HEADER VIRAL PROTEIN 26-MAR-21 7O0G TITLE STRUCTURE OF THE FOAMY VIRAL PROTEASE-REVERSE TRANSCRIPTASE IN COMPLEX TITLE 2 WITH RNA/DNA HYBRID. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PR125POL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRO-POL POLYPROTEIN,PROTEASE/REVERSE TRANSCRIPTASE, COMPND 5 PROTEASE/REVERSE TRANSCRIPTASE/RIBONUCLEASE H,RIBONUCLEASE H,P42IN, COMPND 6 P65PRO-RT,P87PRO-RT-RNASEH; COMPND 7 EC: 2.7.7.49,2.7.7.7,3.1.26.4; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'- COMPND 11 R(*UP*UP*CP*UP*UP*GP*UP*CP*CP*AP*GP*GP*AP*GP*AP*GP*G)-3'); COMPND 12 CHAIN: E; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: ELECTRON DENSITY WAS NOT OBSERVED FOR THE LAST G; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'-D(*CP*CP*TP*CP*TP*CP*CP*TP*GP*GP*AP*CP*AP*AP*G)- COMPND 17 3'); COMPND 18 CHAIN: F; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WHITE-TUFTED-EAR MARMOSET SIMIAN FOAMY VIRUS; SOURCE 3 ORGANISM_TAXID: 2170205; SOURCE 4 GENE: POL; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS REVERSE TRANCSCRIPTASE, COMPLEX WITH RNA-DNA, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.NOWAK,M.NOWACKA,M.NOWOTNY REVDAT 2 19-JAN-22 7O0G 1 JRNL REVDAT 1 30-JUN-21 7O0G 0 JRNL AUTH M.NOWACKA,E.NOWAK,M.CZARNOCKI-CIECIURA,J.JACKIEWICZ, JRNL AUTH 2 K.SKOWRONEK,R.H.SZCZEPANOWSKI,B.M.WOHRL,M.NOWOTNY JRNL TITL STRUCTURES OF SUBSTRATE COMPLEXES OF FOAMY VIRAL JRNL TITL 2 PROTEASE-REVERSE TRANSCRIPTASE. JRNL REF J.VIROL. V. 95 84821 2021 JRNL REFN ESSN 1098-5514 JRNL PMID 34232702 JRNL DOI 10.1128/JVI.00848-21 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26640 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5200 - 6.4300 1.00 3037 160 0.1972 0.2146 REMARK 3 2 6.4300 - 5.1100 1.00 2872 150 0.2587 0.2752 REMARK 3 3 5.1100 - 4.4600 1.00 2833 149 0.2338 0.3003 REMARK 3 4 4.4600 - 4.0600 1.00 2790 147 0.2465 0.2736 REMARK 3 5 4.0600 - 3.7700 1.00 2777 146 0.2809 0.3260 REMARK 3 6 3.7700 - 3.5400 1.00 2783 147 0.3203 0.3283 REMARK 3 7 3.5400 - 3.3700 1.00 2756 145 0.3309 0.3538 REMARK 3 8 3.3700 - 3.2200 1.00 2765 145 0.3449 0.3461 REMARK 3 9 3.2200 - 3.1000 0.99 2698 140 0.4037 0.4757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.548 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.481 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 119.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 126.