HEADER TRANSFERASE 05-MAR-21 7NS7 TITLE HUMAN L-ALANINE:GLYOXYLATE AMINOTRANSFERASE MINOR ALLELE VARIANT: TITLE 2 AGXT-MI (P11L-I340M) COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ALANINE:GLYOXYLATE AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALANINE-GLYOXYLATE AMINOTRANSFERASE, SERINE-PYRUVATE COMPND 5 AMINOTRANSFERASE; COMPND 6 EC: 2.6.1.44,2.6.1.51; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: POLYMORPHIC VARIANT P11L-I340M. PLP BOUND TO K209 COMPND 9 INTERNAL ALDIMINE FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: P11L; SOURCE 6 GENE: AGXT; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALANINE-GLYOXYLATE TRANSAMINASE, ALANINE-GLYOXYLATE AMINOTRANSFERASE, KEYWDS 2 ALANINE-GLYOXYLIC AMINOTRANSFERASE, L-ALANINE-GLYCINE TRANSAMINASE, KEYWDS 3 PYRODOXAL, DISORDER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.CELLINI,M.DINDO REVDAT 4 31-JAN-24 7NS7 1 REMARK REVDAT 3 11-MAY-22 7NS7 1 JRNL REVDAT 2 20-APR-22 7NS7 1 JRNL REVDAT 1 23-MAR-22 7NS7 0 JRNL AUTH M.DINDO,S.PASCARELLI,D.CHIASSERINI,S.GROTTELLI,C.COSTANTINI, JRNL AUTH 2 G.I.UECHI,G.GIARDINA,P.LAURINO,B.CELLINI JRNL TITL STRUCTURAL DYNAMICS SHAPE THE FITNESS WINDOW OF JRNL TITL 2 ALANINE:GLYOXYLATE AMINOTRANSFERASE. JRNL REF PROTEIN SCI. V. 31 E4303 2022 JRNL REFN ESSN 1469-896X JRNL PMID 35481644 JRNL DOI 10.1002/PRO.4303 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 51579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 5660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3831 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 373 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5202 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.61000 REMARK 3 B22 (A**2) : 11.61000 REMARK 3 B33 (A**2) : -23.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.887 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.831 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5318 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4993 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7229 ; 1.589 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11551 ; 1.412 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 673 ; 6.715 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;37.160 ;21.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;18.420 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;22.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 686 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5921 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1075 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.505 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.495 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NS7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292109461. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57290 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 64.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5F9S REMARK 200 REMARK 200 REMARK: DIAMOND SHAPED YELLOW CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 MIXING OF: PROTEIN: 0.04M AGT-MI REMARK 280 SOLUTION IN 0.1M KPHO PRECIPITANT: 0.03M MGCL2 , 0.03M CACL2 , REMARK 280 0.05M HEPES 0.05M MOPS AT A FINAL PH 7.5, 40% V/V ETHYLENE REMARK 280 GLYCOL; 20% W/V PEG 8K, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.42900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.21450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.64350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 HIS A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 GLY A 97 REMARK 465 ASP A 98 REMARK 465 SER A 99 REMARK 465 PHE A 100 REMARK 465 LEU A 101 REMARK 465 VAL A 102 REMARK 465 ALA A 121 REMARK 465 ARG A 122 REMARK 465 VAL A 123 REMARK 465 HIS A 124 REMARK 465 PRO A 125 REMARK 465 MET A 126 REMARK 465 THR A 127 REMARK 465 LYS A 128 REMARK 465 ASP A 129 REMARK 465 PRO A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 HIS A 133 REMARK 465 TYR A 134 REMARK 465 THR A 135 REMARK 465 LEU A 136 REMARK 465 GLN A 137 REMARK 465 GLU A 138 REMARK 465 VAL A 139 REMARK 465 GLU A 140 REMARK 465 GLU A 141 REMARK 465 GLY A 142 REMARK 465 LEU A 143 REMARK 465 ALA A 144 REMARK 465 GLN A 145 REMARK 465 HIS A 146 REMARK 465 GLY A 170 REMARK 465 GLU A 171 REMARK 465 LEU A 172 REMARK 465 CYS A 173 REMARK 465 HIS A 174 REMARK 465 ARG A 175 REMARK 465 TYR A 176 REMARK 465 LYS A 177 REMARK 465 LYS A 391 REMARK 465 LEU A 392 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 HIS B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 7 REMARK 465 VAL B 8 REMARK 465 THR B 9 REMARK 465 PRO B 10 REMARK 465 GLY B 97 REMARK 465 ASP B 98 REMARK 465 SER B 99 REMARK 465 PHE B 100 REMARK 465 LEU B 101 REMARK 465 VAL B 102 REMARK 465 ALA B 121 REMARK 465 ARG B 122 REMARK 465 VAL B 123 REMARK 465 HIS B 124 REMARK 465 PRO B 125 REMARK 465 MET B 126 REMARK 465 THR B 127 REMARK 465 LYS B 128 REMARK 465 ASP B 129 REMARK 465 PRO B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 HIS B 133 REMARK 465 TYR B 134 REMARK 465 THR B 135 REMARK 465 LEU B 136 REMARK 465 GLN B 137 REMARK 465 GLU B 138 REMARK 465 VAL B 139 REMARK 465 GLU B 140 REMARK 465 GLU B 141 REMARK 465 GLY B 142 REMARK 465 LEU B 143 REMARK 465 ALA B 144 REMARK 465 GLN B 145 REMARK 465 HIS B 146 REMARK 465 GLU B 171 REMARK 465 LEU B 172 REMARK 