HEADER HYDROLASE 23-MAR-21 7NZ9 TITLE CRYSTAL STRUCTURE OF MOUSE ADAT2/ADAT3 TRNA DEAMINATION COMPLEX V128L TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA-SPECIFIC ADENOSINE DEAMINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEAMINASE DOMAIN-CONTAINING PROTEIN 1,TRNA-SPECIFIC COMPND 5 ADENOSINE-34 DEAMINASE SUBUNIT ADAT2; COMPND 6 EC: 3.5.4.33; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROBABLE INACTIVE TRNA-SPECIFIC ADENOSINE DEAMINASE-LIKE COMPND 10 PROTEIN 3; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: TRNA-SPECIFIC ADENOSINE-34 DEAMINASE SUBUNIT ADAT3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ADAT2, DEADC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: ADAT3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRNA MODIFICATION, WOBBLE ADENINE, INOSINE, ADAT, INTELLECTUAL KEYWDS 2 DISABILITY, NEUROLOGICAL DISORDERS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.RAMOS MORALES,C.ROMIER REVDAT 4 31-JAN-24 7NZ9 1 REMARK REVDAT 3 30-JUN-21 7NZ9 1 JRNL REVDAT 2 09-JUN-21 7NZ9 1 COMPND SOURCE JRNL REMARK REVDAT 2 2 1 DBREF SEQADV SEQRES HELIX REVDAT 2 3 1 SHEET LINK ATOM REVDAT 1 05-MAY-21 7NZ9 0 JRNL AUTH E.RAMOS-MORALES,E.BAYAM,J.DEL-POZO-RODRIGUEZ, JRNL AUTH 2 T.SALINAS-GIEGE,M.MAREK,P.TILLY,P.WOLFF,E.TROESCH,E.ENNIFAR, JRNL AUTH 3 L.DROUARD,J.D.GODIN,C.ROMIER JRNL TITL THE STRUCTURE OF THE MOUSE ADAT2/ADAT3 COMPLEX REVEALS THE JRNL TITL 2 MOLECULAR BASIS FOR MAMMALIAN TRNA WOBBLE JRNL TITL 3 ADENOSINE-TO-INOSINE DEAMINATION. JRNL REF NUCLEIC ACIDS RES. V. 49 6529 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34057470 JRNL DOI 10.1093/NAR/GKAB436 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.520 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 4723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.3800 - 6.1900 1.00 3034 141 0.1591 0.1612 REMARK 3 2 6.1900 - 4.9200 1.00 3012 161 0.1650 0.1704 REMARK 3 3 4.9200 - 4.3000 1.00 2966 179 0.1304 0.1380 REMARK 3 4 4.3000 - 3.9000 1.00 3019 190 0.1337 0.1723 REMARK 3 5 3.9000 - 3.6200 1.00 3025 151 0.1531 0.2101 REMARK 3 6 3.6200 - 3.4100 1.00 2983 173 0.1633 0.2344 REMARK 3 7 3.4100 - 3.2400 1.00 2975 156 0.1886 0.2063 REMARK 3 8 3.2400 - 3.1000 1.00 3039 153 0.1997 0.2338 REMARK 3 9 3.1000 - 2.9800 1.00 3015 147 0.1936 0.2502 REMARK 3 10 2.9800 - 2.8800 1.00 3029 136 0.2032 0.2501 REMARK 3 11 2.8800 - 2.7900 1.00 3055 131 0.1991 0.2702 REMARK 3 12 2.7900 - 2.7100 1.00 2967 166 0.2210 0.2395 REMARK 3 13 2.7100 - 2.6400 1.00 3043 146 0.2155 0.2657 REMARK 3 14 2.6300 - 2.5700 1.00 3036 160 0.2088 0.2587 REMARK 3 15 2.5700 - 2.5100 1.00 3019 144 0.2042 0.2628 REMARK 3 16 2.5100 - 2.4600 1.00 3002 165 0.2127 0.2485 REMARK 3 17 2.4600 - 2.4100 1.00 2974 