HEADER IMMUNE SYSTEM 23-FEB-21 7NME TITLE HUMAN MHC CLASS I, A24 ALLELE PRESENTING QLPRLFPLL, COMPLEX WITH 4C6 TITLE 2 TCR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HUMAN MHC CLASS I, BETA 2 MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: BETA-2-MICROGLOBULIN; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GLN-LEU-PRO-ARG-LEU-PHE-PRO-LEU-LEU; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: 4C6 HUMAN T-CELL RECEPTOR, ALPHA CHAIN; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: 4C6 HUMAN T-CELL RECEPTOR, BETA CHAIN; COMPND 20 CHAIN: E; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 26 MOL_ID: 5; SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 28 ORGANISM_COMMON: HUMAN; SOURCE 29 ORGANISM_TAXID: 9606; SOURCE 30 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 31 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MHC CLASS I, A24, DIABETES RELATED SUPER ANTIGEN, 4C6 TCR, IMMUNE KEYWDS 2 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,A.K.SEWELL,D.K.COLE,A.WALL REVDAT 4 13-NOV-24 7NME 1 REMARK REVDAT 3 31-JAN-24 7NME 1 REMARK REVDAT 2 26-OCT-22 7NME 1 REMARK REVDAT 1 07-SEP-22 7NME 0 JRNL AUTH P.J.RIZKALLAHP,A.K.SEWELL,D.K.COLE,A.WALL JRNL TITL HUMAN MHC CLASS I, A24 ALLELE PRESENTING QLPRLFPLL, COMPLEX JRNL TITL 2 WITH 4C6 TCR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 110.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 42709 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2169 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2906 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 149 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6591 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.320 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.219 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6784 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6105 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9201 ; 1.168 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14085 ; 1.094 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 811 ; 8.828 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 404 ;32.646 ;22.178 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1124 ;17.362 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;17.815 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 853 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7759 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1651 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44950 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 110.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.17900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 1.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 2BCK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS PACT PREMIER C06: REMARK 280 0.1M PCTCP BUFFER, 25% PEG 1500, PH 9.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.58150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.09250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.67350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 110.09250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.58150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.67350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY D 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET D 163 O MET D 166 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -113.57 48.57 REMARK 500 ASP A 119 57.03 26.78 REMARK 500 ASP A 122 128.72 -35.12 REMARK 500 GLN A 180 58.27 -94.69 REMARK 500 SER A 195 169.13 179.37 REMARK 500 THR A 225 48.77 -103.32 REMARK 500 GLU A 275 66.08 -176.66 REMARK 500 TRP B 60 2.65 82.11 REMARK 500 GLU D 15 130.81 -38.66 REMARK 500 GLN D 60 -115.46 45.67 REMARK 500 ALA D 86 177.33 177.86 REMARK 500 ASP D 117 59.35 -153.60 REMARK 500 SER D 128 46.86 33.94 REMARK 500 SER E 28 -68.49 -29.01 REMARK 500 ASN E 52 -121.68 46.51 REMARK 500 SER E 74 -122.97 52.61 REMARK 500 ALA E 89 165.63 177.51 REMARK 500 HIS E 98 -82.07 -143.44 REMARK 500 GLN E 137 26.65 49.43 REMARK 500 ASP E 151 45.79 -88.27 REMARK 500 ASP E 171 134.10 -38.76 REMARK 500 PRO E 174 152.63 -49.79 REMARK 500 ASP E 183 51.65 -113.