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6492 REMARK 3 ANGLE : 0.579 9027 REMARK 3 CHIRALITY : 0.041 1064 REMARK 3 PLANARITY : 0.005 1028 REMARK 3 DIHEDRAL : 12.797 1140 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5156 -27.1742 -25.0588 REMARK 3 T TENSOR REMARK 3 T11: 1.0775 T22: 0.7563 REMARK 3 T33: 1.0431 T12: -0.0990 REMARK 3 T13: 0.0253 T23: -0.0577 REMARK 3 L TENSOR REMARK 3 L11: 2.6444 L22: 0.8404 REMARK 3 L33: 5.4550 L12: 0.8067 REMARK 3 L13: 0.9006 L23: 0.7594 REMARK 3 S TENSOR REMARK 3 S11: 0.4512 S12: 0.1523 S13: -0.3570 REMARK 3 S21: 0.0219 S22: -0.3095 S23: 0.2247 REMARK 3 S31: -0.0163 S32: -0.2786 S33: -0.1641 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8631 -19.2560 -11.7868 REMARK 3 T TENSOR REMARK 3 T11: 0.9787 T22: 0.5565 REMARK 3 T33: 0.6789 T12: -0.0877 REMARK 3 T13: 0.0072 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 5.9476 L22: 1.8403 REMARK 3 L33: 3.9444 L12: 1.9272 REMARK 3 L13: -2.0256 L23: -1.8701 REMARK 3 S TENSOR REMARK 3 S11: 0.1983 S12: -0.2919 S13: -0.2271 REMARK 3 S21: 0.2858 S22: -0.2229 S23: 0.0672 REMARK 3 S31: 0.3287 S32: 0.1563 S33: 0.0088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4278 -12.6752 14.2976 REMARK 3 T TENSOR REMARK 3 T11: 1.2226 T22: 0.9698 REMARK 3 T33: 0.7164 T12: 0.1615 REMARK 3 T13: -0.1338 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 6.9982 L22: 6.1696 REMARK 3 L33: 7.7271 L12: -3.6890 REMARK 3 L13: -3.2734 L23: 4.0991 REMARK 3 S TENSOR REMARK 3 S11: -0.1552 S12: -0.8391 S13: -0.3840 REMARK 3 S21: 0.8224 S22: 0.3872 S23: -0.6351 REMARK 3 S31: 1.1845 S32: 1.1010 S33: -0.3435 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 444 THROUGH 749 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.6094 3.8536 28.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.8943 T22: 0.8319 REMARK 3 T33: 0.6661 T12: 0.0865 REMARK 3 T13: 0.0891 T23: -0.0483 REMARK 3 L TENSOR REMARK 3 L11: 2.1597 L22: 0.6616 REMARK 3 L33: 3.3832 L12: -0.2499 REMARK 3 L13: 1.8036 L23: 0.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: 0.1891 S13: -0.0174 REMARK 3 S21: -0.0242 S22: -0.0037 S23: -0.0554 REMARK 3 S31: 0.1152 S32: 0.2825 S33: 0.0264 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4589 -11.0621 -8.0335 REMARK 3 T TENSOR REMARK 3 T11: 1.7387 T22: 1.4456 REMARK 3 T33: 0.8021 T12: 0.0741 REMARK 3 T13: -0.0977 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 6.6078 L22: 9.8000 REMARK 3 L33: 7.1525 L12: -6.4976 REMARK 3 L13: -4.4451 L23: 7.5306 REMARK 3 S TENSOR REMARK 3 S11: -1.8268 S12: -0.2104 S13: -0.3405 REMARK 3 S21: 2.3269 S22: 0.6961 S23: 0.2178 REMARK 3 S31: 0.6111 S32: 1.9586 S33: 1.0035 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.2872 -3.7717 1.9814 REMARK 3 T TENSOR REMARK 3 T11: 1.1696 T22: 0.9957 REMARK 3 T33: 1.0929 T12: 0.0123 REMARK 3 T13: -0.0539 T23: 0.1684 REMARK 3 L TENSOR REMARK 3 L11: 2.7389 L22: 4.7583 REMARK 3 L33: 3.1994 L12: -1.2775 REMARK 3 L13: -2.5763 L23: 2.9723 REMARK 3 S TENSOR REMARK 3 S11: -1.2787 