HEADER TOXIN 23-FEB-21 7NMQ TITLE BACILLUS CEREUS HBLL1 TOXIN COMPONENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOLYSIN BL LYTIC COMPONENT L1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEMOLYSIN BL-BINDING COMPONENT,HEMOLYSIN D,HEMOLYTIC COMPND 5 ENTEROTOXIN HBL LYTIC COMPONENT L1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: HBLD, HBLA_3, HBLA_5, A9485_22250, B4080_2259, SOURCE 5 BACERE00184_05564, BLD50_23415, BLX06_15130, C1N66_23990, SOURCE 6 C6A78_05365, C6Y54_18295, CJ306_16805, CN357_02795, CN490_15095, SOURCE 7 CN508_00570, CN516_18660, CN950_19490, CN959_26890, CN980_29445, SOURCE 8 COA01_24215, COA24_28650, COA26_17090, COC69_20455, COD14_28250, SOURCE 9 COD86_04255, COI98_28045, COK33_32670, CON36_29700, CON37_30715, SOURCE 10 CSW12_15440, D0437_29230, DR116_0005010, FC693_25985, FHP23_10995, SOURCE 11 FHR06_03165, FOC92_03975, FORC47_2296, FXB61_000321, HLB41_12235, SOURCE 12 NCTC7464_00229, TU58_21945, TU68_26310; SOURCE 13 EXPRESSION_SYSTEM: BACILLUS ANTHRACIS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 1392; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BH460 KEYWDS BACILLUS CEREUS, TOXIN, HAEMOLYSIN BL, ALPHA HELICAL PORE FORMING KEYWDS 2 TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,C.BERRY REVDAT 5 31-JAN-24 7NMQ 1 REMARK REVDAT 4 28-APR-21 7NMQ 1 JRNL REVDAT 3 21-APR-21 7NMQ 1 TITLE JRNL REVDAT 2 14-APR-21 7NMQ 1 JRNL REVDAT 1 07-APR-21 7NMQ 0 JRNL AUTH H.L.WORTHY,L.J.WILLIAMSON,H.S.AUHIM,S.H.LEPPLA,I.SASTALLA, JRNL AUTH 2 D.D.JONES,P.J.RIZKALLAH,C.BERRY JRNL TITL THE CRYSTAL STRUCTURE OF BACILLUS CEREUS HBLL 1 . JRNL REF TOXINS V. 13 2021 JRNL REFN ESSN 2072-6651 JRNL PMID 33807365 JRNL DOI 10.3390/TOXINS13040253 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 73264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.36 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.3320 REMARK 3 BIN FREE R VALUE SET COUNT : 281 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 1.12000 REMARK 3 B33 (A**2) : -1.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.516 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3065 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2962 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4164 ; 1.686 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6859 ; 1.621 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 415 ; 4.365 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.935 ;26.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 556 ;13.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 8.889 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3647 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 649 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3035 ; 5.670 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 210 REMARK 3 RESIDUE RANGE : A 315 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): 16.925 93.571 11.824 REMARK 3 T TENSOR REMARK 3 T11: 0.0754 T22: 0.0026 REMARK 3 T33: 0.1217 T12: -0.0043 REMARK 3 T13: -0.0017 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.3576 L22: 2.6416 REMARK 3 L33: 0.1951 L12: 0.8392 REMARK 3 L13: 0.2033 L23: 0.6405 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.0035 S13: -0.0053 REMARK 3 S21: 0.0324 S22: 0.0119 S23: 0.0109 REMARK 3 S31: 0.0198 S32: -0.0054 S33: -0.0077 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 314 REMARK 3 ORIGIN FOR THE GROUP (A): 8.644 108.398 26.308 REMARK 3 T TENSOR REMARK 3 T11: 0.0498 T22: 0.0056 REMARK 3 T33: 0.1350 T12: 0.0042 REMARK 3 T13: 0.0017 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 1.3316 L22: 1.2050 REMARK 3 L33: 0.8755 L12: 0.9084 REMARK 3 L13: -0.0200 L23: -0.1836 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: -0.0188 S13: 0.0440 REMARK 3 S21: -0.0400 S22: 0.0120 S23: 0.0186 REMARK 3 S31: -0.0451 S32: -0.0015 S33: -0.0174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7NMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-21. REMARK 100 THE DEPOSITION ID IS D_1292114270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 64.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 1.