HEADER PROTEIN BINDING 21-MAR-21 7NY8 TITLE AFFIMER K69 - KRAS PROTEIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE KRAS; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K-RAS 2,KI-RAS,C-K-RAS,C-KI-RAS; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AFFIMER K69; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KRAS, KRAS2, RASK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN COMPLEX, AFFIMER, KRAS, INHIBITOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.L.TURNER,C.H.TRINH,K.Z.HAZA,A.RAO,H.L.MARTIN,C.TIEDE,T.A.EDWARDS, AUTHOR 2 M.J.MCPHERSON,D.C.TOMLINSON REVDAT 3 31-JAN-24 7NY8 1 REMARK REVDAT 2 14-JUL-21 7NY8 1 JRNL REVDAT 1 07-JUL-21 7NY8 0 JRNL AUTH K.Z.HAZA,H.L.MARTIN,A.RAO,A.L.TURNER,S.E.SAUNDERS, JRNL AUTH 2 B.PETERSEN,C.TIEDE,K.TIPPING,A.A.TANG,M.AJAYI,T.TAYLOR, JRNL AUTH 3 M.HARVEY,K.M.FISHWICK,T.L.ADAMS,T.G.GAULE,C.H.TRINH, JRNL AUTH 4 M.JOHNSON,A.L.BREEZE,T.A.EDWARDS,M.J.MCPHERSON,D.C.TOMLINSON JRNL TITL RAS-INHIBITING BIOLOGICS IDENTIFY AND PROBE DRUGGABLE JRNL TITL 2 POCKETS INCLUDING AN SII-ALPHA 3 ALLOSTERIC SITE. JRNL REF NAT COMMUN V. 12 4045 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34193876 JRNL DOI 10.1038/S41467-021-24316-0 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2378 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.314 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4402 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4024 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5919 ; 1.314 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9339 ; 1.223 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 518 ; 6.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;30.552 ;22.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;12.334 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4850 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 930 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8426 ; 1.304 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7NY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 3.1.3 REMARK 200 DATA SCALING SOFTWARE : DIALS 3.1.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 168.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4OBE, 4N6T REMARK 200 REMARK 200 REMARK: 46.20% REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M IMIDAZOLE, 0.1M MES MONOHYDRATE, REMARK 280 20% W/V PEG 500 MME, 10% W/V PEG 20000, 0.12M 1,6-HEXANEDIOL, REMARK 280 0.12M 1,2-PROPANEDIOL, 0.12M 1,4-BUTANEDIOL, 0.12M 1-BUTANOL, REMARK 280 0.12M 2-PROPANOL, 0.12M 1,3-PROPANEDIOL, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 84.38750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 LYS B 167 REMARK 465 MET C 1 REMARK 465 GLY C 93 REMARK 465 ASP C 94 REMARK 465 ALA C 95 REMARK 465 ALA C 96 REMARK 465 ALA C 97 REMARK 465 ALA C 98 REMARK 465 HIS C 99 REMARK 465 HIS C 100 REMARK 465 HIS C 101 REMARK 465 HIS C 102 REMARK 465 HIS C 103 REMARK 465 HIS C 104 REMARK 465 HIS C 105 REMARK 465 HIS C 106 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 3 REMARK 465 ASN D 4 REMARK 465 ALA D 97 REMARK 465 ALA D 98 REMARK 465 HIS D 99 REMARK 465 HIS D 100 REMARK 465 HIS D 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 106 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 117 35.70 70.41 REMARK 500 SER A 122 32.55 -89.33 REMARK 500 ASP B 108 70.28 -115.37 REMARK 500 LYS B 117 35.26 71.60 REMARK 500 ARG B 149 1.56 82.