S12: -0.5139 S13: -1.2633 REMARK 3 S21: -0.7792 S22: 0.0458 S23: 0.2512 REMARK 3 S31: -1.7475 S32: 0.9534 S33: 1.2831 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.2226 8.9213 -6.4814 REMARK 3 T TENSOR REMARK 3 T11: 1.4078 T22: 1.3460 REMARK 3 T33: 1.4628 T12: -0.1712 REMARK 3 T13: -0.0877 T23: -0.1381 REMARK 3 L TENSOR REMARK 3 L11: 8.6454 L22: 4.7046 REMARK 3 L33: 3.1255 L12: -5.6367 REMARK 3 L13: 2.3201 L23: -3.1204 REMARK 3 S TENSOR REMARK 3 S11: 1.6961 S12: -0.0118 S13: -1.7204 REMARK 3 S21: -0.6156 S22: -1.0262 S23: 2.6820 REMARK 3 S31: -0.3902 S32: 0.6043 S33: -0.6111 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 16 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.5281 21.8913 0.8971 REMARK 3 T TENSOR REMARK 3 T11: 2.1608 T22: 1.7987 REMARK 3 T33: 2.5073 T12: -0.4533 REMARK 3 T13: -0.3772 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 9.7202 L22: 4.5167 REMARK 3 L33: 5.3759 L12: 6.3767 REMARK 3 L13: 7.2065 L23: 4.8307 REMARK 3 S TENSOR REMARK 3 S11: 3.1000 S12: -1.0895 S13: -2.3816 REMARK 3 S21: 2.3609 S22: 0.4222 S23: -0.8332 REMARK 3 S31: 2.6006 S32: 0.2033 S33: -3.4772 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.8171 0.4568 -2.2163 REMARK 3 T TENSOR REMARK 3 T11: 0.7732 T22: 1.4449 REMARK 3 T33: 0.9179 T12: -0.1191 REMARK 3 T13: -0.0765 T23: -0.1111 REMARK 3 L TENSOR REMARK 3 L11: 1.3939 L22: 7.6173 REMARK 3 L33: 6.8152 L12: -0.0611 REMARK 3 L13: -2.5071 L23: -3.7353 REMARK 3 S TENSOR REMARK 3 S11: 0.4799 S12: -0.6903 S13: 0.1377 REMARK 3 S21: 0.4351 S22: -0.6099 S23: 0.7026 REMARK 3 S31: -0.0329 S32: 0.2799 S33: 0.1109 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26673 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 20000, PEG MME550, MES/IMIDAZOLE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 126.76250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.51400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.51400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 190.14375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.51400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.51400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.38125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.51400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.51400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 190.14375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.51400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.51400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.38125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 126.76250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 GLY A 52 REMARK 465 GLY A 209 REMARK 465 LYS A 210 REMARK 