171 0.2135 0.2417 REMARK 3 18 2.4100 - 2.3600 1.00 2985 153 0.2233 0.2737 REMARK 3 19 2.3600 - 2.3200 1.00 3049 180 0.2281 0.2789 REMARK 3 20 2.3200 - 2.2800 1.00 2979 163 0.2360 0.2336 REMARK 3 21 2.2800 - 2.2500 1.00 3005 145 0.2470 0.3135 REMARK 3 22 2.2500 - 2.2100 1.00 3051 187 0.2659 0.2878 REMARK 3 23 2.2100 - 2.1800 1.00 3003 130 0.2737 0.2886 REMARK 3 24 2.1800 - 2.1500 1.00 2991 144 0.2818 0.3059 REMARK 3 25 2.1500 - 2.1200 1.00 3029 176 0.2887 0.3242 REMARK 3 26 2.1200 - 2.0900 1.00 2989 162 0.3121 0.3665 REMARK 3 27 2.0900 - 2.0700 1.00 3045 155 0.3169 0.3749 REMARK 3 28 2.0700 - 2.0400 1.00 3031 160 0.3190 0.2903 REMARK 3 29 2.0400 - 2.0200 1.00 3006 129 0.3307 0.3059 REMARK 3 30 2.0200 - 1.9900 0.95 2788 169 0.3390 0.3532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.253 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3503 REMARK 3 ANGLE : 0.857 4777 REMARK 3 CHIRALITY : 0.052 539 REMARK 3 PLANARITY : 0.009 636 REMARK 3 DIHEDRAL : 13.143 1319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -9.4542 2.4464 38.3800 REMARK 3 T TENSOR REMARK 3 T11: 0.2977 T22: 0.3093 REMARK 3 T33: 0.3090 T12: -0.0258 REMARK 3 T13: -0.0682 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.2368 L22: 1.8297 REMARK 3 L33: 1.2281 L12: -0.8574 REMARK 3 L13: -0.4182 L23: 0.0177 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.1541 S13: -0.0547 REMARK 3 S21: -0.2436 S22: -0.0414 S23: 0.2242 REMARK 3 S31: -0.0477 S32: -0.1102 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -2.0760 -21.9187 65.2491 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.3037 REMARK 3 T33: 0.3595 T12: 0.0488 REMARK 3 T13: 0.0455 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 0.0845 L22: 0.0061 REMARK 3 L33: 1.6118 L12: 0.5769 REMARK 3 L13: -0.3438 L23: -0.8114 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: -0.0398 S13: -0.1072 REMARK 3 S21: -0.0335 S22: 0.0047 S23: -0.0647 REMARK 3 S31: 0.1668 S32: 0.0550 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7NZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3DH1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG3350, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 7.5 AND 0.2 M NABR, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.40700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.83400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.40700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.83400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 THR A 10 REMARK 465 PRO A 11 REMARK 465 ASP A 12 REMARK 465 GLY A 13 REMARK 465 ASN A 175 REMARK 465 PRO A 176 REMARK 465 ASN A 177 REMARK 465 ALA A 178 REMARK 465 PRO A 179 REMARK 465 LYS A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 