L33: 1.9096 L12: -2.5486 REMARK 3 L13: -0.6226 L23: 1.0091 REMARK 3 S TENSOR REMARK 3 S11: 0.1258 S12: -0.4757 S13: -0.7201 REMARK 3 S21: 0.1091 S22: -0.4719 S23: -0.2062 REMARK 3 S31: 1.9519 S32: 1.0981 S33: 0.2347 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 113.4458 13.7292 106.8168 REMARK 3 T TENSOR REMARK 3 T11: 0.7238 T22: 0.4340 REMARK 3 T33: 0.6945 T12: 0.1547 REMARK 3 T13: -0.0145 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.1209 L22: 0.1439 REMARK 3 L33: 0.0357 L12: -0.5364 REMARK 3 L13: -0.2486 L23: 0.0647 REMARK 3 S TENSOR REMARK 3 S11: -0.2059 S12: -0.3205 S13: 1.2321 REMARK 3 S21: 0.0730 S22: 0.3352 S23: 0.4308 REMARK 3 S31: -1.1333 S32: -0.6897 S33: -0.0441 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.649 REMARK 200 RESOLUTION RANGE LOW (A) : 44.723 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7NDI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3350 AND 0.2 M NAF PH 6.9, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.27200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.63600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.90800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 298 REMARK 465 PRO A 299 REMARK 465 GLU A 300 REMARK 465 HIS A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 GLN A 304 REMARK 465 PRO A 305 REMARK 465 CYS A 306 REMARK 465 PRO A 307 REMARK 465 TYR A 308 REMARK 465 GLY A 309 REMARK 465 LYS A 310 REMARK 465 LYS A 311 REMARK 465 CYS A 312 REMARK 465 THR A 313 REMARK 465 TYR A 314 REMARK 465 GLY A 315 REMARK 465 HIS A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 LYS A 319 REMARK 465 TYR A 320 REMARK 465 TYR A 321 REMARK 465 HIS A 322 REMARK 465 PRO A 323 REMARK 465 U C 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 PRO A 296 CG CD REMARK 470 ILE A 297 CG1 CG2 CD1 REMARK 470 GLN B 186 CG CD OE1 NE2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 LYS B 201 CG CD CE NZ REMARK 470 GLN B 217 CG CD OE1 NE2 REMARK 470 ARG B 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 283 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 295 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 242 138.62 -174.32 REMARK 500 ASN A 271 -119.20 57.42 REMARK 500 ALA B 191 64.79 -151.72 REMARK 500 SER B 242 136.00 -173.87 REMARK 500 ASN B 271 -118.24 57.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 684 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 685 DISTANCE = 8.32 ANGSTROMS REMARK 525 HOH B 686 DISTANCE = 8.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 146 O REMARK 620 2 MET A 147 O 85.6 REMARK 620 3 HIS A 149 O 85.5 102.3 REMARK 620 4 ASN A 151 O 172.6 99.1 98.9 REMARK 620 5 VAL A 154 O 80.2 117.0 136.6 92.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 407 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 146 O REMARK 620 2 MET B 147 O 86.0 REMARK 620 3 HIS B 149 O 89.2 105.7 REMARK 620 4 ASN B 151 O 171.4 99.1 96.0 REMARK 620 5 VAL B 154 O 81.2 114.5 137.7 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 306 SG REMARK 620 2 CYS B 312 SG 114.7 REMARK 620 3 CYS B 318 SG 113.5 111.5 REMARK 620 4 HIS B 322 NE2 96.9 110.9 108.2 REMARK 620 N 1 2 3 DBREF 7NDJ A 132 323 UNP Q5DTV4 ZC12C_MOUSE 243 434 DBREF 7NDJ B 132 323 UNP Q5DTV4 ZC12C_MOUSE 243 434 DBREF 7NDJ C 1 7 PDB 7NDJ 7NDJ 1 7 SEQADV 7NDJ ASN A 141 UNP Q5DTV4 ASP 252 CONFLICT SEQADV 7NDJ ASN B 141 UNP Q5DTV4 ASP 252 CONFLICT SEQRES 1 A 192 GLY GLU ASN LEU ARG PRO VAL VAL ILE ASN GLY SER ASN SEQRES 2 A 192 VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER CYS SEQRES 3 A 192 ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU ARG SEQRES 4 A 192 GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP ARG SEQRES 5 A 192 LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP GLN SEQRES 6 A 192 GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU VAL SEQRES 7 A 192 PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL VAL SEQRES 8 A 192 CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE GLU SEQRES 9 A 192 SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG ASP SEQRES 10 A 192 LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE ASP SEQRES 11 A 192 GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS PHE SEQRES 12 A 192 MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SER SEQRES 13 A 192 LEU ASP ASN PHE LEU ARG LYS LYS PRO ILE VAL PRO GLU SEQRES 14 A 192 HIS LYS LYS GLN PRO CYS PRO TYR GLY LYS LYS CYS THR SEQRES 15 A 192 TYR GLY HIS LYS CYS LYS TYR TYR HIS PRO SEQRES 1 B 192 GLY GLU ASN LEU ARG PRO VAL VAL ILE ASN GLY SER ASN SEQRES 2 B 192 VAL ALA MET SER HIS GLY ASN LYS GLU VAL PHE SER CYS SEQRES 3 B 192 ARG GLY ILE LYS LEU ALA VAL ASP TRP PHE LEU GLU ARG SEQRES 4 B 192 GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA TRP ARG SEQRES 5 B 192 LYS GLU GLN SER ARG PRO ASP ALA LEU ILE THR ASP GLN SEQRES 6 B 192 GLU ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE LEU VAL SEQRES 7 B 192 PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG VAL VAL SEQRES 8 B 192 CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA PHE GLU SEQRES 9 B 192 SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR ARG ASP SEQRES 10 B 192 LEU ALA ASN GLU LYS PRO GLU TRP LYS LYS PHE ILE ASP SEQRES 11 B 192 GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP LYS PHE SEQRES 12 B 192 MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY PRO SER SEQRES 13 B 192 LEU ASP ASN PHE LEU ARG LYS LYS PRO ILE VAL PRO GLU SEQRES 14 B 192 HIS LYS LYS GLN PRO CYS PRO TYR GLY LYS LYS CYS THR SEQRES 15 B 192 TYR GLY HIS LYS CYS LYS TYR TYR HIS PRO SEQRES 1 C 7 U U A U U A U HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET NA A 404 1 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET ZN B 406 1 HET NA B 407 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM ZN ZINC ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 8(C2 H6 O2) FORMUL 7 NA 2(NA 1+) FORMUL 13 ZN ZN 2+ FORMUL 15 HOH *376(H2 O) HELIX 1 AA1 GLY A 142 HIS A 149 1 8 HELIX 2 AA2 CYS A 157 ARG A 170 1 14 HELIX 3 AA3 TRP A 182 GLU A 185 5 4 HELIX 4 AA4 GLN A 196 GLU A 205 1 10 HELIX 5 AA5 TYR A 224 SER A 236 1 13 HELIX 6 AA6 TYR A 246 LYS A 253 1 8 HELIX 7 AA7 LYS A 253 ARG A 263 1 11 HELIX 8 AA8 SER A 287 LEU A 292 1 6 HELIX 9 AA9 GLY B 142 HIS B 149 1 8 HELIX 10 AB1 CYS B 157 ARG B 170 1 14 HELIX 11 AB2 TRP B 182 GLU B 185 5 4 HELIX 12 AB3 GLN B 196 GLU B 205 1 10 HELIX 13 AB4 TYR B 224 SER B 236 1 13 HELIX 14 AB5 TYR B 246 LYS B 253 1 8 HELIX 15 AB6 LYS B 253 ARG B 263 1 11 HELIX 16 AB7 SER B 287 LEU B 292 1 6 HELIX 17 AB8 GLU B 300 GLN B 304 5 5 HELIX 18 AB9 TYR B 308 CYS B 312 5 5 HELIX 19 AC1 TYR B 314 CYS B 318 5 5 SHEET 1 AA1 5 LEU A 208 THR A 211 0 SHEET 2 AA1 5 ILE A 175 PRO A 180 1 N VAL A 177 O VAL A 209 SHEET 3 AA1 5 VAL A 138 ASN A 141 1 N ILE A 140 O THR A 176 SHEET 4 AA1 5 ILE A 239 VAL A 241 1 O VAL A 241 N VAL A 139 SHEET 5 AA1 5 LEU A 264 LEU A 265 1 O LEU A 265 N ILE A 240 SHEET 1 AA2 2 PHE A 155 SER A 156 0 SHEET 2 AA2 2 ILE A 193 THR A 194 1 O THR A 194 N PHE A 155 SHEET 1 AA3 2 SER A 213 VAL A 216 0 SHEET 2 AA3 2 ARG A 219 VAL A 222 -1 O VAL A 221 N ARG A 214 SHEET 1 AA4 2 SER A 268 VAL A 270 0 SHEET 2 AA4 2 LYS A 273 MET A 275 -1 O MET A 275 N SER A 268 SHEET 1 AA5 5 LEU B 208 THR B 211 0 SHEET 2 AA5 5 ILE B 175 PRO B 180 1 N VAL B 177 O VAL B 209 SHEET 3 AA5 5 VAL B 138 ASN B 141 1 N ILE B 140 O THR B 176 SHEET 4 AA5 5 ILE B 239 VAL B 241 1 O VAL B 241 N VAL B 139 SHEET 5 AA5 5 LEU B 264 LEU B 265 1 O LEU B 265 N ILE B 240 SHEET 1 AA6 2 PHE B 155 SER B 156 0 SHEET 2 AA6 2 ILE B 193 THR B 194 1 O THR B 194 N PHE B 155 SHEET 1 AA7 2 SER B 213 VAL B 216 0 SHEET 2 AA7 2 ARG B 219 VAL B 222 -1 O VAL B 221 N ARG B 214 SHEET 1 AA8 2 SER B 268 VAL B 270 0 SHEET 2 AA8 2 LYS B 273 MET B 275 -1 O MET B 275 N SER B 268 LINK O ALA A 146 NA NA A 404 1555 1555 2.66 LINK O MET A 147 NA NA A 404 1555 1555 2.40 LINK O HIS A 149 NA NA A 404 1555 1555 2.25 LINK O ASN A 151 NA NA A 404 1555 1555 2.33 LINK O VAL A 154 NA NA A 404 1555 1555 2.23 LINK O ALA B 146 NA NA B 407 1555 1555 2.65 LINK O MET B 147 NA NA B 407 1555 1555 2.45 LINK O HIS B 149 NA NA B 407 1555 1555 2.16 LINK O ASN B 151 NA NA B 407 1555 1555 2.40 LINK O VAL B 154 NA NA B 407 1555 1555 2.35 LINK SG CYS B 306 ZN ZN B 406 1555 1555 2.37 LINK SG CYS B 312 ZN ZN B 406 1555 1555 2.34 LINK SG CYS B 318 ZN ZN B 406 1555 1555 2.26 LINK NE2 HIS B 322 ZN ZN B 406 1555 1555 1.98 CRYST1 63.248 63.248 114.544 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008730 0.00000