data_7NTN # _entry.id 7NTN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.354 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7NTN pdb_00007ntn 10.2210/pdb7ntn/pdb WWPDB D_1292114571 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7NTN _pdbx_database_status.recvd_initial_deposition_date 2021-03-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Davydova, E.' 1 0000-0002-3087-2163 'Janowski, R.' 2 0000-0002-9940-2143 'Witzenberger, M.' 3 0000-0002-9576-3523 'Niessing, D.' 4 0000-0002-5589-369X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country NE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Comput Struct Biotechnol J' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2001-0370 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 20 _citation.language ? _citation.page_first 443 _citation.page_last 458 _citation.title 'Small-molecule modulators of TRMT2A decrease PolyQ aggregation and PolyQ-induced cell death.' _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.csbj.2021.12.029 _citation.pdbx_database_id_PubMed 35070167 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Margreiter, M.A.' 1 ? primary 'Witzenberger, M.' 2 ? primary 'Wasser, Y.' 3 ? primary 'Davydova, E.' 4 ? primary 'Janowski, R.' 5 ? primary 'Metz, J.' 6 ? primary 'Habib, P.' 7 ? primary 'Sahnoun, S.E.M.' 8 ? primary 'Sobisch, C.' 9 ? primary 'Poma, B.' 10 ? primary 'Palomino-Hernandez, O.' 11 ? primary 'Wagner, M.' 12 ? primary 'Carell, T.' 13 ? primary 'Jon Shah, N.' 14 ? primary 'Schulz, J.B.' 15 ? primary 'Niessing, D.' 16 ? primary 'Voigt, A.' 17 ? primary 'Rossetti, G.' 18 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7NTN _cell.details ? _cell.formula_units_Z ? _cell.length_a 131.450 _cell.length_a_esd ? _cell.length_b 131.450 _cell.length_b_esd ? _cell.length_c 131.450 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 96 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7NTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'tRNA (uracil-5-)-methyltransferase homolog A' 9213.796 1 2.1.1.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 31 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HpaII tiny fragments locus 9c protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPTSEIFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKGRPLSVRLARP K ; _entity_poly.pdbx_seq_one_letter_code_can ;GPTSEIFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKGRPLSVRLARP K ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 THR n 1 4 SER n 1 5 GLU n 1 6 ILE n 1 7 PHE n 1 8 LYS n 1 9 LEU n 1 10 GLU n 1 11 LEU n 1 12 GLN n 1 13 ASN n 1 14 VAL n 1 15 PRO n 1 16 ARG n 1 17 HIS n 1 18 ALA n 1 19 SER n 1 20 PHE n 1 21 SER n 1 22 ASP n 1 23 VAL n 1 24 ARG n 1 25 ARG n 1 26 PHE n 1 27 LEU n 1 28 GLY n 1 29 ARG n 1 30 PHE n 1 31 GLY n 1 32 LEU n 1 33 GLN n 1 34 PRO n 1 35 HIS n 1 36 LYS n 1 37 THR n 1 38 LYS n 1 39 LEU n 1 40 PHE n 1 41 GLY n 1 42 GLN n 1 43 PRO n 1 44 PRO n 1 45 CYS n 1 46 ALA n 1 47 PHE n 1 48 VAL n 1 49 THR n 1 50 PHE n 1 51 ARG n 1 52 SER n 1 53 ALA n 1 54 ALA n 1 55 GLU n 1 56 ARG n 1 57 ASP n 1 58 LYS n 1 59 ALA n 1 60 LEU n 1 61 ARG n 1 62 VAL n 1 63 LEU n 1 64 HIS n 1 65 GLY n 1 66 ALA n 1 67 LEU n 1 68 TRP n 1 69 LYS n 1 70 GLY n 1 71 ARG n 1 72 PRO n 1 73 LEU n 1 74 SER n 1 75 VAL n 1 76 ARG n 1 77 LEU n 1 78 ALA n 1 79 ARG n 1 80 PRO n 1 81 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 