465 ASP A 606 REMARK 465 LYS A 607 REMARK 465 LYS A 623 REMARK 465 PRO A 624 REMARK 465 GLY A 722 REMARK 465 HIS A 723 REMARK 465 LYS A 724 REMARK 465 PRO A 725 REMARK 465 SER A 726 REMARK 465 TYR A 727 REMARK 465 ASN A 750 REMARK 465 ASN A 751 REMARK 465 ILE A 752 REMARK 465 G E 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 6 CG CD1 CD2 REMARK 470 LYS A 14 NZ REMARK 470 LYS A 15 CE NZ REMARK 470 THR A 24 OG1 CG2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 HIS A 51 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 53 OG1 CG2 REMARK 470 LEU A 61 CG CD1 CD2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LEU A 66 CG CD1 CD2 REMARK 470 LYS A 102 CD CE NZ REMARK 470 GLN A 106 CG CD OE1 NE2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 115 CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 VAL A 135 CG1 CG2 REMARK 470 HIS A 146 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 165 CZ NH1 NH2 REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 VAL A 214 CG1 CG2 REMARK 470 LEU A 235 CG CD1 CD2 REMARK 470 ASN A 240 CG OD1 ND2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 247 CE NZ REMARK 470 LYS A 263 CG CD CE NZ REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 THR A 321 OG1 CG2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 470 LYS A 334 CG CD CE NZ REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 347 CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 ASN A 379 CG OD1 ND2 REMARK 470 ARG A 384 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 401 CG OD1 ND2 REMARK 470 ASN A 405 CG OD1 ND2 REMARK 470 LYS A 411 CD CE NZ REMARK 470 SER A 415 OG REMARK 470 LEU A 416 CG CD1 CD2 REMARK 470 THR A 419 OG1 CG2 REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 ILE A 425 CG1 CG2 CD1 REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 442 CG CD1 CD2 REMARK 470 ASN A 443 CG OD1 ND2 REMARK 470 HIS A 444 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 447 CG OD1 ND2 REMARK 470 GLU A 449 CG CD OE1 OE2 REMARK 470 GLN A 450 CG CD OE1 NE2 REMARK 470 ASN A 453 CG OD1 ND2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLN A 478 CG CD OE1 NE2 REMARK 470 LYS A 479 CG CD CE NZ REMARK 470 LYS A 511 CG CD CE NZ REMARK 470 ILE A 513 CG1 CG2 CD1 REMARK 470 LYS A 532 CG CD CE NZ REMARK 470 LEU A 533 CG CD1 CD2 REMARK 470 GLN A 534 CG CD OE1 NE2 REMARK 470 LEU A 552 CG CD1 CD2 REMARK 470 GLU A 556 CG CD OE1 OE2 REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 566 CG CD CE NZ REMARK 470 THR A 579 OG1 CG2 REMARK 470 LYS A 581 CG CD CE NZ REMARK 470 LEU A 586 CG CD1 CD2 REMARK 470 ILE A 588 CG1 CG2 CD1 REMARK 470 ARG A 603 CG CD NE CZ NH1 NH2 REMARK 470 SER A 604 OG REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 ILE A 617 CG1 CG2 CD1 REMARK 470 VAL A 621 CG1 CG2 REMARK 470 GLU A 625 CG CD OE1 OE2 REMARK 470 LEU A 626 CG CD1 CD2 REMARK 470 ILE A 628 CG1 CG2 CD1 REMARK 470 SER A 633 OG REMARK 470 LEU A 664 CG CD1 CD2 REMARK 470 ARG A 674 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 691 CG OD1 ND2 REMARK 470 LYS A 692 CG CD CE NZ REMARK 470 ILE A 716 CG1 CG2 CD1 REMARK 470 THR A 732 OG1 CG2 REMARK 470 GLN A 733 CG CD OE1 NE2 REMARK 470 ASN A 736 CG OD1 ND2 REMARK 470 LYS A 740 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 5 9.29 -69.93 REMARK 500 LEU A 6 -155.89 59.90 REMARK 500 THR A 49 -158.41 -104.35 REMARK 500 LEU A 99 -157.45 -121.87 REMARK 500 ASN A 117 72.44 -106.18 REMARK 500 TYR A 133 43.67 -91.90 REMARK 500 VAL A 312 -95.67 32.97 REMARK 500 ASN A 379 55.97 -95.39 REMARK 500 HIS A 444 46.78 -85.48 REMARK 500 GLN A 478 -60.90 -93.88 REMARK 500 PHE A 688 67.97 62.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 7O0G A 1 752 UNP D5JWV1 D5JWV1_9RETR 1 752 DBREF 7O0G E 1 18 PDB 7O0G 7O0G 1 18 DBREF 7O0G F 1 15 PDB 7O0G 7O0G 1 15 SEQADV 7O0G LEU A 586 UNP D5JWV1 UNK 586 VARIANT SEQADV 7O0G ASN A 598 UNP D5JWV1 ASP 598 ENGINEERED MUTATION SEQADV 7O0G ASN A 668 UNP D5JWV1 ASP 668 ENGINEERED MUTATION SEQRES 1 A 752 MET THR THR PRO PRO LEU LEU GLN LEU PRO VAL GLU VAL SEQRES 2 A 752 LYS LYS THR GLU LEU ASN GLY PHE TRP ASP THR GLY ALA SEQRES 3 A 752 GLN ILE THR CYS ILE PRO GLU ALA PHE LEU LYS GLU GLU SEQRES 4 A 752 ILE PRO ILE GLY GLU ALA GLN ILE LYS THR LEU HIS GLY SEQRES 5 A 752 THR LYS LEU GLN SER VAL TYR TYR LEU LYS PHE LYS VAL SEQRES 6 A 752 LEU GLY ARG LYS VAL GLU ALA GLU VAL THR THR SER PRO SEQRES 7 A 752 PHE ASP TYR VAL ILE ILE SER PRO SER ASP ILE PRO TRP SEQRES 8 A 752 TYR LYS PRO GLN PRO LEU GLU LEU THR VAL LYS LEU PRO SEQRES 9 A 752 VAL GLN ASP PHE LYS LYS GLU LEU ILE ASN LYS ALA ASN SEQRES 10 A 752 ILE ASN ASN GLU GLU LYS LYS GLN LEU ALA LYS LEU LEU SEQRES 11 A 752 ASP LYS TYR ASP VAL LEU TRP GLN GLN TRP GLU ASN GLN SEQRES 12 A 752 VAL GLY HIS ARG LYS ILE PRO PRO HIS ASN ILE ALA THR SEQRES 13 A 752 GLY THR VAL ALA PRO ARG PRO GLN ARG GLN TYR HIS ILE SEQRES 14 A 752 ASN THR LYS ALA LYS PRO SER ILE GLN GLN VAL ILE ASP SEQRES 15 A 752 ASP LEU LEU LYS GLN GLY VAL LEU ILE LYS GLN THR SER SEQRES 16 A 752 VAL MET ASN THR PRO ILE TYR PRO VAL PRO LYS PRO ASP SEQRES 17 A 752 GLY LYS TRP ARG MET VAL LEU ASP TYR ARG ALA VAL ASN SEQRES 18 A 752 LYS THR VAL PRO LEU ILE GLY ALA GLN ASN GLN HIS SER SEQRES 19 A 752 LEU GLY ILE LEU THR ASN LEU VAL ARG GLN LYS TYR LYS SEQRES 20 A 752 SER THR ILE ASP LEU SER ASN GLY PHE TRP ALA HIS PRO SEQRES 21 A 752 ILE THR LYS ASP SER GLN TRP ILE THR ALA PHE THR TRP SEQRES 