HEADER VIRAL PROTEIN 08-FEB-21 7NG3 TITLE CRYSTAL STRUCTURE OF MG-132 COVALENTLY BOUND TO THE MAIN PROTEASE TITLE 2 (3CLPRO/MPRO) OF SARS-COV-2 IN SPACEGROUP P1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN, MG-132 EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,B.GIABBAI,P.STORICI REVDAT 3 31-JAN-24 7NG3 1 REMARK REVDAT 2 24-NOV-21 7NG3 1 COMPND SOURCE JRNL REVDAT 1 07-APR-21 7NG3 0 JRNL AUTH E.COSTANZI,M.KUZIKOV,F.ESPOSITO,S.ALBANI,N.DEMITRI, JRNL AUTH 2 B.GIABBAI,M.CAMASTA,E.TRAMONTANO,G.ROSSETTI,A.ZALIANI, JRNL AUTH 3 P.STORICI JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL INHIBITION JRNL TITL 2 OF MG-132 AGAINST SARS-COV-2 MAIN PROTEASE (MPRO/3CLPRO) AND JRNL TITL 3 HUMAN CATHEPSIN-L. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34769210 JRNL DOI 10.3390/IJMS222111779 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 47474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7100 - 4.6400 0.97 2649 140 0.1690 0.1888 REMARK 3 2 4.6400 - 3.6800 0.97 2673 139 0.1412 0.1702 REMARK 3 3 3.6800 - 3.2200 0.97 2660 148 0.1573 0.2062 REMARK 3 4 3.2200 - 2.9200 0.98 2662 168 0.1787 0.1962 REMARK 3 5 2.9200 - 2.7100 0.97 2685 125 0.1842 0.2195 REMARK 3 6 2.7100 - 2.5500 0.97 2674 138 0.1886 0.2200 REMARK 3 7 2.5500 - 2.4200 0.97 2685 168 0.1843 0.2374 REMARK 3 8 2.4200 - 2.3200 0.98 2665 151 0.1816 0.2455 REMARK 3 9 2.3200 - 2.2300 0.97 2632 137 0.1914 0.2088 REMARK 3 10 2.2300 - 2.1500 0.97 2641 154 0.1848 0.2250 REMARK 3 11 2.1500 - 2.0900 0.97 2687 132 0.1914 0.2923 REMARK 3 12 2.0900 - 2.0300 0.96 2652 131 0.1990 0.2257 REMARK 3 13 2.0300 - 1.9700 0.96 2600 145 0.2067 0.2327 REMARK 3 14 1.9700 - 1.9200 0.94 2609 143 0.2254 0.2728 REMARK 3 15 1.9200 - 1.8800 0.95 2628 136 0.2450 0.2860 REMARK 3 16 1.8800 - 1.8400 0.96 2668 118 0.2608 0.3161 REMARK 3 17 1.8400 - 1.8000 0.95 2592 139 0.2594 0.2961 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.673 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 4878 REMARK 3 ANGLE : 0.944 6627 REMARK 3 CHIRALITY : 0.058 749 REMARK 3 PLANARITY : 0.008 860 REMARK 3 DIHEDRAL : 14.057 1757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9780 4.7244 -24.3452 REMARK 3 T TENSOR REMARK 3 T11: 0.2248 T22: 0.1796 REMARK 3 T33: 0.1741 T12: -0.0117 REMARK 3 T13: -0.0074 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.7381 L22: 1.5198 REMARK 3 L33: 1.7565 L12: -0.7782 REMARK 3 L13: 0.7975 L23: -0.5326 REMARK 3 S TENSOR REMARK 3 S11: -0.2360 S12: 0.0018 S13: 0.1624 REMARK 3 S21: 0.1116 S22: 0.1346 S23: -0.0634 REMARK 3 S31: -0.3490 S32: -0.1172 S33: 0.0899 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5687 9.2233 -33.3675 REMARK 3 T TENSOR REMARK 3 T11: 0.2736 T22: 0.3125 REMARK 3 T33: 0.2770 T12: 0.0408 REMARK 3 T13: -0.0244 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 2.5296 L22: 3.3114 REMARK 3 L33: 3.7754 L12: -0.2449 REMARK 3 L13: 0.7190 L23: 1.1365 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: -0.0263 S13: 0.2517 REMARK 3 S21: 0.1498 S22: -0.0304 S23: 0.3184 REMARK 3 S31: -0.2776 S32: -0.3733 S33: 0.1747 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4531 6.8949 -30.3346 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.1795 REMARK 3 T33: 0.2964 T12: -0.0601 REMARK 3 T13: -0.0518 T23: 0.0740 REMARK 3 L TENSOR REMARK 3 L11: 0.9690 L22: 4.3973 REMARK 3 L33: 1.0055 L12: -0.6667 REMARK 3 L13: -0.2034 L23: 1.1182 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: 0.0908 S13: 0.2961 REMARK 3 S21: -0.0108 S22: -0.1085 S23: -0.3213 REMARK 3 S31: -0.4360 S32: 0.1638 S33: 0.0779 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0595 -3.8711 -27.2617 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1978 REMARK 3 T33: 0.1702 T12: -0.0118 REMARK 3 T13: 0.0090 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.0192 L22: 1.9240 REMARK 3 L33: 2.8616 L12: -1.0063 REMARK 3 L13: 0.3307 L23: 0.2608 REMARK 3 S TENSOR REMARK 3 S11: -0.0960 S12: 0.0966 S13: 0.0203 REMARK 3 S21: -0.0526 S22: 0.0756 S23: -0.0452 REMARK 3 S31: 0.0335 S32: 0.0448 S33: 0.0264 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2572 -16.3072 -29.6362 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.1885 REMARK 3 T33: 0.1735 T12: 0.0014 REMARK 3 T13: 0.0144 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.9264 L22: 0.9574 REMARK 3 L33: 0.2797 L12: -0.9736 REMARK 3 L13: 0.0167 L23: -0.