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5KUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CACODYLATE BIS TRIS PROPIONATE, REMARK 280 25% W/V PEG 1500, PH 4.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.52500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.52500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 57 O HOH A 601 2.09 REMARK 500 OE2 GLU A 91 NZ LYS A 94 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 198 CG ASP A 198 OD1 0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 104 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -134.65 55.76 REMARK 500 THR A 113 -56.05 -123.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 DBREF 7NMQ A 42 406 UNP Q1XBV1 Q1XBV1_BACCE 41 405 SEQRES 1 A 365 GLY ASN TYR ALA LEU GLY PRO GLU GLY LEU LYS LYS ALA SEQRES 2 A 365 LEU ALA GLU THR GLY SER HIS ILE LEU VAL MET ASP LEU SEQRES 3 A 365 TYR ALA LYS THR MET ILE LYS GLN PRO ASN VAL ASN LEU SEQRES 4 A 365 SER ASN ILE ASP LEU GLY SER GLU GLY GLY GLU LEU LEU SEQRES 5 A 365 LYS ASN ILE HIS LEU ASN GLN GLU LEU SER ARG ILE ASN SEQRES 6 A 365 ALA ASN TYR TRP LEU ASP THR ALA LYS PRO GLN ILE GLN SEQRES 7 A 365 LYS THR ALA ARG ASN ILE VAL ASN TYR ASP GLU GLN PHE SEQRES 8 A 365 GLN ASN TYR TYR ASP THR LEU VAL GLU THR VAL GLN LYS SEQRES 9 A 365 LYS ASP LYS ALA GLY LEU LYS GLU GLY ILE ASN ASP LEU SEQRES 10 A 365 ILE THR THR ILE ASN THR ASN SER LYS GLU VAL THR ASP SEQRES 11 A 365 VAL ILE LYS MET LEU GLN ASP PHE LYS GLY LYS LEU TYR SEQRES 12 A 365 GLN ASN SER THR ASP PHE LYS ASN ASN VAL GLY GLY PRO SEQRES 13 A 365 ASP GLY LYS GLY GLY LEU THR ALA ILE LEU ALA GLY GLN SEQRES 14 A 365 GLN ALA THR ILE PRO GLN LEU GLN ALA GLU ILE GLU GLN SEQRES 15 A 365 LEU ARG SER THR GLN LYS LYS HIS PHE ASP ASP VAL LEU SEQRES 16 A 365 ALA TRP SER ILE GLY GLY GLY LEU GLY ALA ALA ILE LEU SEQRES 17 A 365 VAL ILE ALA ALA ILE GLY GLY ALA VAL VAL ILE VAL VAL SEQRES 18 A 365 THR GLY GLY THR ALA THR PRO ALA VAL VAL GLY GLY LEU SEQRES 19 A 365 SER ALA LEU GLY ALA ALA GLY ILE GLY LEU GLY THR ALA SEQRES 20 A 365 ALA GLY VAL THR ALA SER LYS HIS MET ASP SER TYR ASN SEQRES 21 A 365 GLU ILE SER ASN LYS ILE GLY GLU LEU SER MET LYS ALA SEQRES 22 A 365 ASP ARG ALA ASN GLN ALA VAL LEU SER LEU THR ASN ALA SEQRES 23 A 365 LYS GLU THR LEU ALA TYR LEU TYR GLN THR VAL ASP GLN SEQRES 24 A 365 ALA ILE LEU SER LEU THR ASN ILE GLN LYS GLN TRP ASN SEQRES 25 A 365 THR MET GLY ALA ASN TYR THR ASP LEU LEU ASP ASN ILE SEQRES 26 A 365 ASP SER MET GLN ASP HIS LYS PHE SER LEU ILE PRO ASP SEQRES 27 A 365 ASP LEU LYS ALA ALA LYS GLU SER TRP ASN ASP ILE HIS SEQRES 28 A 365 LYS ASP ALA GLU PHE ILE SER LYS ASP ILE ALA PHE LYS SEQRES 29 A 365 GLN HET PEG A 501 7 HET PEG A 502 7 HET PEG A 503 7 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PEG 3(C4 H10 O3) FORMUL 5 EDO 4(C2 H6 O2) FORMUL 9 HOH *489(H2 O) HELIX 1 AA1 GLY A 50 GLN A 75 1 26 HELIX 2 AA2 LEU A 85 THR A 113 1 29 HELIX 3 AA3 THR A 113 LYS A 145 1 33 HELIX 4 AA4 ASP A 147 GLY A 196 1 50 HELIX 5 AA5 GLY A 201 GLN A 211 1 11 HELIX 6 AA6 THR A 213 GLY A 242 1 30 HELIX 7 AA7 GLY A 243 ALA A 257 1 15 HELIX 8 AA8 LEU A 275 GLY A 279 5 5 HELIX 9 AA9 THR A 287 ALA A 314 1 28 HELIX 10 AB1 ASP A 315 ILE A 366 1 52 HELIX 11 AB2 GLN A 370 SER A 399 1 30 SHEET 1 AA1 2 VAL A 258 THR A 263 0 SHEET 2 AA1 2 THR A 266 VAL A 271 -1 O THR A 268 N VAL A 261 SITE 1 AC1 9 SER A 187 LYS A 191 LYS A 328 GLU A 329 SITE 2 AC1 9 ALA A 332 TYR A 333 HOH A 668 HOH A 770 SITE 3 AC1 9 HOH A 925 SITE 1 AC2 11 PRO A 76 VAL A 262 THR A 263 GLY A 264 SITE 2 AC2 11 GLY A 265 MET A 369 GLN A 370 HIS A 372 SITE 3 AC2 11 LYS A 373 HOH A 614 HOH A 980 SITE 1 AC3 3 ASN A 82 ASN A 358 ASP A 361 SITE 1 AC4 7 ASP A 147 LYS A 148 ALA A 149 HOH A 840 SITE 2 AC4 7 HOH A 851 HOH A 863 HOH A 932 SITE 1 AC5 5 ASN A 156 ILE A 159 THR A 160 HOH A 766 SITE 2 AC5 5 HOH A 975 SITE 1 AC6 7 TYR A 68 ARG A 225 GLN A 228 LYS A 229 SITE 2 AC6 7 TYR A 300 HOH A 613 HOH A 664 SITE 1 AC7 5 LEU A 92 ASN A 192 ASN A 193 HOH A 719 SITE 2 AC7 5 HOH A 894 CRYST1 36.660 72.960 133.050 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007516 0.00000