22 A 752 GLU GLY LYS GLN HIS VAL TRP THR ARG LEU PRO GLN GLY SEQRES 23 A 752 PHE LEU ASN SER PRO ALA LEU PHE THR ALA ASP VAL VAL SEQRES 24 A 752 ASP LEU LEU LYS ASN ILE PRO GLY ILE SER VAL TYR VAL SEQRES 25 A 752 ASP ASP ILE TYR PHE SER THR GLU THR VAL SER GLU HIS SEQRES 26 A 752 LEU LYS ILE LEU GLU LYS VAL PHE LYS ILE LEU LEU GLU SEQRES 27 A 752 ALA GLY TYR ILE VAL SER LEU LYS LYS SER ALA LEU LEU SEQRES 28 A 752 ARG TYR GLU VAL THR PHE LEU GLY PHE SER ILE THR GLN SEQRES 29 A 752 THR GLY ARG GLY LEU THR SER GLU PHE LYS ASP LYS ILE SEQRES 30 A 752 GLN ASN ILE THR SER PRO ARG THR LEU LYS GLU LEU GLN SEQRES 31 A 752 SER ILE LEU GLY LEU PHE ASN PHE ALA ARG ASN PHE VAL SEQRES 32 A 752 PRO ASN PHE SER GLU ILE ILE LYS PRO LEU TYR SER LEU SEQRES 33 A 752 ILE SER THR ALA GLU GLY ASN ASN ILE LYS TRP THR SER SEQRES 34 A 752 GLU HIS THR ARG TYR LEU GLU GLU ILE VAL SER ALA LEU SEQRES 35 A 752 ASN HIS ALA GLY ASN LEU GLU GLN ARG ASP ASN GLU SER SEQRES 36 A 752 PRO LEU VAL VAL LYS LEU ASN ALA SER PRO LYS THR GLY SEQRES 37 A 752 TYR ILE ARG TYR TYR ASN LYS GLY GLY GLN LYS PRO ILE SEQRES 38 A 752 ALA TYR ALA SER HIS VAL PHE THR ASN THR GLU LEU LYS SEQRES 39 A 752 PHE THR PRO LEU GLU LYS LEU LEU VAL THR MET HIS LYS SEQRES 40 A 752 ALA LEU ILE LYS ALA ILE ASP LEU ALA LEU GLY GLN PRO SEQRES 41 A 752 ILE GLU VAL TYR SER PRO ILE ILE SER MET GLN LYS LEU SEQRES 42 A 752 GLN LYS THR PRO LEU PRO GLU ARG LYS ALA LEU SER THR SEQRES 43 A 752 ARG TRP ILE THR TRP LEU SER TYR LEU GLU ASP PRO ARG SEQRES 44 A 752 ILE THR PHE TYR TYR ASP LYS THR LEU PRO ASP LEU LYS SEQRES 45 A 752 ASN VAL PRO GLU THR VAL THR ASP LYS LYS PRO LYS MET SEQRES 46 A 752 LEU PRO ILE ILE GLU TYR ALA ALA VAL PHE TYR THR ASN SEQRES 47 A 752 GLY SER ALA ILE ARG SER PRO ASP LYS ASN LYS SER HIS SEQRES 48 A 752 SER SER GLY MET GLY ILE VAL HIS ALA VAL PHE LYS PRO SEQRES 49 A 752 GLU LEU THR ILE GLU HIS GLN TRP SER ILE PRO LEU GLY SEQRES 50 A 752 ASP HIS THR ALA GLN TYR ALA GLU ILE SER ALA VAL GLU SEQRES 51 A 752 PHE ALA CYS LYS LYS ALA ASN ASN ILE SER GLY PRO VAL SEQRES 52 A 752 LEU ILE VAL THR ASN SER ASP TYR VAL ALA ARG SER VAL SEQRES 53 A 752 ASN GLU GLU LEU PRO PHE TRP ARG SER ASN GLY PHE VAL SEQRES 54 A 752 ASN ASN LYS LYS LYS PRO LEU LYS HIS ILE SER LYS TRP SEQRES 55 A 752 LYS ASN ILE SER ASP SER LEU LEU LEU LYS ARG ASP ILE SEQRES 56 A 752 ILE ILE VAL HIS GLU PRO GLY HIS LYS PRO SER TYR THR SEQRES 57 A 752 SER ILE HIS THR GLN GLY ASN ASN LEU ALA ASP LYS LEU SEQRES 58 A 752 ALA THR GLN GLY SER TYR THR VAL ASN ASN ILE SEQRES 1 E 18 U U C U U G U C C A G G A SEQRES 2 E 18 G A G G G SEQRES 1 F 15 DC DC DT DC DT DC DC DT DG DG DA DC DA SEQRES 2 F 15 DA DG FORMUL 4 HOH *(H2 O) HELIX 1 AA1 ALA A 34 LEU A 36 5 