HEADER SIGNALING PROTEIN 09-MAR-21 7NT7 TITLE SOLUTION STRUCTURE OF TOLL LIKE RECEPTOR 1 (TLR1) TIR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOLL/INTERLEUKIN-1 RECEPTOR-LIKE PROTEIN,TIL; COMPND 5 EC: 3.2.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TLR1, KIAA0012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN, TLR, TOLL LIKE RECEPTOR, TIR DOMAIN, TLR1, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.S.MINEEV,V.A.LUSHPA,M.V.GONCHARUK REVDAT 4 19-JUN-24 7NT7 1 REMARK REVDAT 3 13-OCT-21 7NT7 1 JRNL REVDAT 2 29-SEP-21 7NT7 1 JRNL REVDAT 1 25-AUG-21 7NT7 0 JRNL AUTH V.A.LUSHPA,M.V.GONCHARUK,C.LIN,A.O.ZALEVSKY,I.A.TALYZINA, JRNL AUTH 2 A.P.LUGININA,D.D.VAKHRAMEEV,M.B.SHEVTSOV,S.A.GONCHARUK, JRNL AUTH 3 A.S.ARSENIEV,V.I.BORSHCHEVSKIY,X.WANG,K.S.MINEEV JRNL TITL MODULATION OF TOLL-LIKE RECEPTOR 1 INTRACELLULAR DOMAIN JRNL TITL 2 STRUCTURE AND ACTIVITY BY ZN 2+ IONS. JRNL REF COMMUN BIOL V. 4 1003 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 34429510 JRNL DOI 10.1038/S42003-021-02532-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114446. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT PA REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 TLR1-TIR, 20 MM PIPES, 25 MM REMARK 210 SODIUM CHLORIDE, 3 MM TCEP, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D 1H- REMARK 210 13C NOESY; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.9.1, QMDD 2.7, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 627 -178.21 -69.80 REMARK 500 1 GLU A 654 -60.46 -134.18 REMARK 500 1 ARG A 671 170.84 -53.24 REMARK 500 1 ASN A 672 74.17 63.63 REMARK 500 1 GLU A 705 46.64 -97.68 REMARK 500 1 THR A 754 39.94 -79.34 REMARK 500 2 PRO A 627 -178.84 -69.80 REMARK 500 2 GLU A 654 -58.32 -130.36 REMARK 500 2 ARG A 671 101.27 -56.10 REMARK 500 2 GLU A 705 49.91 -101.81 REMARK 500 2 HIS A 720 -169.45 -103.62 REMARK 500 2 GLU A 721 100.57 -56.17 REMARK 500 2 THR A 754 36.01 -84.89 REMARK 500 3 GLU A 654 -58.39 -133.63 REMARK 500 3 ASN A 672 110.98 -166.45 REMARK 500 3 LEU A 697 97.22 -57.69 REMARK 500 3 GLU A 705 47.53 -89.60 REMARK 500 3 THR A 754 32.13 -85.07 REMARK 500 3 LYS A 785 53.54 -103.62 REMARK 500 4 GLU A 654 -59.80 -134.39 REMARK 500 4 ASN A 672 109.03 -56.79 REMARK 500 4 GLU A 705 46.14 -95.80 REMARK 500 4 SER A 725 33.50 -142.28 REMARK 500 4 THR A 754 35.53 -83.75 REMARK 500 5 PRO A 627 -179.93 -69.75 REMARK 500 5 GLU A 654 -58.48 -128.80 REMARK 500 5 GLU A 670 61.38 63.79 REMARK 500 5 ARG A 671 -63.84 -133.00 REMARK 500 5 GLU A 705 46.94 -92.72 REMARK 500 5 HIS A 720 -169.51 -103.44 REMARK 500 5 THR A 754 35.71 -85.57 REMARK 500 5 ALA A 784 93.63 178.96 REMARK 500 5 LYS A 785 -74.72 -55.38 REMARK 500 6 GLU A 654 -59.72 -134.35 REMARK 500 6 GLU A 705 48.35 -100.77 REMARK 500 6 HIS A 720 -168.62 -101.75 REMARK 500 6 THR A 754 35.72 -85.58 REMARK 500 6 ALA A 784 -77.66 -96.97 REMARK 500 7 PRO A 627 -179.38 -69.74 REMARK 500 7 GLU A 654 -56.44 -131.29 REMARK 500 7 GLU A 705 47.04 -89.54 REMARK 500 7 THR A 754 36.94 -85.53 REMARK 500 8 GLU A 654 -58.93 -132.25 REMARK 500 8 ARG A 671 42.05 -99.13 REMARK 500 8 ASN A 672 78.61 -158.90 REMARK 500 8 GLU A 705 35.48 -96.15 REMARK 500 8 HIS A 720 -169.64 -102.14 REMARK 500 8 THR A 754 34.52 -85.77 REMARK 500 8 ALA A 784 144.59 -177.21 REMARK 500 8 LYS A 785 41.65 -102.84 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34610 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF TOLL LIKE RECEPTOR 1 (TLR1) TIR DOMAIN DBREF 7NT7 A 625 786 UNP Q15399 TLR1_HUMAN 625 786 SEQADV 7NT7 SER A 624 UNP Q15399 EXPRESSION TAG SEQRES 1 A 163 SER ASN ILE PRO LEU GLU GLU LEU GLN ARG ASN LEU GLN SEQRES 2 A 163 PHE HIS ALA PHE ILE SER TYR SER GLY HIS ASP SER PHE SEQRES 3 A 163 TRP VAL LYS ASN GLU LEU LEU PRO ASN LEU GLU LYS GLU SEQRES 4 A 163 GLY MET GLN ILE CYS LEU HIS GLU ARG ASN PHE VAL PRO SEQRES 5 A 163 GLY LYS SER ILE VAL GLU ASN ILE ILE THR CYS ILE GLU SEQRES 6 A 163 LYS SER TYR LYS SER ILE PHE VAL LEU SER PRO ASN PHE SEQRES 7 A 163 VAL GLN SER GLU TRP CYS HIS TYR GLU LEU TYR PHE ALA SEQRES 8 A 163 HIS HIS ASN LEU PHE HIS GLU GLY SER ASN SER LEU ILE SEQRES 9 A 163 LEU ILE LEU LEU GLU PRO ILE PRO GLN TYR SER ILE PRO SEQRES 10 A 163 SER SER TYR HIS LYS LEU LYS SER LEU MET ALA ARG ARG SEQRES 11 A 163 THR TYR LEU GLU TRP PRO LYS GLU LYS SER LYS ARG GLY SEQRES 12 A 163 LEU PHE TRP ALA ASN LEU ARG ALA ALA ILE ASN ILE LYS SEQRES 13 A 163 LEU THR GLU GLN ALA LYS LYS HELIX 1 AA1 SER A 644 HIS A 646 5 3 HELIX 2 AA2 ASP A 647 GLU A 654 1 8 HELIX 3 AA3 GLU A 654 GLU A 660 1 7 HELIX 4 AA4 LYS A 661 GLY A 663 5 3 HELIX 5 AA5 SER A 678 LYS A 689 1 12 HELIX 6 AA6 SER A 698 GLU A 705 1 8 HELIX 7 AA7 GLU A 705 HIS A 715 1 11 HELIX 8 AA8 TYR A 743 SER A 748 1 6 HELIX 9 AA9 LEU A 749 ALA A 751 5 3 HELIX 10 AB1 LYS A 764 ILE A 778 1 15 SHEET 1 AA1 5 ILE A 666 CYS A 667 0 SHEET 2 AA1 5 PHE A 637 SER A 642 1 N ALA A 639 O CYS A 667 SHEET 3 AA1 5 SER A 690 VAL A 696 1 O ILE A 694 N PHE A 640 SHEET 4 AA1 5 LEU A 726 LEU A 730 1 O ILE A 729 N PHE A 695 SHEET 5 AA1 5 LEU A 756 GLU A 757 1 O LEU A 756 N LEU A 730 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1