465 CYS B 173 REMARK 465 HIS B 174 REMARK 465 ARG B 175 REMARK 465 TYR B 176 REMARK 465 LYS B 177 REMARK 465 LYS B 391 REMARK 465 LEU B 392 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 12 CD CE NZ REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 LYS A 228 CD CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 312 CD CE NZ REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 LYS B 12 CG CD CE NZ REMARK 470 LYS B 16 CD CE NZ REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 225 CD CE NZ REMARK 470 LYS B 228 CD CE NZ REMARK 470 LYS B 234 CD CE NZ REMARK 470 LYS B 312 CD CE NZ REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 LYS B 390 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 243 NH2 ARG B 118 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 28 6.53 -59.85 REMARK 500 MET A 49 28.63 -144.03 REMARK 500 ASN A 105 -67.83 -123.41 REMARK 500 LLP A 209 -130.57 -101.88 REMARK 500 HIS A 261 -72.63 -114.37 REMARK 500 PRO B 28 7.11 -61.30 REMARK 500 GLN B 69 64.90 63.06 REMARK 500 ASN B 105 -69.01 -127.27 REMARK 500 LLP B 209 -105.22 -86.57 REMARK 500 HIS B 261 -72.70 -117.65 REMARK 500 REMARK 500 REMARK: NULL DBREF 7NS7 A 1 392 UNP P21549 SPYA_HUMAN 1 392 DBREF 7NS7 B 1 392 UNP P21549 SPYA_HUMAN 1 392 SEQADV 7NS7 LEU A 11 UNP P21549 PRO 11 VARIANT SEQADV 7NS7 MET A 340 UNP P21549 ILE 340 VARIANT SEQADV 7NS7 LEU B 11 UNP P21549 PRO 11 VARIANT SEQADV 7NS7 MET B 340 UNP P21549 ILE 340 VARIANT SEQRES 1 A 392 MET ALA SER HIS LYS LEU LEU VAL THR PRO LEU LYS ALA SEQRES 2 A 392 LEU LEU LYS PRO LEU SER ILE PRO ASN GLN LEU LEU LEU SEQRES 3 A 392 GLY PRO GLY PRO SER ASN LEU PRO PRO ARG ILE MET ALA SEQRES 4 A 392 ALA GLY GLY LEU GLN MET ILE GLY SER MET SER LYS ASP SEQRES 5 A 392 MET TYR GLN ILE MET ASP GLU ILE LYS GLU GLY ILE GLN SEQRES 6 A 392 TYR VAL PHE GLN THR ARG ASN PRO LEU THR LEU VAL ILE SEQRES 7 A 392 SER GLY SER GLY HIS CYS ALA LEU GLU ALA ALA LEU VAL SEQRES 8 A 392 ASN VAL LEU GLU PRO GLY ASP SER PHE LEU VAL GLY ALA SEQRES 9 A 392 ASN GLY ILE TRP GLY GLN ARG ALA VAL ASP ILE GLY GLU SEQRES 10 A 392 ARG ILE GLY ALA ARG VAL HIS PRO MET THR LYS ASP PRO SEQRES 11 A 392 GLY GLY HIS TYR THR LEU GLN GLU VAL GLU GLU GLY LEU SEQRES 12 A 392 ALA GLN HIS LYS PRO VAL LEU LEU PHE LEU THR HIS GLY SEQRES 13 A 392 GLU SER SER THR GLY VAL LEU GLN PRO LEU ASP GLY PHE SEQRES 14 A 392 GLY GLU LEU CYS HIS ARG TYR LYS CYS LEU LEU LEU VAL SEQRES 15 A 392 ASP SER VAL ALA SER LEU GLY GLY THR PRO LEU TYR MET SEQRES 16 A 392 ASP ARG GLN GLY ILE ASP ILE LEU TYR SER GLY SER GLN SEQRES 17 A 392 LLP ALA LEU ASN ALA PRO PRO GLY THR SER LEU ILE SER SEQRES 18 A 392 PHE SER ASP LYS ALA LYS LYS LYS MET TYR