81 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'TRMT2A, HTF9C' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TRM2A_HUMAN _struct_ref.pdbx_db_accession Q8IZ69 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code TSEIFKLELQNVPRHASFSDVRRFLGRFGLQPHKTKLFGQPPCAFVTFRSAAERDKALRVLHGALWKGRPLSVRLARPK _struct_ref.pdbx_align_begin 69 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7NTN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8IZ69 _struct_ref_seq.db_align_beg 69 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 69 _struct_ref_seq.pdbx_auth_seq_align_end 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 7NTN GLY A 1 ? UNP Q8IZ69 ? ? 'expression tag' 67 1 1 7NTN PRO A 2 ? UNP Q8IZ69 ? ? 'expression tag' 68 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7NTN _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.57 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.22M lithium sulfate, 0.1M sodium acetate (pH 4.5) and 26 % PEG 6000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-07-16 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.009300 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PETRA III, DESY BEAMLINE P11' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.009300 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline P11 _diffrn_source.pdbx_synchrotron_site 'PETRA III, DESY' # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7NTN _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.016 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6872 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 29.45 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 36.42 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.016 _reflns_shell.d_res_low 2.07 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.85 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1079 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.92 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 160.090 _refine.B_iso_mean 52.1131 _refine.B_iso_min 24.300 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7NTN _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0160 _refine.ls_d_res_low 46.4750 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6872 _refine.ls_number_reflns_R_free 360 _refine.ls_number_reflns_R_work 6512 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.0000 _refine.ls_percent_reflns_R_free 5.2400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2072 _refine.ls_R_factor_R_free 0.2514 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2051 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model sequence _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.7300 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.0160 _refine_hist.d_res_low 46.4750 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 684 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 77 _refine_hist.pdbx_B_iso_mean_ligand 84.23 _refine_hist.pdbx_B_iso_mean_solvent 53.20 _refine_hist.pdbx_number_atoms_protein 624 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 689 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.975 ? 938 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.048 ? 98 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 ? 118 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 15.363 ? 564 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0161 2.3078 . . 