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: -0.0114 S13: -0.1414 REMARK 3 S21: -0.0333 S22: 0.0013 S23: 0.1073 REMARK 3 S31: 0.0483 S32: -0.0105 S33: -0.0619 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 302 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9110 -22.7681 -26.8083 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.2256 REMARK 3 T33: 0.1881 T12: 0.0099 REMARK 3 T13: 0.0124 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.5357 L22: 1.9577 REMARK 3 L33: 2.7621 L12: -0.2116 REMARK 3 L13: -0.1639 L23: 0.5473 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: 0.0342 S13: -0.1609 REMARK 3 S21: 0.0580 S22: 0.0908 S23: -0.0827 REMARK 3 S31: 0.2056 S32: 0.2335 S33: -0.0201 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7179 4.8630 -6.3659 REMARK 3 T TENSOR REMARK 3 T11: 0.2439 T22: 0.1975 REMARK 3 T33: 0.2291 T12: 0.0037 REMARK 3 T13: -0.0182 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.0626 L22: 1.0762 REMARK 3 L33: 2.2075 L12: 0.8702 REMARK 3 L13: 1.4538 L23: 0.3523 REMARK 3 S TENSOR REMARK 3 S11: -0.3117 S12: 0.1280 S13: 0.2715 REMARK 3 S21: -0.1137 S22: 0.0935 S23: 0.0523 REMARK 3 S31: -0.4343 S32: 0.1554 S33: 0.2084 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5233 8.8410 1.8794 REMARK 3 T TENSOR REMARK 3 T11: 0.3338 T22: 0.3091 REMARK 3 T33: 0.2860 T12: -0.0055 REMARK 3 T13: -0.0556 T23: -0.0628 REMARK 3 L TENSOR REMARK 3 L11: 2.6074 L22: 3.3270 REMARK 3 L33: 2.3953 L12: 1.3885 REMARK 3 L13: 0.7298 L23: 0.0993 REMARK 3 S TENSOR REMARK 3 S11: -0.1415 S12: -0.2379 S13: 0.2798 REMARK 3 S21: 0.0049 S22: -0.1009 S23: -0.3184 REMARK 3 S31: -0.5240 S32: 0.2635 S33: 0.2270 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2441 -4.0335 -3.4355 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.2089 REMARK 3 T33: 0.1887 T12: 0.0080 REMARK 3 T13: 0.0044 T23: -0.0403 REMARK 3 L TENSOR REMARK 3 L11: 1.7165 L22: 2.3167 REMARK 3 L33: 2.8020 L12: 0.9291 REMARK 3 L13: 0.4163 L23: -0.5582 REMARK 3 S TENSOR REMARK 3 S11: -0.0791 S12: -0.1496 S13: 0.1570 REMARK 3 S21: -0.0451 S22: 0.0322 S23: 0.0259 REMARK 3 S31: -0.0820 S32: -0.1099 S33: 0.0442 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 186 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0818 -16.2895 -1.9608 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.2450 REMARK 3 T33: 0.2152 T12: -0.0110 REMARK 3 T13: 0.0222 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.1124 L22: 0.7902 REMARK 3 L33: 0.1349 L12: 0.7952 REMARK 3 L13: -0.1933 L23: 0.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: 0.0422 S13: 0.0180 REMARK 3 S21: -0.0037 S22: 0.0311 S23: -0.0986 REMARK 3 S31: -0.0492 S32: 0.0616 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9042 -29.2423 -2.1718 REMARK 3 T TENSOR REMARK 3 T11: 0.2937 T22: 0.2307 REMARK 3 T33: 0.2602 T12: 0.0190 REMARK 3 T13: 0.0501 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.7826 L22: 2.7575 REMARK 3 L33: 5.3994 L12: 0.5707 REMARK 3 L13: -0.6650 L23: -1.3712 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: -0.0747 S13: -0.3014 REMARK 3 S21: 0.0670 S22: 0.2440 S23: 0.1210 REMARK 3 S31: 0.4221 S32: -0.2274 S33: -0.0461 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2391 -19.1856 -5.2076 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.2559 REMARK 3 T33: 0.1775 T12: 0.0001 REMARK 3 T13: 0.0172 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.7191 L22: 1.6049 REMARK 3 L33: 2.1604 L12: 0.0811 REMARK 3 L13: -0.2371 L23: -0.7337 REMARK 3 S TENSOR REMARK 3 S11: -0.1080 S12: 0.0818 S13: -0.0913 REMARK 3 S21: -0.0216 S22: 0.0830 S23: 0.0198 REMARK 3 S31: 0.0942 S32: -0.0688 S33: 0.0338 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NG3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292113858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 53.