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER D 165 MET D 166 148.09 REMARK 500 LYS E 72 GLY E 73 -146.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7NMD RELATED DB: PDB REMARK 900 RELATED ID: 7NMF RELATED DB: PDB REMARK 900 RELATED ID: 7NMG RELATED DB: PDB DBREF1 7NME A 1 276 UNP A0A411J078_HUMAN DBREF2 7NME A A0A411J078 25 300 DBREF 7NME B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 7NME C 1 9 PDB 7NME 7NME 1 9 DBREF 7NME D 2 193 PDB 7NME 7NME 2 193 DBREF 7NME E 3 242 PDB 7NME 7NME 3 242 SEQADV 7NME MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE SER THR SER VAL SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLU GLU THR GLY SEQRES 6 A 276 LYS VAL LYS ALA HIS SER GLN THR ASP ARG GLU ASN LEU SEQRES 7 A 276 ARG ILE ALA LEU ARG TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS THR LEU GLN MET MET PHE GLY CYS ASP VAL GLY SEQRES 9 A 276 SER ASP GLY ARG PHE LEU ARG GLY TYR HIS GLN TYR ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP LEU SEQRES 11 A 276 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 276 LYS ARG LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN GLN SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY THR CYS VAL ASP GLY LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 276 ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 GLN LEU PRO ARG LEU PHE PRO LEU LEU SEQRES 1 D 192 GLY GLU ASP VAL GLU GLN SER LEU PHE LEU SER VAL ARG SEQRES 2 D 192 GLU GLY ASP SER SER VAL ILE ASN CYS THR TYR THR ASP SEQRES 3 D 192 SER SER SER THR TYR LEU TYR TRP TYR LYS GLN GLU PRO SEQRES 4 D 192 GLY ALA GLY LEU GLN LEU LEU THR TYR ILE PHE SER ASN SEQRES 5 D 192 MET ASP MET LYS GLN ASP GLN ARG LEU THR VAL LEU LEU SEQRES 6 D 192 ASN LYS LYS ASP LYS HIS LEU SER LEU ARG ILE ALA ASP SEQRES 7 D 192 THR GLN THR GLY ASP SER ALA ILE TYR PHE CYS ALA GLU SEQRES 8 D 192 PRO SER GLY ASN THR GLY LYS LEU ILE PHE GLY GLN GLY SEQRES 9 D 192 THR THR LEU GLN VAL LYS PRO ILE GLN ASN PRO ASP PRO SEQRES 10 D 192 ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SEQRES 11 D 192 SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN SEQRES 12 D 192 VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP SEQRES 13 D 192 LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SER SEQRES 14 D 192 ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA SEQRES 15 D 192 CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 1 E 240 THR GLY VAL SER GLN ASP PRO ARG HIS LYS ILE THR LYS SEQRES 2 E 240 ARG GLY GLN ASN VAL THR PHE ARG CYS ASP PRO ILE SER SEQRES 3 E 240 GLU HIS ASN ARG LEU TYR TRP TYR ARG GLN THR LEU GLY SEQRES 4 E 240 GLN GLY PRO GLU PHE LEU THR TYR PHE GLN ASN GLU ALA SEQRES 5 E 240 GLN LEU GLU LYS SER ARG LEU LEU SER ASP ARG PHE SER SEQRES 6 E 240 ALA GLU ARG PRO LYS GLY SER PHE SER THR LEU GLU ILE SEQRES 7 E 240 GLN ARG THR GLU GLN GLY ASP SER ALA MET TYR LEU CYS SEQRES 8 E 240 ALA SER SER LEU HIS HIS GLU GLN TYR PHE GLY PRO GLY SEQRES 9 E 240 THR ARG LEU THR VAL THR GLU ASP LEU LYS ASN VAL PHE SEQRES 10 E 240 PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU SEQRES 11 E 240 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 E 240 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 E 240 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 E 240 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 E 240 ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 E 240 PHE TRP GLN ASP PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 E 240 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 E 240 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 E 240 ALA TRP GLY ARG ALA ASP HET BTB A 301 14 HET SO4 A 302 5 HET EDO A 303 4 HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN BTB BIS-TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 6 BTB C8 H19 N O5 FORMUL 7 SO4 O4 S 2- FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *200(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 HIS A 151 1 15 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU A 253 GLN A 255 5 3 HELIX 8 AA8 GLN D 81 SER D 85 5 5 HELIX 9 AA9 ALA D 183 ALA D 187 5 5 HELIX 10 AB1 GLU E 84 SER E 88 5 5 HELIX 11 AB2 ASP E 114 VAL E 118 5 5 HELIX 12 AB3 SER E 129 GLN E 137 1 9 HELIX 13 AB4 ALA E 196 GLN E 200 1 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N THR A 10 O ILE A 23 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O VAL A 249 N ALA A 199 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 3 THR A 214 ARG A 219 0 SHEET 2 AA4 3 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 3 AA4 3 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 PHE D 10 ARG D 14 0 SHEET 2 AA8 5 THR D 106 LYS D 111 1 O GLN D 109 N LEU D 11 SHEET 3 AA8 5 ALA D 86 SER D 94 -1 N TYR D 88 O THR D 106 SHEET 4 AA8 5 TYR D 32 GLN D 38 -1 N TYR D 36 O PHE D 89 SHEET 5 AA8 5 GLN D 45 PHE D 51 -1 O THR D 48 N TRP D 35 SHEET 1 AA9 4 PHE D 10 ARG D 14 0 SHEET 2 AA9 4 THR D 106 LYS D 111 1 O GLN D 109 N LEU D 11 SHEET 3 AA9 4 ALA D 86 SER D 94 -1 N TYR D 88 O THR D 106 SHEET 4 AA9 4 LYS D 99 PHE D 102 -1 O LYS D 99 N SER D 94 SHEET 1 AB1 4 SER D 19 THR D 24 0 SHEET 2 AB1 4 HIS D 72 ILE D 77 -1 O LEU D 73 N CYS D 23 SHEET 3 AB1 4 LEU D 62 ASN D 67 -1 N THR D 63 O ARG D 76 SHEET 4 AB1 4 MET D 56 ASP D 59 -1 N LYS D 57 O VAL D 64 SHEET 1 AB2 4 ALA D 119 ARG D 124 0 SHEET 2 AB2 4 SER D 132 PHE D 139 -1 O VAL D 133 N LEU D 123 SHEET 3 AB2 4 PHE D 168 SER D 177 -1 O ALA D 173 N PHE D 136 SHEET 4 AB2 4 VAL D 153 ILE D 155 -1 N TYR D 154 O TRP D 176 SHEET 1 AB3 4 ALA D 119 ARG D 124 0 SHEET 2 AB3 4 SER D 132 PHE D 139 -1 O VAL D 133 N LEU D 123 SHEET 3 AB3 4 PHE D 168 SER D 177 -1 O ALA D 173 N PHE D 136 SHEET 4 AB3 4 CYS D 159 MET D 163 -1 N MET D 163 O PHE D 168 SHEET 1 AB4 2 THR D 143 VAL D 145 0 SHEET 2 AB4 2 ASN D 190 ILE D 192 -1 O SER D 191 N ASN D 144 SHEET 1 AB5 4 SER E 6 ASP E 8 0 SHEET 2 AB5 4 VAL E 20 ASP E 25 -1 O ARG E 23 N ASP E 8 SHEET 3 AB5 4 SER E 76 ILE E 80 -1 O SER E 76 N CYS E 24 SHEET 4 AB5 4 PHE E 66 GLU E 69 -1 N SER E 67 O GLU E 79 SHEET 1 AB6 6 HIS E 11 LYS E 15 0 SHEET 2 AB6 6 THR E 107 THR E 112 1 O ARG E 108 N LYS E 12 SHEET 3 AB6 6 ALA E 89 SER E 96 -1 N ALA E 89 O LEU E 109 SHEET 4 AB6 6 ARG E 32 GLN E 38 -1 N TYR E 36 O LEU E 92 SHEET 5 AB6 6 GLU E 45 GLN E 51 -1 O LEU E 47 N TRP E 35 SHEET 6 AB6 6 ALA E 54 LYS E 58 -1 O ALA E 54 N GLN E 51 SHEET 1 AB7 4 HIS E 11 LYS E 15 0 SHEET 2 AB7 4 THR E 107 THR E 112 1 O ARG E 108 N LYS E 12 SHEET 3 AB7 4 ALA E 89 SER E 96 -1 N ALA E 89 O LEU E 109 SHEET 4 AB7 4 TYR E 102 PHE E 103 -1 O TYR E 102 N SER E 95 SHEET 1 AB8 4 GLU E 122 PHE E 126 0 SHEET 2 AB8 4 LYS E 138 PHE E 148 -1 O VAL E 142 N PHE E 126 SHEET 3 AB8 4 TYR E 186 SER E 195 -1 O TYR E 186 N PHE E 148 SHEET 4 AB8 4 VAL E 168 THR E 170 -1 N CYS E 169 O ARG E 191 SHEET 1 AB9 4 GLU E 122 PHE E 126 0 SHEET 2 AB9 4 LYS E 138 PHE E 148 -1 O VAL E 142 N PHE E 126 SHEET 3 AB9 4 TYR E 186 SER E 195 -1 O TYR E 186 N PHE E 148 SHEET 4 AB9 4 LEU E 175 LYS E 176 -1 N LEU E 175 O ALA E 187 SHEET 1 AC1 4 LYS E 162 GLU E 163 0 SHEET 2 AC1 4 VAL E 153 VAL E 159 -1 N VAL E 159 O LYS E 162 SHEET 3 AC1 4 HIS E 205 PHE E 212 -1 O GLN E 209 N SER E 156 SHEET 4 AC1 4 GLN E 231 TRP E 238 -1 O GLN E 231 N PHE E 212 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.15 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.05 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.01 SSBOND 4 CYS D 23 CYS D 90 1555 1555 2.09 SSBOND 5 CYS D 134 CYS D 184 1555 1555 2.07 SSBOND 6 CYS D 159 CYS E 169 1555 1555 2.08 SSBOND 7 CYS E 24 CYS E 93 1555 1555 2.04 SSBOND 8 CYS E 143 CYS E 208 1555 1555 1.99 CISPEP 1 TYR A 209 PRO A 210 0 -3.13 CISPEP 2 HIS B 31 PRO B 32 0 2.47 CISPEP 3 ASP E 8 PRO E 9 0 -8.72 CISPEP 4 TYR E 149 PRO E 150 0 0.08 CRYST1 55.163 71.347 220.185 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018128 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004542 0.00000