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O2B 90.6 REMARK 620 3 HOH A 304 O 81.3 93.9 REMARK 620 4 HOH A 325 O 91.1 172.0 94.1 REMARK 620 5 HOH A 337 O 174.0 88.4 92.8 90.7 REMARK 620 6 HOH A 338 O 90.3 85.6 171.6 86.6 95.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 GDP B 201 O3B 88.0 REMARK 620 3 HOH B 304 O 90.4 174.9 REMARK 620 4 HOH B 306 O 82.2 95.1 89.5 REMARK 620 5 HOH B 307 O 88.9 85.4 89.7 171.1 REMARK 620 6 HOH B 326 O 171.6 88.8 93.4 90.3 98.5 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YR8 RELATED DB: PDB REMARK 900 RELATED ID: 6YXW RELATED DB: PDB DBREF 7NY8 A 1 167 UNP P01116 RASK_HUMAN 1 167 DBREF 7NY8 B 1 167 UNP P01116 RASK_HUMAN 1 167 DBREF 7NY8 C 1 106 PDB 7NY8 7NY8 1 106 DBREF 7NY8 D 1 106 PDB 7NY8 7NY8 1 106 SEQADV 7NY8 GLY A -2 UNP P01116 EXPRESSION TAG SEQADV 7NY8 SER A -1 UNP P01116 EXPRESSION TAG SEQADV 7NY8 HIS A 0 UNP P01116 EXPRESSION TAG SEQADV 7NY8 GLY B -2 UNP P01116 EXPRESSION TAG SEQADV 7NY8 SER B -1 UNP P01116 EXPRESSION TAG SEQADV 7NY8 HIS B 0 UNP P01116 EXPRESSION TAG SEQRES 1 A 170 GLY SER HIS MET THR GLU TYR LYS LEU VAL VAL VAL GLY SEQRES 2 A 170 ALA GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU SEQRES 3 A 170 ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE SEQRES 4 A 170 GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU SEQRES 5 A 170 THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU SEQRES 6 A 170 GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG THR GLY SEQRES 7 A 170 GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SEQRES 8 A 170 SER PHE GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS SEQRES 9 A 170 ARG VAL LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL SEQRES 10 A 170 GLY ASN LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR SEQRES 11 A 170 LYS GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO SEQRES 12 A 170 PHE ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP SEQRES 13 A 170 ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 14 A 170 LYS SEQRES 1 B 170 GLY SER HIS MET THR GLU TYR LYS LEU VAL VAL VAL GLY SEQRES 2 B 170 ALA GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU SEQRES 3 B 170 ILE GLN ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE SEQRES 4 B 170 GLU ASP SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU SEQRES 5 B 170 THR CYS LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU SEQRES 6 B 170 GLU TYR SER ALA MET ARG ASP GLN TYR MET ARG THR GLY SEQRES 7 B 170 GLU GLY PHE LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SEQRES 8 B 170 SER PHE GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS SEQRES 9 B 170 ARG VAL LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL SEQRES 10 B 170 GLY ASN LYS CYS ASP LEU PRO SER ARG THR VAL ASP THR SEQRES 11 B 170 LYS GLN ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO SEQRES 12 B 170 PHE ILE GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP SEQRES 13 B 170 ASP ALA PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS SEQRES 14 B 170 LYS SEQRES 1 C 106 MET ALA SER ASN SER LEU GLU ILE GLU GLU LEU ALA ARG SEQRES 2 C 106 PHE ALA VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU SEQRES 3 C 106 LEU GLU PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN TRP SEQRES 4 C 106 