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BBE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MAGNESIUM CHLORIDE HEXAHYDRATE , REMARK 280 0.1M MES PH 6.5, 5 % W/VPEG 4000, 10% V/V 2-PROPANOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -129.67 52.61 REMARK 500 ASP A 48 -114.93 -94.40 REMARK 500 MET A 49 -35.86 65.31 REMARK 500 ASN A 51 58.19 -152.93 REMARK 500 ASN A 84 -124.49 53.95 REMARK 500 TYR A 154 -111.39 58.46 REMARK 500 THR A 169 10.11 95.86 REMARK 500 GLN A 189 43.44 -81.22 REMARK 500 ASP B 33 -131.67 57.71 REMARK 500 HIS B 41 1.45 -69.01 REMARK 500 ASN B 51 48.00 -141.42 REMARK 500 ASN B 84 -121.90 57.14 REMARK 500 TYR B 154 -101.38 55.48 REMARK 500 THR B 169 -0.86 110.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY- REMARK 630 4-METHYLPENTAN-2-YL]-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 ALD A 402 REMARK 630 ALD B 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU LEU DCL REMARK 630 DETAILS: NULL DBREF 7NG3 A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7NG3 B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET CL A 401 1 HET ALD A 402 76 HET ALD B 401 76 HETNAM CL CHLORIDE ION HETNAM ALD N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY-4- HETNAM 2 ALD METHYLPENTAN-2-YL]-L-LEUCINAMIDE FORMUL 3 CL CL 1- FORMUL 4 ALD 2(C26 H43 N3 O5) FORMUL 6 HOH *386(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 LYS A 61 1 9 HELIX 4 AA4 SER A 62 PHE A 66 5 5 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 TYR A 237 1 12 HELIX 7 AA7 THR A 243 GLY A 258 1 16 HELIX 8 AA8 ALA A 260 GLY A 275 1 16 HELIX 9 AA9 THR A 292 SER A 301 1 10 HELIX 10 AB1 SER B 10 GLY B 15 1 6 HELIX 11 AB2 HIS B 41 CYS B 44 5 4 HELIX 12 AB3 ASN B 53 ARG B 60 1 8 HELIX 13 AB4 SER B 62 PHE B 66 5 5 HELIX 14 AB5 ILE B 200 ASN B 214 1 15 HELIX 15 AB6 THR B 226 TYR B 237 1 12 HELIX 16 AB7 THR B 243 LEU B 250 1 8 HELIX 17 AB8 LEU B 250 GLY B 258 1 9 HELIX 18 AB9 ALA B 260 GLY B 275 1 16 HELIX 19 AC1 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 LEU A 67 ALA A 70 -1 N VAL A 68 O LEU A 75 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N GLN A 19 O GLN A 69 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N ILE A 78 O LYS A 90 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 LEU A 167 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASP A 153 O CYS A 156 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 LEU A 167 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 VAL A 171 THR A 175 -1 O VAL A 171 N LEU A 167 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 LEU B 67 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N GLN B 19 O GLN B 69 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 LEU B 167 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASP B 153 O CYS B 156 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O SER B 123 N ALA B 116 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 LEU B 167 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 VAL B 171 THR B 175 -1 O VAL B 171 N LEU B 167 LINK SG CYS A 145 C22 ALD A 402 1555 1555 1.77 LINK SG CYS B 145 C22 ALD B 401 1555 1555 1.76 CRYST1 47.282 54.918 59.503 114.65 99.96 90.54 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021150 0.000198 0.004194 0.00000 SCALE2 0.000000 0.018210 0.008552 0.00000 SCALE3 0.000000 0.000000 0.018851 0.00000