3 HELIX 2 AA2 PRO A 104 LYS A 115 1 12 HELIX 3 AA3 ASN A 119 TYR A 133 1 15 HELIX 4 AA4 LYS A 172 GLN A 187 1 16 HELIX 5 AA5 TYR A 217 LYS A 222 1 6 HELIX 6 AA6 HIS A 233 ASN A 240 1 8 HELIX 7 AA7 GLY A 255 HIS A 259 5 5 HELIX 8 AA8 THR A 262 ALA A 270 5 9 HELIX 9 AA9 ASN A 289 LEU A 302 1 14 HELIX 10 AB1 THR A 321 GLY A 340 1 20 HELIX 11 AB2 SER A 344 SER A 348 5 5 HELIX 12 AB3 THR A 370 ASN A 379 1 10 HELIX 13 AB4 THR A 385 ASN A 397 1 13 HELIX 14 AB5 PHE A 398 ARG A 400 5 3 HELIX 15 AB6 ASN A 405 ALA A 420 1 16 HELIX 16 AB7 THR A 428 HIS A 444 1 17 HELIX 17 AB8 THR A 489 LYS A 494 1 6 HELIX 18 AB9 THR A 496 LEU A 517 1 22 HELIX 19 AC1 MET A 530 LYS A 535 1 6 HELIX 20 AC2 LEU A 544 GLU A 556 1 13 HELIX 21 AC3 THR A 640 ILE A 659 1 20 HELIX 22 AC4 SER A 669 ASN A 686 1 18 HELIX 23 AC5 HIS A 698 LYS A 712 1 15 HELIX 24 AC6 SER A 729 THR A 748 1 20 SHEET 1 AA1 8 GLY A 43 ALA A 45 0 SHEET 2 AA1 8 GLN A 56 VAL A 65 -1 O VAL A 58 N GLY A 43 SHEET 3 AA1 8 ARG A 68 SER A 77 -1 O VAL A 74 N TYR A 59 SHEET 4 AA1 8 THR A 29 PRO A 32 1 N ILE A 31 O THR A 75 SHEET 5 AA1 8 VAL A 82 ILE A 84 -1 O ILE A 83 N CYS A 30 SHEET 6 AA1 8 THR A 16 TRP A 22 1 N ASN A 19 O VAL A 82 SHEET 7 AA1 8 GLN A 8 VAL A 13 -1 N LEU A 9 O GLY A 20 SHEET 8 AA1 8 GLN A 56 VAL A 65 -1 O LYS A 64 N GLU A 12 SHEET 1 AA2 3 LEU A 190 LYS A 192 0 SHEET 2 AA2 3 LYS A 276 TRP A 280 -1 O VAL A 279 N ILE A 191 SHEET 3 AA2 3 PHE A 271 TRP A 273 -1 N TRP A 273 O LYS A 276 SHEET 1 AA3 2 ILE A 201 VAL A 204 0 SHEET 2 AA3 2 ARG A 212 LEU A 215 -1 O VAL A 214 N TYR A 202 SHEET 1 AA4 4 ILE A 308 TYR A 311 0 SHEET 2 AA4 4 ASP A 314 THR A 319 -1 O ASP A 314 N TYR A 311 SHEET 3 AA4 4 TYR A 246 ASP A 251 -1 N ILE A 250 O ILE A 315 SHEET 4 AA4 4 ALA A 349 ARG A 352 -1 O ALA A 349 N THR A 249 SHEET 1 AA5 3 VAL A 355 PHE A 357 0 SHEET 2 AA5 3 PHE A 360 ILE A 362 -1 O ILE A 362 N VAL A 355 SHEET 3 AA5 3 ARG A 367 LEU A 369 -1 O GLY A 368 N SER A 361 SHEET 1 AA6 5 ALA A 482 VAL A 487 0 SHEET 2 AA6 5 THR A 467 ASN A 474 -1 N ILE A 470 O ALA A 484 SHEET 3 AA6 5 LEU A 457 ALA A 463 -1 N ASN A 462 O TYR A 469 SHEET 4 AA6 5 ILE A 521 SER A 525 1 O TYR A 524 N VAL A 459 SHEET 5 AA6 5 THR A 561 TYR A 564 1 O THR A 561 N VAL A 523 SHEET 1 AA7 5 THR A 627 GLY A 637 0 SHEET 2 AA7 5 SER A 613 VAL A 621 -1 N HIS A 619 O HIS A 630 SHEET 3 AA7 5 ALA A 593 SER A 600 -1 N VAL A 594 O ALA A 620 SHEET 4 AA7 5 VAL A 663 VAL A 666 1 O LEU A 664 N PHE A 595 SHEET 5 AA7 5 ILE A 715 ILE A 717 1 O ILE A 716 N VAL A 663 CRYST1 105.028 105.028 253.525 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009521 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009521 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003944 0.00000