HIS PHE ASP TYR GLN GLN TYR ASN THR MET TYR TYR LEU SEQRES 5 C 106 THR LEU GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR SEQRES 6 C 106 GLU ALA LYS VAL TRP VAL LYS ARG GLN LEU ARG MET GLY SEQRES 7 C 106 SER MET ASN ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO SEQRES 8 C 106 VAL GLY ASP ALA ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 9 C 106 HIS HIS SEQRES 1 D 106 MET ALA SER ASN SER LEU GLU ILE GLU GLU LEU ALA ARG SEQRES 2 D 106 PHE ALA VAL ASP GLU HIS ASN LYS LYS GLU ASN ALA LEU SEQRES 3 D 106 LEU GLU PHE VAL ARG VAL VAL LYS ALA LYS GLU GLN TRP SEQRES 4 D 106 HIS PHE ASP TYR GLN GLN TYR ASN THR MET TYR TYR LEU SEQRES 5 D 106 THR LEU GLU ALA LYS ASP GLY GLY LYS LYS LYS LEU TYR SEQRES 6 D 106 GLU ALA LYS VAL TRP VAL LYS ARG GLN LEU ARG MET GLY SEQRES 7 D 106 SER MET ASN ASN PHE LYS GLU LEU GLN GLU PHE LYS PRO SEQRES 8 D 106 VAL GLY ASP ALA ALA ALA ALA HIS HIS HIS HIS HIS HIS SEQRES 9 D 106 HIS HIS HET GDP A 201 28 HET MG A 202 1 HET GDP B 201 28 HET MG B 202 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 5 GDP 2(C10 H15 N5 O11 P2) FORMUL 6 MG 2(MG 2+) FORMUL 9 HOH *258(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 SER A 65 GLY A 75 1 11 HELIX 3 AA3 ASN A 86 ASP A 92 1 7 HELIX 4 AA4 ASP A 92 ASP A 105 1 14 HELIX 5 AA5 ASP A 126 GLY A 138 1 13 HELIX 6 AA6 GLY A 151 LYS A 167 1 17 HELIX 7 AA7 GLY B 15 ASN B 26 1 12 HELIX 8 AA8 SER B 65 GLY B 75 1 11 HELIX 9 AA9 ASN B 86 ASP B 92 1 7 HELIX 10 AB1 ASP B 92 ASP B 105 1 14 HELIX 11 AB2 ASP B 126 GLY B 138 1 13 HELIX 12 AB3 GLY B 151 HIS B 166 1 16 HELIX 13 AB4 GLU C 7 ASN C 24 1 18 HELIX 14 AB5 LEU D 6 ASN D 24 1 19 SHEET 1 AA1 6 ASP A 38 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O LEU A 53 N LYS A 42 SHEET 3 AA1 6 THR A 2 VAL A 9 1 N VAL A 8 O LEU A 56 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 9 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 ASP B 38 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O CYS B 51 N VAL B 44 SHEET 3 AA2 6 GLU B 3 VAL B 9 1 N LEU B 6 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 AA2 6 PHE B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 5 SER C 79 PRO C 91 0 SHEET 2 AA3 5 LYS C 61 ARG C 76 -1 N LYS C 68 O GLN C 87 SHEET 3 AA3 5 GLN C 45 ASP C 58 -1 N LEU C 52 O ALA C 67 SHEET 4 AA3 5 GLU C 28 ASP C 42 -1 N VAL C 33 O THR C 53 SHEET 5 AA3 5 HIS D 104 HIS D 106 1 O HIS D 104 N ALA C 35 SHEET 1 AA4 4 GLU D 28 ASP D 42 0 SHEET 2 AA4 4 GLN D 45 ASP D 58 -1 O THR D 53 N VAL D 33 SHEET 3 AA4 4 LYS D 61 ARG D 76 -1 O VAL D 69 N TYR D 50 SHEET 4 AA4 4 SER D 79 PRO D 91 -1 O GLN D 87 N LYS D 68 LINK OG SER A 17 MG MG A 202 1555 1555 2.07 LINK O2B GDP A 201 MG MG A 202 1555 1555 2.06 LINK MG MG A 202 O HOH A 304 1555 1555 2.12 LINK MG MG A 202 O HOH A 325 1555 1555 2.13 LINK MG MG A 202 O HOH A 337 1555 1555 2.14 LINK MG MG A 202 O HOH A 338 1555 1555 2.14 LINK OG SER B 17 MG MG B 202 1555 1555 2.08 LINK O3B GDP B 201 MG MG B 202 1555 1555 2.06 LINK MG MG B 202 O HOH B 304 1555 1555 2.14 LINK MG MG B 202 O HOH B 306 1555 1555 2.13 LINK MG MG B 202 O HOH B 307 1555 1555 2.14 LINK MG MG B 202 O HOH B 326 1555 1555 2.14 CRYST1 39.008 168.775 39.653 90.00 92.70 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025636 0.000000 0.001209 0.00000 SCALE2 0.000000 0.005925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025247 0.00000