HEADER TRANSCRIPTION 23-FEB-21 7NMB TITLE CYTOPLASMIC DOMAIN OF VIBRIO CHOLERAE TOXR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLERA TOXIN TRANSCRIPTIONAL ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: TOXR, ERS013165_01791; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING DOMAIN WHTH TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 5 AUTHOR N.GUBENSAEK,K.ZANGGER,C.HARTLMUELLER,T.MADL REVDAT 3 19-JUN-24 7NMB 1 REMARK REVDAT 2 10-NOV-21 7NMB 1 JRNL REVDAT 1 20-OCT-21 7NMB 0 JRNL AUTH N.GUBENSAK,E.SCHRANK,C.HARTLMULLER,C.GOBL,F.S.FALSONE, JRNL AUTH 2 W.BECKER,G.E.WAGNER,S.PULIDO,N.H.MEYER,T.PAVKOV-KELLER, JRNL AUTH 3 T.MADL,J.REIDL,K.ZANGGER JRNL TITL STRUCTURAL AND DNA-BINDING PROPERTIES OF THE CYTOPLASMIC JRNL TITL 2 DOMAIN OF VIBRIO CHOLERAE TRANSCRIPTION FACTOR TOXR. JRNL REF J.BIOL.CHEM. V. 297 01167 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34487759 JRNL DOI 10.1016/J.JBC.2021.101167 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CS-ROSETTA REMARK 3 AUTHORS : SHEN, VERNON, BAKER AND BAX REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114221. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 400 UM [U-13C; U-15N] CTOXR_1 REMARK 210 -134, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCO; 3D HN(CO)CA; REMARK 210 3D HCCH-TOCSY; 3D HNCACB; 3D REMARK 210 HN(CA)CO; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; HCCONH REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 5 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-5 REMARK 465 RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 5 REMARK 465 HIS A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 GLU A 10 REMARK 465 ILE A 11 REMARK 465 SER A 12 REMARK 465 MET A 13 REMARK 465 SER A 14 REMARK 465 HIS A 15 REMARK 465 GLU A 129 REMARK 465 MET A 130 REMARK 465 ALA A 131 REMARK 465 ARG A 132 REMARK 465 GLU A 133 REMARK 465 SER A 134 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 -30.01 -132.93 REMARK 500 1 GLU A 78 -174.92 64.94 REMARK 500 1 ARG A 115 -44.97 -130.44 REMARK 500 1 VAL A 126 -61.49 -105.00 REMARK 500 2 ARG A 77 -156.68 59.97 REMARK 500 2 PRO A 113 109.31 -53.88 REMARK 500 2 ARG A 115 -50.07 -129.97 REMARK 500 3 ARG A 115 -44.98 -130.20 REMARK 500 4 TYR A 108 -52.39 -120.00 REMARK 500 4 ARG A 115 -49.98 -130.75 REMARK 500 4 VAL A 126 -61.02 -90.72 REMARK 500 5 GLU A 78 -144.89 55.00 REMARK 500 5 SER A 86 -165.05 64.90 REMARK 500 5 ARG A 115 -67.36 -133.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34606 RELATED DB: BMRB REMARK 900 CYTOPLASMIC DOMAIN OF VIBRIO CHOLERAE TOXR DBREF1 7NMB A 1 133 UNP A0A655QCS4_VIBCL DBREF2 7NMB A A0A655QCS4 1 133 SEQADV 7NMB MET A -9 UNP A0A655QCS INITIATING METHIONINE SEQADV 7NMB ALA A -8 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB HIS A -7 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB HIS A -6 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB HIS A -5 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB HIS A -4 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB HIS A -3 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB HIS A -2 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB GLY A -1 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB SER A 0 UNP A0A655QCS EXPRESSION TAG SEQADV 7NMB SER A 134 UNP A0A655QCS EXPRESSION TAG SEQRES 1 A 144 MET ALA HIS HIS HIS HIS HIS HIS GLY SER MET PHE GLY SEQRES 2 A 144 LEU GLY HIS ASN SER LYS GLU ILE SER MET SER HIS ILE SEQRES 3 A 144 GLY THR LYS PHE ILE LEU ALA GLU LYS PHE THR PHE ASP SEQRES 4 A 144 PRO LEU SER ASN THR LEU ILE ASP LYS GLU ASP SER GLU SEQRES 5 A 144 GLU ILE ILE ARG LEU GLY SER ASN GLU SER ARG ILE LEU SEQRES 6 A 144 TRP LEU LEU ALA GLN ARG PRO ASN GLU VAL ILE SER ARG SEQRES 7 A 144 ASN ASP LEU HIS ASP PHE VAL TRP ARG GLU GLN GLY PHE SEQRES 8 A 144 GLU VAL ASP ASP SER SER LEU THR GLN ALA ILE SER THR SEQRES 9 A 144 LEU ARG LYS MET LEU LYS ASP SER THR LYS SER PRO GLN SEQRES 10 A 144 TYR VAL LYS THR VAL PRO LYS ARG GLY TYR GLN LEU ILE SEQRES 11 A 144 ALA ARG VAL GLU THR VAL GLU GLU GLU MET ALA ARG GLU SEQRES 12 A 144 SER HELIX 1 AA1 GLY A 48 ARG A 61 1 14 HELIX 2 AA2 SER A 67 ARG A 77 1 11 HELIX 3 AA3 SER A 87 LEU A 99 1 13 SHEET 1 AA1 5 ASP A 40 ARG A 46 0 SHEET 2 AA1 5 THR A 34 ASP A 37 -1 N LEU A 35 O ILE A 45 SHEET 3 AA1 5 PHE A 26 ASP A 29 -1 N THR A 27 O ILE A 36 SHEET 4 AA1 5 LYS A 19 LEU A 22 -1 N PHE A 20 O PHE A 28 SHEET 5 AA1 5 VAL A 123 GLU A 127 -1 O VAL A 126 N LYS A 19 SHEET 1 AA2 2 VAL A 109 VAL A 112 0 SHEET 2 AA2 2 GLY A 116 LEU A 119 -1 O GLN A 118 N LYS A 110 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1