132 2072 100.0000 . . . 0.3022 0.0000 0.2229 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.3078 2.9076 . . 119 2128 100.0000 . . . 0.2789 0.0000 0.2605 . . . . . . . . . . . # _struct.entry_id 7NTN _struct.title 'The structure of RRM domain of human TRMT2A at 2 A resolution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7NTN _struct_keywords.text 'tRNA binding, methyltransferase, TRMT2a, polyQ aggregation, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 4 ? ILE A 6 ? SER A 70 ILE A 72 5 ? 3 HELX_P HELX_P2 AA2 SER A 19 ? ARG A 29 ? SER A 85 ARG A 95 1 ? 11 HELX_P HELX_P3 AA3 SER A 52 ? LEU A 63 ? SER A 118 LEU A 129 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 42 A . ? GLN 108 A PRO 43 A ? PRO 109 A 1 -2.42 2 ARG 79 A . ? ARG 145 A PRO 80 A ? PRO 146 A 1 -4.85 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 36 ? PHE A 40 ? LYS A 102 PHE A 106 AA1 2 CYS A 45 ? THR A 49 ? CYS A 111 THR A 115 AA1 3 LYS A 8 ? GLN A 12 ? LYS A 74 GLN A 78 AA1 4 SER A 74 ? LEU A 77 ? SER A 140 LEU A 143 AA2 1 LEU A 67 ? TRP A 68 ? LEU A 133 TRP A 134 AA2 2 ARG A 71 ? PRO A 72 ? ARG A 137 PRO A 138 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 38 ? N LYS A 104 O PHE A 47 ? O PHE A 113 AA1 2 3 O ALA A 46 ? O ALA A 112 N LEU A 11 ? N LEU A 77 AA1 3 4 N GLU A 10 ? N GLU A 76 O ARG A 76 ? O ARG A 142 AA2 1 2 N TRP A 68 ? N TRP A 134 O ARG A 71 ? O ARG A 137 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 201 ? 5 'binding site for residue SO4 A 201' AC2 Software A SO4 202 ? 8 'binding site for residue SO4 A 202' AC3 Software A SO4 203 ? 5 'binding site for residue SO4 A 203' AC4 Software A SO4 204 ? 3 'binding site for residue SO4 A 204' AC5 Software A CL 205 ? 6 'binding site for residue CL A 205' AC6 Software A CL 206 ? 1 'binding site for residue CL A 206' AC7 Software A CL 207 ? 3 'binding site for residue CL A 207' AC8 Software A NA 208 ? 2 'binding site for residue NA A 208' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ALA A 53 ? ALA A 119 . ? 1_555 ? 2 AC1 5 ALA A 53 ? ALA A 119 . ? 79_555 ? 3 AC1 5 ARG A 56 ? ARG A 122 . ? 79_555 ? 4 AC1 5 ARG A 56 ? ARG A 122 . ? 58_555 ? 5 AC1 5 ARG A 56 ? ARG A 122 . ? 1_555 ? 6 AC2 8 PHE A 20 ? PHE A 86 . ? 69_555 ? 7 AC2 8 SER A 21 ? SER A 87 . ? 69_555 ? 8 AC2 8 ARG A 24 ? ARG A 90 . ? 69_555 ? 9 AC2 8 ARG A 29 ? ARG A 95 . ? 1_555 ? 10 AC2 8 TRP A 68 ? TRP A 134 . ? 1_555 ? 11 AC2 8 LYS A 69 ? LYS A 135 . ? 1_555 ? 12 AC2 8 HOH J . ? HOH A 304 . ? 1_555 ? 13 AC2 8 HOH J . ? HOH A 310 . ? 1_555 ? 14 AC3 5 ARG A 24 ? ARG A 90 . ? 1_555 ? 15 AC3 5 ARG A 25 ? ARG A 91 . ? 1_555 ? 16 AC3 5 ARG A 25 ? ARG A 91 . ? 71_554 ? 17 AC3 5 ARG A 29 ? ARG A 95 . ? 71_554 ? 18 AC3 5 HOH J . ? HOH A 313 . ? 71_554 ? 19 AC4 3 SER A 21 ? SER A 87 . ? 1_555 ? 20 AC4 3 ARG A 25 ? ARG A 91 . ? 1_555 ? 21 AC4 3 LYS A 69 ? LYS A 135 . ? 71_554 ? 22 AC5 6 GLY A 41 ? GLY A 107 . ? 35_555 ? 23 AC5 6 GLY A 41 ? GLY A 107 . ? 56_555 ? 24 AC5 6 GLY A 41 ? GLY A 107 . ? 1_555 ? 25 AC5 6 HOH J . ? HOH A 328 . ? 35_555 ? 26 AC5 6 HOH J . ? HOH A 328 . ? 56_555 ? 27 AC5 6 HOH J . ? HOH A 328 . ? 1_555 ? 28 AC6 1 LYS A 69 ? LYS A 135 . ? 1_555 ? 29 AC7 3 ARG A 16 ? ARG A 82 . ? 1_555 ? 30 AC7 3 ARG A 71 ? ARG A 137 . ? 1_555 ? 31 AC7 3 NA I . ? NA A 208 . ? 1_555 ? 32 AC8 2 ARG A 16 ? ARG A 82 . ? 43_655 ? 33 AC8 2 CL H . ? CL A 207 . ? 