HEADER CHAPERONE 02-FEB-21 7NDX TITLE CRYSTAL STRUCTURE OF THE HUMAN HSP40 DNAJB1-CTDS IN COMPLEX WITH A TITLE 2 PEPTIDE OF NUDC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY B MEMBER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNAJ PROTEIN HOMOLOG 1,HEAT SHOCK 40 KDA PROTEIN 1,HEAT COMPND 5 SHOCK PROTEIN 40,HUMAN DNAJ PROTEIN 1,HDJ-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR MIGRATION PROTEIN NUDC; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NUCLEAR DISTRIBUTION PROTEIN C HOMOLOG; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNAJB1, DNAJ1, HDJ1, HSPF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NUDC; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHAPERONES, PROTEIN COMPLEX, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR F.DELHOMMEL,K.M.ZAK,G.M.POPOWICZ,M.SATTLER REVDAT 4 31-JAN-24 7NDX 1 REMARK REVDAT 3 16-FEB-22 7NDX 1 JRNL REVDAT 2 09-FEB-22 7NDX 1 JRNL REVDAT 1 19-JAN-22 7NDX 0 JRNL AUTH M.M.BIEBL,F.DELHOMMEL,O.FAUST,K.M.ZAK,G.AGAM,X.GUO, JRNL AUTH 2 M.MUHLHOFER,V.DAHIYA,D.HILLEBRAND,G.M.POPOWICZ,M.KAMPMANN, JRNL AUTH 3 D.C.LAMB,R.ROSENZWEIG,M.SATTLER,J.BUCHNER JRNL TITL NUDC GUIDES CLIENT TRANSFER BETWEEN THE HSP40/70 AND HSP90 JRNL TITL 2 CHAPERONE SYSTEMS. JRNL REF MOL.CELL V. 82 555 2022 JRNL REFN ISSN 1097-2765 JRNL PMID 35063133 JRNL DOI 10.1016/J.MOLCEL.2021.12.031 REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.937 REMARK 3 FREE R VALUE TEST SET COUNT : 607 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 841 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1430 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.91400 REMARK 3 B22 (A**2) : 2.60700 REMARK 3 B33 (A**2) : 1.30700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.302 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.166 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1466 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1481 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1971 ; 1.799 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3429 ; 1.154 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 8.467 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;30.139 ;21.549 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 276 ;18.674 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.374 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 201 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1560 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 288 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 242 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 62 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 657 ; 0.158 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 31 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 720 ; 2.247 ; 4.259 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 719 ; 2.243 ; 4.259 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 893 ; 3.570 ; 6.377 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 894 ; 3.568 ; 6.379 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 746 ; 2.400 ; 4.533 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 747 ; 2.399 ; 4.534 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 3.895 ; 6.672 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1078 ; 3.895 ; 6.672 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 340 REMARK 3 RESIDUE RANGE : A 401 A 404 REMARK 3 RESIDUE RANGE : A 501 A 519 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5975 18.7858 14.8280 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.1314 REMARK 3 T33: 0.0919 T12: 0.0519 REMARK 3 T13: 0.0245 T23: 0.1072 REMARK 3 L TENSOR REMARK 3 L11: 3.0625 L22: 4.1837 REMARK 3 L33: 3.2027 L12: 1.7890 REMARK 3 L13: -1.5069 L23: -2.2866 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.5161 S13: -0.4164 REMARK 3 S21: 0.0668 S22: 0.0577 S23: 0.0884 REMARK 3 S31: 0.4649 S32: 0.1673 S33: 0.0460 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0963 -4.2370 26.5460 REMARK 3 T TENSOR REMARK 3 T11: 0.5686 T22: 0.4470 REMARK 3 T33: 0.4114 T12: -0.0387 REMARK 3 T13: 0.0421 T23: 0.3052 REMARK 3 L TENSOR REMARK 3 L11: 3.9297 L22: 3.0775 REMARK 3 L33: 3.5610 L12: 0.8782 REMARK 3 L13: -2.4404 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.1117 S12: 0.3796 S13: -0.2016 REMARK 3 S21: -0.1647 S22: -0.0030 S23: -0.0659 REMARK 3 S31: 0.3196 S32: -0.5832 S33: 0.1147 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7NDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12295 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 46.