HEADER ANTIMICROBIAL PROTEIN 22-MAR-21 7NYI TITLE BACSP222 BACTERIOCIN: SUCCINYL-K20 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOCIN BACSP222; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS PSEUDINTERMEDIUS; SOURCE 3 ORGANISM_TAXID: 283734 KEYWDS PEPTIDE BACTERIOCIN, SUCCINYLATION, ANTIMICROBIAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.NOWAKOWSKI,P.MAK,J.SMIALEK REVDAT 2 14-JUL-21 7NYI 1 JRNL REVDAT 1 07-JUL-21 7NYI 0 JRNL AUTH J.SMIALEK,M.NOWAKOWSKI,M.BZOWSKA,O.BOCHENSKA,A.WLIZLO, JRNL AUTH 2 A.KOZIK,G.DUBIN,P.MAK JRNL TITL STRUCTURE, BIOSYNTHESIS, AND BIOLOGICAL ACTIVITY OF JRNL TITL 2 SUCCINYLATED FORMS OF BACTERIOCIN BACSP222. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34200765 JRNL DOI 10.3390/IJMS22126256 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.42 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114453. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM BACSP222 BACTERIOCIN: REMARK 210 SUCCINYL-K20 FORM, 100 MM [U-100% REMARK 210 2H] SODIUM ACETATE, 90 % H2O, REMARK 210 10 % D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H TOCSY; 2D 1H- REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : UNIFORM NMR SYSTEM REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, CYANA 3.98.13, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 SLL A 20 -82.32 22.65 REMARK 500 3 VAL A 23 46.33 -84.54 REMARK 500 3 LYS A 31 -13.60 -46.65 REMARK 500 3 ALA A 34 -173.98 85.31 REMARK 500 4 SLL A 20 -93.85 48.12 REMARK 500 4 ALA A 34 179.71 51.36 REMARK 500 5 SLL A 20 -72.88 -42.58 REMARK 500 5 SER A 21 134.11 59.70 REMARK 500 6 ALA A 2 -39.46 72.32 REMARK 500 6 SLL A 20 72.47 -59.27 REMARK 500 6 HIS A 22 14.81 50.87 REMARK 500 8 SLL A 20 45.25 -70.78 REMARK 500 9 SLL A 20 14.45 -62.39 REMARK 500 9 ALA A 34 171.65 66.91 REMARK 500 9 TRP A 49 169.72 50.40 REMARK 500 10 LYS A 11 82.70 41.25 REMARK 500 10 SLL A 20 -25.04 -36.72 REMARK 500 11 SLL A 20 57.54 -66.32 REMARK 500 12 ALA A 2 -77.62 50.77 REMARK 500 12 SLL A 20 16.06 -140.25 REMARK 500 12 HIS A 22 -86.66 -102.52 REMARK 500 12 LEU A 47 78.45 -100.16 REMARK 500 12 TRP A 49 19.82 42.45 REMARK 500 14 ALA A 2 -146.78 29.50 REMARK 500 14 ALA A 34 169.28 177.56 REMARK 500 16 SLL A 20 136.22 56.07 REMARK 500 16 SER A 21 169.09 50.40 REMARK 500 17 SLL A 20 -118.81 29.74 REMARK 500 17 SER A 21 39.31 -161.76 REMARK 500 17 ALA A 34 -172.68 -173.69 REMARK 500 18 SLL A 20 107.12 -49.87 REMARK 500 19 SLL A 20 -118.44 28.19 REMARK 500 19 SER A 21 41.34 179.33 REMARK 500 19 ALA A 34 -179.31 -53.18 REMARK 500 20 SLL A 20 -106.64 32.08 REMARK 500 20 SER A 21 -8.25 -169.26 REMARK 500 20 VAL A 23 42.57 -106.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34614 RELATED DB: BMRB REMARK 900 BACSP222 BACTERIOCIN: SUCCINYL-K20 FORM DBREF1 7NYI A 1 50 UNP BS222_STAPS DBREF2 7NYI A A0A0P0C3P7 1 50 SEQRES 1 A 50 FME ALA GLY LEU LEU ARG PHE LEU LEU SER LYS GLY ARG SEQRES 2 A 50 ALA LEU TYR ASN TRP ALA SLL SER HIS VAL GLY LYS VAL SEQRES 3 A 50 TRP GLU TRP LEU LYS SER GLY ALA THR TYR GLU GLN ILE SEQRES 4 A 50 LYS GLU TRP ILE GLU ASN ALA LEU GLY TRP ARG MODRES 7NYI FME A 1 MET MODIFIED RESIDUE MODRES 7NYI SLL A 20 LYS MODIFIED RESIDUE HET FME A 1 20 HET SLL A 20 31 HETNAM FME N-FORMYLMETHIONINE HETNAM SLL (2S)-2-AZANYL-6-[(4-HYDROXY-4-OXO-BUTANOYL) HETNAM 2 SLL AMINO]HEXANOIC ACID HETSYN SLL 6-N-SUCCINYL-L-LYSINE FORMUL 1 FME C6 H11 N O3 S FORMUL 1 SLL C10 H18 N2 O5 HELIX 1 AA1 FME A 1 LYS A 11 1 11 HELIX 2 AA2 GLY A 12 ALA A 19 1 8 HELIX 3 AA3 GLY A 24 ALA A 34 1 11 HELIX 4 AA4 THR A 35 LEU A 47 1 13 HELIX 5 AA5 GLY A 48 ARG A 50 5 3 LINK C FME A 1 N ALA A 2 1555 1555 1.33 LINK C ALA A 19 N SLL A 20 1555 1555 1.33 LINK C SLL A 20 N SER A 21 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 N FME A 1 36.230 0.579 -8.208 1.00 0.00 N HETATM 2 CN FME A 1 35.152 0.476 -7.437 1.00 0.00 C HETATM 3 O1 FME A 1 35.201 0.677 -6.223 1.00 0.00 O HETATM 4 CA FME A 1 37.497 1.052 -7.668 1.00 0.00 C HETATM 5 CB FME A 1 38.626 0.791 -8.670 1.00 0.00 C HETATM 6 CG FME A 1 38.433 1.673 -9.906 1.00 0.00 C HETATM 7 SD FME A 1 39.703 1.280 -11.129 1.00 0.00 S HETATM 8 CE FME A 1 40.880 2.555 -10.612 1.00 0.00 C HETATM 9 C FME A 1 37.423 2.545 -7.359 1.00 0.00 C HETATM 10 O FME A 1 37.946 3.004 -6.343 1.00 0.00 O HETATM 11 H FME A 1 36.170 0.333 -9.156 1.00 0.00 H HETATM 12 HCN FME A 1 34.230 0.124 -7.872 1.00 0.00 H HETATM 13 HA FME A 1 37.711 0.514 -6.758 1.00 0.00 H HETATM 14 HB2 FME A 1 38.606 -0.247 -8.965 1.00 0.00 H HETATM 15 HB3 FME A 1 39.576 1.018 -8.210 1.00 0.00 H HETATM 16 HG2 FME A 1 38.524 2.709 -9.626 1.00 0.00 H HETATM 17 HG3 FME A 1 37.456 1.497 -10.328 1.00 0.00 H HETATM 18 HE1 FME A 1 40.885 2.620 -9.533 1.00 0.00 H HETATM 19 HE2 FME A 1 40.588 3.508 -11.024 1.00 0.00 H HETATM 20 HE3 FME A 1 41.865 2.296 -10.969 1.00 0.00 H