1_555 ? # _atom_sites.entry_id 7NTN _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.007607 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007607 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007607 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CL N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 67 ? ? ? A . n A 1 2 PRO 2 68 ? ? ? A . n A 1 3 THR 3 69 ? ? ? A . n A 1 4 SER 4 70 70 SER SER A . n A 1 5 GLU 5 71 71 GLU GLU A . n A 1 6 ILE 6 72 72 ILE ILE A . n A 1 7 PHE 7 73 73 PHE PHE A . n A 1 8 LYS 8 74 74 LYS LYS A . n A 1 9 LEU 9 75 75 LEU LEU A . n A 1 10 GLU 10 76 76 GLU GLU A . n A 1 11 LEU 11 77 77 LEU LEU A . n A 1 12 GLN 12 78 78 GLN GLN A . n A 1 13 ASN 13 79 79 ASN ASN A . n A 1 14 VAL 14 80 80 VAL VAL A . n A 1 15 PRO 15 81 81 PRO PRO A . n A 1 16 ARG 16 82 82 ARG ARG A . n A 1 17 HIS 17 83 83 HIS HIS A . n A 1 18 ALA 18 84 84 ALA ALA A . n A 1 19 SER 19 85 85 SER SER A . n A 1 20 PHE 20 86 86 PHE PHE A . n A 1 21 SER 21 87 87 SER SER A . n A 1 22 ASP 22 88 88 ASP ASP A . n A 1 23 VAL 23 89 89 VAL VAL A . n A 1 24 ARG 24 90 90 ARG ARG A . n A 1 25 ARG 25 91 91 ARG ARG A . n A 1 26 PHE 26 92 92 PHE PHE A . n A 1 27 LEU 27 93 93 LEU LEU A . n A 1 28 GLY 28 94 94 GLY GLY A . n A 1 29 ARG 29 95 95 ARG ARG A . n A 1 30 PHE 30 96 96 PHE PHE A . n A 1 31 GLY 31 97 97 GLY GLY A . n A 1 32 LEU 32 98 98 LEU LEU A . n A 1 33 GLN 33 99 99 GLN GLN A . n A 1 34 PRO 34 100 100 PRO PRO A . n A 1 35 HIS 35 101 101 HIS HIS A . n A 1 36 LYS 36 102 102 LYS LYS A . n A 1 37 THR 37 103 103 THR THR A . n A 1 38 LYS 38 104 104 LYS LYS A . n A 1 39 LEU 39 105 105 LEU LEU A . n A 1 40 PHE 40 106 106 PHE PHE A . n A 1 41 GLY 41 107 107 GLY GLY A . n A 1 42 GLN 42 108 108 GLN GLN A . n A 1 43 PRO 43 109 109 PRO PRO A . n A 1 44 PRO 44 110 110 PRO PRO A . n A 1 45 CYS 45 111 111 CYS CYS A . n A 1 46 ALA 46 112 112 ALA ALA A . n A 1 47 PHE 47 113 113 PHE PHE A . n A 1 48 VAL 48 114 114 VAL VAL A . n A 1 49 THR 49 115 115 THR THR A . n A 1 50 PHE 50 116 116 PHE PHE A . n A 1 51 ARG 51 117 117 ARG ARG A . n A 1 52 SER 52 118 118 SER SER A . n A 1 53 ALA 53 119 119 ALA ALA A . n A 1 54 ALA 54 120 120 ALA ALA A . n A 1 55 GLU 55 121 121 GLU GLU A . n A 1 56 ARG 56 122 122 ARG ARG A . n A 1 57 ASP 57 123 123 ASP ASP A . n A 1 58 LYS 58 124 124 LYS LYS A . n A 1 59 ALA 59 125 125 ALA ALA A . n A 1 60 LEU 60 126 126 LEU LEU A . n A 1 61 ARG 61 127 127 ARG ARG A . n A 1 62 VAL 62 128 128 VAL VAL A . n A 1 63 LEU 63 129 129 LEU LEU A . n A 1 64 HIS 64 130 130 HIS HIS A . n A 1 65 GLY 65 131 131 GLY GLY A . n A 1 66 ALA 66 132 132 ALA ALA A . n A 1 67 LEU 67 133 133 LEU LEU A . n A 1 68 TRP 68 134 134 TRP TRP A . n A 1 69 LYS 69 135 135 LYS LYS A . n A 1 70 GLY 70 136 136 GLY GLY A . n A 1 71 ARG 71 137 137 ARG ARG A . n A 1 72 PRO 72 138 138 PRO PRO A . n A 1 73 LEU 73 139 139 LEU LEU A . n A 1 74 SER 74 140 140 SER SER A . n A 1 75 VAL 75 141 141 VAL VAL A . n A 1 76 ARG 76 142 142 ARG ARG A . n A 1 77 LEU 77 143 143 LEU LEU A . n A 1 78 ALA 78 144 144 ALA ALA A . n A 1 79 ARG 79 145 145 ARG ARG A . n A 1 80 PRO 80 146 146 PRO PRO A . n A 1 81 LYS 81 147 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 201 1 SO4 SO4 A . C 2 SO4 1 202 2 SO4 SO4 A . D 2 SO4 1 203 3 SO4 SO4 A . E 2 SO4 1 204 4 SO4 SO4 A . F 3 CL 1 205 6 CL CL A . G 3 CL 1 206 9 CL CL A . H 3 CL 1 207 11 CL CL A . I 4 NA 1 208 1 NA NA A . J 5 HOH 1 301 102 HOH HOH A . J 5 HOH 2 302 69 HOH HOH A . J 5 HOH 