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3AGY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M OF SODIUM ACETATE TRIHYDRATE AND REMARK 280 15% (V/V) OF POLYETHYLENE GLYCOL 400, PH 4.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.60650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.13200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.60650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.13200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 20.65000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.13200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.60650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.13200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 20.65000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 67.60650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 20.65000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 157 REMARK 465 LYS A 158 REMARK 465 LYS A 159 REMARK 465 GLN A 160 REMARK 465 ASP A 161 REMARK 465 PRO A 162 REMARK 465 LYS A 188 REMARK 465 ARG A 189 REMARK 465 LEU A 190 REMARK 465 ASN A 191 REMARK 465 PRO A 192 REMARK 465 ASP A 193 REMARK 465 GLY A 194 REMARK 465 LYS A 195 REMARK 465 SER A 196 REMARK 465 ILE A 197 REMARK 465 ARG A 198 REMARK 465 LYS A 222 REMARK 465 GLU A 223 REMARK 465 GLY A 224 REMARK 465 ASP A 225 REMARK 465 GLN A 226 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 ASN A 229 REMARK 465 ASN A 230 REMARK 465 ILE A 231 REMARK 465 PRO A 232 REMARK 465 ALA A 233 REMARK 465 ASP A 234 REMARK 465 SER B 100 REMARK 465 GLY B 101 REMARK 465 GLU B 129 REMARK 465 ALA B 130 REMARK 465 GLN B 131 REMARK 465 LEU B 132 REMARK 465 LYS B 133 REMARK 465 ASN B 134 REMARK 465 GLY B 135 REMARK 465 SER B 136 REMARK 465 LEU B 137 REMARK 465 ASP B 138 REMARK 465 SER B 139 REMARK 465 PRO B 140 REMARK 465 GLY B 141 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 121 CG CD OE1 NE2 REMARK 470 LYS B 122 CG CD CE NZ REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 ASN B 127 CG OD1 ND2 REMARK 470 HIS B 128 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 216 123.91 -37.53 REMARK 500 GLN B 121 14.70 -66.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 7NDX A 157 340 UNP P25685 DNJB1_HUMAN 157 340 DBREF 7NDX B 100 141 UNP Q9Y266 NUDC_HUMAN 100 141 SEQRES 1 A 184 ARG LYS LYS GLN ASP PRO PRO VAL THR HIS ASP LEU ARG SEQRES 2 A 184 VAL SER LEU GLU GLU ILE TYR SER GLY CYS THR LYS LYS SEQRES 3 A 184 MET LYS ILE SER HIS LYS ARG LEU ASN PRO ASP GLY LYS SEQRES 4 A 184 SER ILE ARG ASN GLU ASP LYS ILE LEU THR ILE GLU VAL SEQRES 5 A 184 LYS LYS GLY TRP LYS GLU GLY THR LYS ILE THR PHE PRO SEQRES 6 A 184 LYS GLU GLY ASP GLN THR SER ASN ASN ILE PRO ALA ASP SEQRES 7 A 184 ILE VAL PHE VAL LEU LYS ASP LYS PRO HIS ASN ILE PHE SEQRES 8 A 184 LYS ARG ASP GLY SER ASP VAL ILE TYR PRO ALA ARG ILE SEQRES 9 A 184 SER LEU ARG GLU ALA LEU CYS GLY CYS THR VAL ASN VAL SEQRES 10 A 184 PRO THR LEU ASP GLY ARG THR ILE PRO VAL VAL PHE LYS SEQRES 11 A 184 ASP VAL ILE ARG PRO GLY MET ARG ARG LYS VAL PRO GLY SEQRES 12 A 184 GLU GLY LEU PRO LEU PRO LYS THR PRO GLU LYS ARG GLY SEQRES 13 A 184 ASP LEU ILE ILE GLU PHE GLU VAL ILE PHE PRO GLU ARG SEQRES 14 A 184 ILE PRO GLN THR SER ARG THR VAL LEU GLU GLN VAL LEU SEQRES 15 A 184 PRO ILE SEQRES 1 B 42 SER GLY PRO GLN ILE LYS GLU LEU THR ASP GLU GLU ALA SEQRES 2 B 42 GLU ARG LEU GLN LEU GLU ILE ASP GLN LYS LYS ASP ALA SEQRES 3 B 42 GLU ASN HIS GLU ALA GLN LEU LYS ASN GLY SER LEU ASP SEQRES 4 B 42 SER PRO GLY HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *22(H2 O) HELIX 1 AA1 SER A 171 GLY A 178 1 8 HELIX 2 AA2 LEU A 262 GLY A 268 1 7 HELIX 3 AA3 PRO A 327 LEU A 338 1 12 HELIX 4 AA4 THR B 108 ASP B 124 1 17 HELIX 5 AA5 ALA B 125 HIS B 128 5 4 SHEET 1 AA1 3 THR A 165 VAL A 170 0 SHEET 2 AA1 3 VAL A 236 ASP A 241 1 O LYS A 240 N VAL A 170 SHEET 3 AA1 3 LYS A 217 THR A 219 -1 N ILE A 218 O PHE A 237 SHEET 1 AA2 3 ILE A 203 VAL A 208 0 SHEET 2 AA2 3 CYS A 179 LYS A 184 -1 N MET A 183 O LEU A 204 SHEET 3 AA2 3 LYS B 105 LEU B 107 -1 O LYS B 105 N LYS A 184 SHEET 1 AA3 4 LYS A 248 ASP A 250 0 SHEET 2 AA3 4 ASP A 253 SER A 261 -1 O ILE A 255 N LYS A 248 SHEET 3 AA3 4 LEU A 314 ILE A 321 1 O GLU A 319 N ALA A 258 SHEET 4 AA3 4 ARG A 294 VAL A 297 -1 N VAL A 297 O LEU A 314 SHEET 1 AA4 2 CYS A 269 PRO A 274 0 SHEET 2 AA4 2 THR A 280 PHE A 285 -1 O ILE A 281 N VAL A 273 SHEET 1 AA5 2 PRO A 303 LEU A 304 0 SHEET 2 AA5 2 THR A 307 ARG A 311 -1 O LYS A 310 N LEU A 304 CRYST1 41.300 128.264 135.213 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024213 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007396 0.00000