VAL A 183 REMARK 465 ARG A 184 REMARK 465 LYS A 185 REMARK 465 LYS A 186 REMARK 465 ASP A 187 REMARK 465 CYS A 188 REMARK 465 GLN A 189 REMARK 465 LYS A 190 REMARK 465 SER A 191 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PRO B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 PHE B 7 REMARK 465 ALA B 8 REMARK 465 GLU B 9 REMARK 465 GLN B 10 REMARK 465 PRO B 11 REMARK 465 GLY B 12 REMARK 465 PRO B 13 REMARK 465 VAL B 14 REMARK 465 LYS B 15 REMARK 465 ALA B 16 REMARK 465 GLU B 17 REMARK 465 SER B 18 REMARK 465 GLU B 19 REMARK 465 GLU B 20 REMARK 465 GLN B 21 REMARK 465 GLU B 22 REMARK 465 PRO B 23 REMARK 465 ALA B 24 REMARK 465 HIS B 151 REMARK 465 GLU B 152 REMARK 465 ASP B 153 REMARK 465 LYS B 154 REMARK 465 GLN B 155 REMARK 465 VAL B 156 REMARK 465 THR B 157 REMARK 465 SER B 158 REMARK 465 ALA B 159 REMARK 465 LEU B 160 REMARK 465 ALA B 161 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 387 O HOH A 396 1.89 REMARK 500 O HOH B 658 O HOH B 660 2.13 REMARK 500 NH2 ARG B 186 O HOH B 501 2.15 REMARK 500 O HOH B 594 O HOH B 678 2.16 REMARK 500 OE1 GLU A 165 O HOH A 301 2.18 REMARK 500 O HOH B 658 O HOH B 671 2.18 REMARK 500 O HOH A 394 O HOH B 636 2.18 REMARK 500 O HOH A 380 O HOH A 392 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 351 O HOH B 652 2556 1.97 REMARK 500 O HOH B 626 O HOH B 669 4545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 139 72.94 -100.18 REMARK 500 ALA B 84 63.59 -67.05 REMARK 500 ASP B 271 57.74 -90.75 REMARK 500 THR B 317 -75.27 -86.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 ND1 REMARK 620 2 CYS A 107 SG 103.5 REMARK 620 3 CYS A 110 SG 113.3 117.6 REMARK 620 4 HOH A 319 O 111.5 102.0 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 223 ND1 REMARK 620 2 CYS B 289 SG 106.8 REMARK 620 3 CYS B 292 SG 105.8 115.7 REMARK 620 4 ASP B 348 OD2 114.5 95.6 118.0 REMARK 620 N 1 2 3 DBREF 7NZ9 A 1 191 UNP Q6P6J0 ADAT2_MOUSE 1 191 DBREF 7NZ9 B 1 349 UNP Q6PAT0 ADAT3_MOUSE 1 349 SEQADV 7NZ9 LEU B 128 UNP Q6PAT0 VAL 128 ENGINEERED MUTATION SEQADV 7NZ9 B UNP Q6PAT0 ARG 238 DELETION SEQADV 7NZ9 B UNP Q6PAT0 GLY 239 DELETION SEQADV 7NZ9 B UNP Q6PAT0 SER 240 DELETION SEQADV 7NZ9 B UNP Q6PAT0 CYS 241 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ASP 242 DELETION SEQADV 7NZ9 B UNP Q6PAT0 LEU 243 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ARG 244 DELETION SEQADV 7NZ9 B UNP Q6PAT0 SER 245 DELETION SEQADV 7NZ9 B UNP Q6PAT0 HIS 246 DELETION SEQADV 7NZ9 B UNP Q6PAT0 PRO 247 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ALA 248 DELETION SEQADV 7NZ9 B UNP Q6PAT0 CYS 249 DELETION SEQADV 7NZ9 B UNP Q6PAT0 SER 250 DELETION SEQADV 7NZ9 B UNP Q6PAT0 PHE 251 DELETION SEQADV 7NZ9 B UNP Q6PAT0 THR 252 DELETION SEQADV 7NZ9 B UNP Q6PAT0 GLN 253 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ALA 254 DELETION SEQADV 7NZ9 B UNP Q6PAT0 THR 255 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ALA 256 DELETION SEQADV 7NZ9 B UNP Q6PAT0 THR 257 DELETION SEQADV 7NZ9 B UNP Q6PAT0 GLN 258 DELETION SEQADV 7NZ9 B UNP Q6PAT0 GLY 259 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ALA 260 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ARG 261 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ALA 262 DELETION SEQADV 7NZ9 B UNP Q6PAT0 GLY 263 DELETION SEQADV 7NZ9 B UNP Q6PAT0 SER 264 DELETION SEQADV 7NZ9 B UNP Q6PAT0 VAL 265 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ARG 266 DELETION SEQADV 7NZ9 B UNP Q6PAT0 LYS 267 DELETION SEQADV 7NZ9 B UNP Q6PAT0 LEU 268 DELETION SEQADV 7NZ9 B UNP Q6PAT0 ASP 269 DELETION SEQRES 1 A 191 MET GLU GLU LYS VAL GLU SER THR THR THR PRO ASP GLY SEQRES 2 A 191 PRO CYS VAL VAL SER VAL GLN GLU THR GLU LYS TRP MET SEQRES 3 A 191 GLU GLU ALA MET ARG MET ALA LYS GLU ALA LEU GLU ASN SEQRES 4 A 191 ILE GLU VAL PRO VAL GLY CYS LEU MET VAL TYR ASN ASN SEQRES 5 A 191 GLU VAL VAL GLY LYS GLY ARG ASN GLU VAL ASN GLN THR SEQRES 6 A 191 LYS ASN ALA THR ARG HIS ALA GLU MET VAL ALA ILE ASP SEQRES 7 A 191 GLN VAL LEU ASP TRP CYS HIS GLN HIS GLY GLN SER PRO SEQRES 8 A 191 SER THR VAL PHE GLU HIS THR VAL LEU TYR VAL THR VAL SEQRES 9 A 191 GLU PRO CYS ILE MET CYS ALA ALA ALA LEU ARG LEU MET SEQRES 10 A 191 LYS ILE PRO LEU VAL VAL TYR GLY CYS GLN ASN GLU ARG SEQRES 11 A 191 PHE GLY GLY CYS GLY SER VAL LEU ASN ILE ALA SER ALA SEQRES 12 A 191 ASP LEU PRO ASN THR GLY ARG PRO PHE GLN CYS ILE PRO SEQRES 13 A 191 GLY TYR ARG ALA GLU GLU ALA VAL GLU LEU LEU LYS THR SEQRES 14 A 191 PHE TYR LYS GLN GLU ASN PRO ASN ALA PRO LYS SER LYS SEQRES 15 A 191 VAL ARG LYS LYS ASP CYS GLN LYS SER SEQRES 1 B 317 MET GLU PRO THR SER GLY PHE ALA GLU GLN PRO GLY PRO SEQRES 2 B 317 VAL LYS ALA GLU SER GLU GLU GLN GLU PRO ALA GLN TRP SEQRES 3 B 317 GLN ALA LEU PRO VAL LEU SER GLU GLN GLN SER GLY ALA SEQRES 4 B 317 VAL GLU LEU ILE LEU ALA TYR ALA ALA PRO VAL LEU ASP SEQRES 5 B 317 LYS ARG GLN THR SER ARG LEU LEU ARG GLU VAL SER ALA SEQRES 6 B 317 VAL TYR PRO LEU PRO ALA GLN PRO HIS LEU LYS ARG VAL SEQRES 7 B 317 ARG PRO SER ARG SER ALA GLY GLY ALA GLN SER SER ASP SEQRES 8 B 317 LEU LEU LEU CYS LEU ALA GLY PRO SER ALA GLY PRO ARG SEQRES 9 B 317 SER LEU ALA GLU LEU LEU PRO ARG PRO ALA VAL ASP PRO SEQRES 10 B 317 ARG GLY LEU GLY THR PRO PHE LEU VAL PRO LEU PRO ALA SEQRES 11 B 317 ARG PRO PRO LEU THR ARG SER GLN PHE GLU GLU ALA ARG SEQRES 12 B 317 ALA HIS TRP PRO THR SER PHE HIS GLU ASP LYS GLN VAL SEQRES 13 B 317 THR SER ALA LEU ALA GLY GLN LEU PHE SER THR GLN GLU SEQRES 