3 303 75 HOH HOH A . J 5 HOH 4 304 107 HOH HOH A . J 5 HOH 5 305 8 HOH HOH A . J 5 HOH 6 306 103 HOH HOH A . J 5 HOH 7 307 4 HOH HOH A . J 5 HOH 8 308 68 HOH HOH A . J 5 HOH 9 309 30 HOH HOH A . J 5 HOH 10 310 51 HOH HOH A . J 5 HOH 11 311 14 HOH HOH A . J 5 HOH 12 312 12 HOH HOH A . J 5 HOH 13 313 53 HOH HOH A . J 5 HOH 14 314 13 HOH HOH A . J 5 HOH 15 315 17 HOH HOH A . J 5 HOH 16 316 56 HOH HOH A . J 5 HOH 17 317 78 HOH HOH A . J 5 HOH 18 318 98 HOH HOH A . J 5 HOH 19 319 97 HOH HOH A . J 5 HOH 20 320 95 HOH HOH A . J 5 HOH 21 321 99 HOH HOH A . J 5 HOH 22 322 36 HOH HOH A . J 5 HOH 23 323 77 HOH HOH A . J 5 HOH 24 324 101 HOH HOH A . J 5 HOH 25 325 80 HOH HOH A . J 5 HOH 26 326 91 HOH HOH A . J 5 HOH 27 327 9 HOH HOH A . J 5 HOH 28 328 72 HOH HOH A . J 5 HOH 29 329 81 HOH HOH A . J 5 HOH 30 330 92 HOH HOH A . J 5 HOH 31 331 100 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 44210 ? 1 MORE -1069 ? 1 'SSA (A^2)' 82210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 13_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 6 'crystal symmetry operation' 14_665 -y+1,-x+1,-z 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 7 'crystal symmetry operation' 15_565 y,-x+1,z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 8 'crystal symmetry operation' 16_655 -y+1,x,z 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 9 'crystal symmetry operation' 33_554 y,z+1/2,x-1/2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 65.7250000000 1.0000000000 0.0000000000 0.0000000000 -65.7250000000 10 'crystal symmetry operation' 34_655 -y+1,z+1/2,-x+1/2 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 1.0000000000 65.7250000000 -1.0000000000 0.0000000000 0.0000000000 65.7250000000 11 'crystal symmetry operation' 35_555 y,-z+1/2,-x+1/2 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 -1.0000000000 0.0000000000 0.0000000000 65.7250000000 12 'crystal symmetry operation' 36_654 -y+1,-z+1/2,x-1/2 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 1.0000000000 0.0000000000 0.0000000000 -65.7250000000 13 'crystal symmetry operation' 41_555 x,z+1/2,-y+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 65.7250000000 0.0000000000 -1.0000000000 0.0000000000 65.7250000000 14 'crystal symmetry operation' 42_654 -x+1,z+1/2,y-1/2 -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 1.0000000000 65.7250000000 0.0000000000 1.0000000000 0.0000000000 -65.7250000000 15 'crystal symmetry operation' 43_655 -x+1,-z+1/2,-y+1/2 -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 0.0000000000 -1.0000000000 0.0000000000 65.7250000000 16 'crystal symmetry operation' 44_554 x,-z+1/2,y-1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 0.0000000000 1.0000000000 0.0000000000 -65.7250000000 17 'crystal symmetry operation' 53_554 z+1/2,x,y-1/2 0.0000000000 0.0000000000 1.0000000000 65.7250000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -65.7250000000 18 'crystal symmetry operation' 54_565 z+1/2,-x+1,-y+1/2 0.0000000000 0.0000000000 1.0000000000 65.7250000000 -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 -1.0000000000 0.0000000000 65.7250000000 19 'crystal symmetry operation' 55_564 -z+1/2,-x+1,y-1/2 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 -1.0000000000 0.0000000000 0.0000000000 131.4500000000 0.0000000000 1.0000000000 0.0000000000 -65.7250000000 20 'crystal symmetry operation' 56_555 -z+1/2,x,-y+1/2 