SER ARG LYS SEQRES 19 A 392 THR LYS PRO PHE SER PHE TYR LEU ASP ILE LYS TRP LEU SEQRES 20 A 392 ALA ASN PHE TRP GLY CYS ASP ASP GLN PRO ARG MET TYR SEQRES 21 A 392 HIS HIS THR ILE PRO VAL ILE SER LEU TYR SER LEU ARG SEQRES 22 A 392 GLU SER LEU ALA LEU ILE ALA GLU GLN GLY LEU GLU ASN SEQRES 23 A 392 SER TRP ARG GLN HIS ARG GLU ALA ALA ALA TYR LEU HIS SEQRES 24 A 392 GLY ARG LEU GLN ALA LEU GLY LEU GLN LEU PHE VAL LYS SEQRES 25 A 392 ASP PRO ALA LEU ARG LEU PRO THR VAL THR THR VAL ALA SEQRES 26 A 392 VAL PRO ALA GLY TYR ASP TRP ARG ASP ILE VAL SER TYR SEQRES 27 A 392 VAL MET ASP HIS PHE ASP ILE GLU ILE MET GLY GLY LEU SEQRES 28 A 392 GLY PRO SER THR GLY LYS VAL LEU ARG ILE GLY LEU LEU SEQRES 29 A 392 GLY CYS ASN ALA THR ARG GLU ASN VAL ASP ARG VAL THR SEQRES 30 A 392 GLU ALA LEU ARG ALA ALA LEU GLN HIS CYS PRO LYS LYS SEQRES 31 A 392 LYS LEU SEQRES 1 B 392 MET ALA SER HIS LYS LEU LEU VAL THR PRO LEU LYS ALA SEQRES 2 B 392 LEU LEU LYS PRO LEU SER ILE PRO ASN GLN LEU LEU LEU SEQRES 3 B 392 GLY PRO GLY PRO SER ASN LEU PRO PRO ARG ILE MET ALA SEQRES 4 B 392 ALA GLY GLY LEU GLN MET ILE GLY SER MET SER LYS ASP SEQRES 5 B 392 MET TYR GLN ILE MET ASP GLU ILE LYS GLU GLY ILE GLN SEQRES 6 B 392 TYR VAL PHE GLN THR ARG ASN PRO LEU THR LEU VAL ILE SEQRES 7 B 392 SER GLY SER GLY HIS CYS ALA LEU GLU ALA ALA LEU VAL SEQRES 8 B 392 ASN VAL LEU GLU PRO GLY ASP SER PHE LEU VAL GLY ALA SEQRES 9 B 392 ASN GLY ILE TRP GLY GLN ARG ALA VAL ASP ILE GLY GLU SEQRES 10 B 392 ARG ILE GLY ALA ARG VAL HIS PRO MET THR LYS ASP PRO SEQRES 11 B 392 GLY GLY HIS TYR THR LEU GLN GLU VAL GLU GLU GLY LEU SEQRES 12 B 392 ALA GLN HIS LYS PRO VAL LEU LEU PHE LEU THR HIS GLY SEQRES 13 B 392 GLU SER SER THR GLY VAL LEU GLN PRO LEU ASP GLY PHE SEQRES 14 B 392 GLY GLU LEU CYS HIS ARG TYR LYS CYS LEU LEU LEU VAL SEQRES 15 B 392 ASP SER VAL ALA SER LEU GLY GLY THR PRO LEU TYR MET SEQRES 16 B 392 ASP ARG GLN GLY ILE ASP ILE LEU TYR SER GLY SER GLN SEQRES 17 B 392 LLP ALA LEU ASN ALA PRO PRO GLY THR SER LEU ILE SER SEQRES 18 B 392 PHE SER ASP LYS ALA LYS LYS LYS MET TYR SER ARG LYS SEQRES 19 B 392 THR LYS PRO PHE SER PHE TYR LEU ASP ILE LYS TRP LEU SEQRES 20 B 392 ALA ASN PHE TRP GLY CYS ASP ASP GLN PRO ARG MET TYR SEQRES 21 B 392 HIS HIS THR ILE PRO VAL ILE SER LEU TYR SER LEU ARG SEQRES 22 B 392 GLU SER LEU ALA LEU ILE ALA GLU GLN GLY LEU GLU ASN SEQRES 23 B 392 SER TRP ARG GLN HIS ARG GLU ALA ALA ALA TYR LEU HIS SEQRES 24 B 392 GLY ARG LEU GLN ALA LEU GLY LEU GLN LEU PHE VAL LYS SEQRES 25 B 392 ASP PRO ALA LEU ARG LEU PRO THR VAL THR THR VAL ALA SEQRES 26 B 392 VAL PRO ALA GLY TYR ASP TRP ARG ASP ILE VAL SER TYR SEQRES 27 B 392 VAL MET ASP HIS PHE ASP ILE GLU ILE MET GLY GLY LEU SEQRES 28 B 392 GLY PRO SER THR GLY LYS VAL LEU ARG ILE GLY LEU LEU SEQRES 29 B 392 GLY CYS ASN ALA THR ARG GLU ASN VAL ASP ARG VAL THR SEQRES 30 B 392 GLU ALA LEU ARG ALA ALA LEU GLN HIS CYS PRO LYS LYS SEQRES 31 B 392 LYS LEU MODRES 7NS7 LLP A 209 LYS MODIFIED RESIDUE MODRES 7NS7 LLP B 209 LYS MODIFIED RESIDUE HET LLP A 209 24 HET LLP B 209 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *75(H2 O) HELIX 1 AA1 LEU A 11 LYS A 16 1 6 HELIX 2 AA2 PRO A 34 GLY A 42 1 9 HELIX 3 AA3 SER A 50 GLN A 69 1 20 HELIX 4 AA4 SER A 81 LEU A 94 1 14 HELIX 5 AA5 ILE A 107 GLY A 120 1 14 HELIX 6 AA6 SER A 223 SER A 232 1 10 HELIX 7 AA7 ASP A 243 TRP A 251 1 9 HELIX 8 AA8 PRO A 265 GLY A 283 1 19 HELIX 9 AA9 GLY A 283 LEU A 305 1 23 HELIX 10 AB1 ASP A 313 ARG A 317 5 5 HELIX 11 AB2 ASP A 331 ASP A 344 1 14 HELIX 12 AB3 LEU A 351 THR A 355 5 5 HELIX 13 AB4 LEU A 364 ALA A 368 5 5 HELIX 14 AB5 THR A 369 CYS A 387 1 19 HELIX 15 AB6 LYS B 12 LYS B 16 1 5 HELIX 16 AB7 PRO B 34 GLY B 42 1 9 HELIX 17 AB8 SER B 50 GLN B 69 1 20 HELIX 18 AB9 SER B 81 LEU B 94 1 14 HELIX 19 AC1 ILE B 107 GLY B 120 1 14 HELIX 20 AC2 SER B 223 TYR B 231 1 9 HELIX 21 AC3 ASP B 243 TRP B 251 1 9 HELIX 22 AC4 PRO B 265 GLY B 283 1 19 HELIX 23 AC5 GLY B 283 LEU B 305 1 23 HELIX 24 AC6 ASP B 331 ASP B 344 1 14 HELIX 25 AC7 LEU B 364 ALA B 368 5 5 HELIX 26 AC8 THR B 369 CYS B 387 1 19 SHEET 1 AA1 2 LEU A 24 LEU A 25 0 SHEET 2 AA1 2 ILE A 345 GLU A 346 1 O GLU A 346 N LEU A 24 SHEET 1 AA2 5 LEU A 74 ILE A 78 0 SHEET 2 AA2 5 SER A 218 PHE A 222 -1 O PHE A 222 N LEU A 74 SHEET 3 AA2 5 ILE A 202 GLY A 206 -1 N SER A 205 O LEU A 219 SHEET 4 AA2 5 LEU A 179 ASP A 183 1 N VAL A 182 O ILE A 202 SHEET 5 AA2 5 LEU A 150 THR A 154 1 N LEU A 153 O LEU A 181 SHEET 1 AA3 2 VAL A 321 ALA A 325 0 SHEET 2 AA3 2 VAL A 358 GLY A 362 -1 O ILE A 361 N THR A 322 SHEET 1 AA4 2 LEU B 24 LEU B 25 0 SHEET 2 AA4 2 ILE B 345 GLU B 346 1 O GLU B 346 N LEU B 24 SHEET 1 AA5 5 THR B 75 ILE B 78 0 SHEET 2 AA5 5 SER B 218 PHE B 222 -1 O ILE B 220 N LEU B 76 SHEET 3 AA5 5 ILE B 202 GLY B 206 -1 N SER B 205 O LEU B 219 SHEET 4 AA5 5 LEU B 179 ASP B 183 1 N VAL B 182 O ILE B 202 SHEET 5 AA5 5 LEU B 150 THR B 154 1 N LEU B 151 O LEU B 181 SHEET 1 AA6 2 VAL B 321 ALA B 325 0 SHEET 2 AA6 2 VAL B 358 GLY B 362 -1 O LEU B 359 N VAL B 324 LINK C GLN A 208 N LLP A 209 1555 1555 1.32 LINK C LLP A 209 N ALA A 210 1555 1555 1.33 LINK C GLN B 208 N LLP B 209 1555 1555 1.34 LINK C LLP B 209 N ALA B 210 1555 1555 1.33 CISPEP 1 GLY A 29 PRO A 30 0 -1.18 CISPEP 2 GLY B 29 PRO B 30 0 -11.89 CRYST1 90.590 90.590 140.858 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007099 0.00000