14 B 317 ARG ALA ALA MET GLN THR HIS MET GLU ARG ALA VAL CYS SEQRES 15 B 317 ALA ALA GLN ARG ALA ALA ALA GLN GLY LEU ARG ALA VAL SEQRES 16 B 317 GLY ALA VAL VAL VAL ASP PRO ALA SER ASP ARG VAL LEU SEQRES 17 B 317 ALA THR GLY HIS ASP CYS SER SER VAL ALA SER PRO LEU SEQRES 18 B 317 LEU HIS ALA VAL MET VAL CYS ILE ASP LEU VAL ALA GLN SEQRES 19 B 317 GLY GLN GLY GLU ASP SER LEU PRO TYR VAL CYS THR GLY SEQRES 20 B 317 TYR ASP LEU TYR VAL THR ARG GLU PRO CYS VAL MET CYS SEQRES 21 B 317 ALA MET ALA LEU VAL HIS ALA ARG ILE GLN ARG VAL PHE SEQRES 22 B 317 TYR GLY ALA PRO SER PRO ASP GLY ALA LEU GLY THR LEU SEQRES 23 B 317 PHE ARG VAL HIS ALA ARG PRO ASP LEU ASN HIS ARG PHE SEQRES 24 B 317 GLN VAL PHE ARG GLY ILE LEU GLU ASP GLN CYS ARG GLN SEQRES 25 B 317 LEU ASP PRO ASP PRO HET ZN A 200 1 HET ZN B 400 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *288(H2 O) HELIX 1 AA1 CYS A 15 GLN A 20 1 6 HELIX 2 AA2 GLU A 21 ASN A 39 1 19 HELIX 3 AA3 GLU A 61 LYS A 66 1 6 HELIX 4 AA4 HIS A 71 HIS A 87 1 17 HELIX 5 AA5 SER A 90 GLU A 96 1 7 HELIX 6 AA6 CYS A 107 MET A 117 1 11 HELIX 7 AA7 ARG A 159 GLN A 173 1 15 HELIX 8 AA8 SER B 33 GLY B 38 1 6 HELIX 9 AA9 ASP B 52 ARG B 54 5 3 HELIX 10 AB1 GLN B 55 TYR B 67 1 13 HELIX 11 AB2 SER B 105 LEU B 110 1 6 HELIX 12 AB3 THR B 135 TRP B 146 1 12 HELIX 13 AB4 SER B 166 GLY B 191 1 26 HELIX 14 AB5 HIS B 223 GLY B 235 1 13 HELIX 15 AB6 CYS B 289 ARG B 300 1 12 HELIX 16 AB7 LEU B 338 ARG B 343 1 6 SHEET 1 AA1 5 GLU A 53 ARG A 59 0 SHEET 2 AA1 5 GLY A 45 TYR A 50 -1 N MET A 48 O GLY A 56 SHEET 3 AA1 5 THR A 98 VAL A 104 -1 O TYR A 101 N LEU A 47 SHEET 4 AA1 5 LEU A 121 CYS A 126 1 O VAL A 123 N LEU A 100 SHEET 5 AA1 5 GLN A 153 ILE A 155 1 O ILE A 155 N VAL A 122 SHEET 1 AA2 6 LEU B 29 PRO B 30 0 SHEET 2 AA2 6 GLN B 332 ARG B 335 -1 O ARG B 335 N LEU B 29 SHEET 3 AA2 6 ARG B 303 ALA B 308 1 N TYR B 306 O PHE B 334 SHEET 4 AA2 6 ASP B 281 ARG B 286 1 N LEU B 282 O PHE B 305 SHEET 5 AA2 6 GLY B 196 VAL B 200 -1 N VAL B 200 O ASP B 281 SHEET 6 AA2 6 VAL B 207 HIS B 212 -1 O LEU B 208 N VAL B 199 SHEET 1 AA3 4 VAL B 78 ARG B 82 0 SHEET 2 AA3 4 GLN B 88 LEU B 96 -1 O ASP B 91 N ARG B 79 SHEET 3 AA3 4 LEU B 42 VAL B 50 -1 N VAL B 50 O SER B 90 SHEET 4 AA3 4 PHE B 124 PRO B 129 -1 O LEU B 128 N ILE B 43 LINK ND1 HIS A 71 ZN ZN A 200 1555 1555 2.18 LINK SG CYS A 107 ZN ZN A 200 1555 1555 2.32 LINK SG CYS A 110 ZN ZN A 200 1555 1555 2.25 LINK ZN ZN A 200 O HOH A 319 1555 1555 1.98 LINK ND1 HIS B 223 ZN ZN B 400 1555 1555 2.20 LINK SG CYS B 289 ZN ZN B 400 1555 1555 2.29 LINK SG CYS B 292 ZN ZN B 400 1555 1555 2.33 LINK OD2 ASP B 348 ZN ZN B 400 1555 1555 1.98 CRYST1 51.976 106.814 129.668 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007712 0.00000