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 65.7250000000 21 'crystal symmetry operation' 69_555 z+1/2,y,-x+1/2 0.0000000000 0.0000000000 1.0000000000 65.7250000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 65.7250000000 22 'crystal symmetry operation' 70_564 z+1/2,-y+1,x-1/2 0.0000000000 0.0000000000 1.0000000000 65.7250000000 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 1.0000000000 0.0000000000 0.0000000000 -65.7250000000 23 'crystal symmetry operation' 71_554 -z+1/2,y,x-1/2 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -65.7250000000 24 'crystal symmetry operation' 72_565 -z+1/2,-y+1,-x+1/2 0.0000000000 0.0000000000 -1.0000000000 65.7250000000 0.0000000000 -1.0000000000 0.0000000000 131.4500000000 -1.0000000000 0.0000000000 0.0000000000 65.7250000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 201 ? B SO4 . 2 1 A CL 205 ? F CL . 3 1 A HOH 322 ? J HOH . 4 1 A HOH 329 ? J HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-01-19 2 'Structure model' 1 1 2022-02-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 55.5760 _pdbx_refine_tls.origin_y 34.0871 _pdbx_refine_tls.origin_z 15.2121 _pdbx_refine_tls.T[1][1] 0.3167 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0548 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0767 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.3005 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0165 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.2542 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 2.2568 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] -0.1840 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -1.6380 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 1.2317 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 0.8929 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 1.6543 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0467 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.1747 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] -0.0441 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] -0.0070 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] 0.0877 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] -0.0661 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.0527 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] 0.2028 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0005 _pdbx_refine_tls.S[3][3]_esd ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 70 ? ? ? A 146 ? ? all 2 'X-RAY DIFFRACTION' 1 ? ? Z 4 ? ? ? Z 107 ? ? all 3 'X-RAY DIFFRACTION' 1 ? ? B 1 ? ? ? B 4 ? ? all 4 'X-RAY DIFFRACTION' 1 ? ? D 6 ? ? ? D 11 ? ? all 5 'X-RAY DIFFRACTION' 1 ? ? C 1 ? ? ? C 1 ? ? all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.12_2829 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? Auto-Rickshaw ? ? ? . 5 # _pdbx_entry_details.entry_id 7NTN _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 330 ? 5.85 . 2 1 O ? A HOH 331 ? 7.61 . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 67 ? A GLY 1 2 1 Y 1 A PRO 68 ? A PRO 2 3 1 Y 1 A THR 69 ? A THR 3 4 1 Y 1 A LYS 147 ? A LYS 81 # _pdbx_audit_support.funding_organization 'German Federal Ministry for Education and Research' _pdbx_audit_support.country Germany _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 'CHLORIDE ION' CL 4 'SODIUM ION' NA 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #