HEADER METAL BINDING PROTEIN 30-MAR-21 7O1T TITLE FE(CO)2CNCL SPECIES BOUND [HYDE FROM T. MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: [FEFE] HYDROGENASE MATURASE SUBUNIT HYDE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM_1269, THEMA_07990, TMARI_1274; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RADICAL SAM PROTEIN; HYDROGENASE MATURASE; METALLOPROTEIN, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.ROHAC,L.MARTIN,L.LIU,D.BASU,L.TAO,R.D.BRITT,T.RAUCHFUSS,Y.NICOLET REVDAT 4 31-JAN-24 7O1T 1 REMARK REVDAT 3 15-NOV-23 7O1T 1 ATOM REVDAT 2 18-AUG-21 7O1T 1 JRNL REMARK REVDAT 1 26-MAY-21 7O1T 0 JRNL AUTH R.ROHAC,L.MARTIN,L.LIU,D.BASU,L.TAO,R.D.BRITT,T.B.RAUCHFUSS, JRNL AUTH 2 Y.NICOLET JRNL TITL CRYSTAL STRUCTURE OF THE [FEFE]-HYDROGENASE MATURASE HYDE JRNL TITL 2 BOUND TO COMPLEX-B. JRNL REF J.AM.CHEM.SOC. V. 143 8499 2021 JRNL REFN ESSN 1520-5126 JRNL PMID 34048236 JRNL DOI 10.1021/JACS.1C03367 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 113796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 9.9300 - 4.5200 1.00 3631 155 0.1485 0.1576 REMARK 3 2 4.5200 - 3.6500 1.00 3660 170 0.1238 0.1260 REMARK 3 3 3.6400 - 3.2000 1.00 3623 176 0.1368 0.1380 REMARK 3 4 3.2000 - 2.9200 1.00 3603 200 0.1399 0.1994 REMARK 3 5 2.9200 - 2.7100 1.00 3636 180 0.1436 0.1693 REMARK 3 6 2.7100 - 2.5600 1.00 3589 231 0.1497 0.1733 REMARK 3 7 2.5600 - 2.4300 1.00 3572 189 0.1532 0.1788 REMARK 3 8 2.4300 - 2.3300 1.00 3640 191 0.1543 0.1972 REMARK 3 9 2.3300 - 2.2400 1.00 3629 214 0.1625 0.1963 REMARK 3 10 2.2400 - 2.1600 1.00 3572 228 0.1548 0.2003 REMARK 3 11 2.1600 - 2.0900 1.00 3616 176 0.1457 0.1926 REMARK 3 12 2.0900 - 2.0300 1.00 3615 194 0.1580 0.1836 REMARK 3 13 2.0300 - 1.9800 1.00 3624 192 0.1582 0.1786 REMARK 3 14 1.9800 - 1.9300 1.00 3584 171 0.1634 0.1878 REMARK 3 15 1.9300 - 1.8900 1.00 3642 190 0.1926 0.2244 REMARK 3 16 1.8900 - 1.8500 1.00 3634 192 0.1837 0.2235 REMARK 3 17 1.8500 - 1.8100 1.00 3573 221 0.1872 0.2141 REMARK 3 18 1.8100 - 1.7800 1.00 3629 182 0.1905 0.2378 REMARK 3 19 1.7800 - 1.7500 1.00 3601 188 0.1963 0.2064 REMARK 3 20 1.7500 - 1.7200 1.00 3611 176 0.2062 0.2150 REMARK 3 21 1.7200 - 1.6900 1.00 3607 203 0.2177 0.2709 REMARK 3 22 1.6900 - 1.6600 0.99 3616 196 0.2260 0.2167 REMARK 3 23 1.6600 - 1.6400 1.00 3596 188 0.2463 0.2827 REMARK 3 24 1.6400 - 1.6200 0.99 3612 179 0.2522 0.3108 REMARK 3 25 1.6200 - 1.6000 1.00 3550 186 0.2726 0.3398 REMARK 3 26 1.6000 - 1.5700 0.99 3586 189 0.2849 0.3516 REMARK 3 27 1.5700 - 1.5600 0.99 3580 164 0.2850 0.3475 REMARK 3 28 1.5600 - 1.5400 0.99 3649 180 0.3014 0.3410 REMARK 3 29 1.5400 - 1.5200 0.99 3555 201 0.3303 0.3617 REMARK 3 30 1.5200 - 1.5000 0.97 3474 185 0.3460 0.3333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -9 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4251 14.2691 -21.2494 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.3824 REMARK 3 T33: 0.4436 T12: -0.0547 REMARK 3 T13: -0.0555 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 4.9659 L22: 4.4076 REMARK 3 L33: 2.6783 L12: -2.3482 REMARK 3 L13: -1.0635 L23: 0.8030 REMARK 3 S TENSOR REMARK 3 S11: 0.1839 S12: 0.0415 S13: -0.0678 REMARK 3 S21: -0.3320 S22: -0.0226 S23: -0.3429 REMARK 3 S31: 0.0546 S32: 0.5096 S33: -0.0543 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8808 15.6100 -14.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.1075 T22: 0.2003 REMARK 3 T33: 0.1997 T12: -0.0264 REMARK 3 T13: -0.0283 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 3.9331 L22: 1.1584 REMARK 3 L33: 3.9670 L12: -0.5017 REMARK 3 L13: -1.8003 L23: 0.8433 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0444 S13: 0.0302 REMARK 3 S21: 0.0422 S22: -0.0287 S23: -0.2612 REMARK 3 S31: -0.0421 S32: 0.4402 S33: -0.0022 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4918 20.5042 -21.1226 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.1196 REMARK 3 T33: 0.1364 T12: 0.0127 REMARK 3 T13: -0.0031 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.9925 L22: 0.5479 REMARK 3 L33: 1.7153 L12: -0.1179 REMARK 3 L13: -0.1925 L23: -0.0704 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 0.0644 S13: 0.0779 REMARK 3 S21: -0.0089 S22: 0.0076 S23: 0.0397 REMARK 3 S31: -0.1195 S32: -0.1273 S33: -0.0083 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6414 15.9294 -21.8808 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.1162 REMARK 3 T33: 0.1392 T12: -0.0059 REMARK 3 T13: 0.0054 T23: 0.0184 REMARK 3 L TENSOR REMARK 3 L11: 1.2773 L22: 0.5629 REMARK 3 L33: 1.5036 L12: -0.1246 REMARK 3 L13: 0.0981 L23: -0.2438 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.0493 S13: 0.0554 REMARK 3 S21: -0.0330 S22: -0.0419 S23: -0.0518 REMARK 3 S31: -0.0319 S32: 0.1447 S33: 0.0054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0454 7.8229 -12.2871 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1162 REMARK 3 T33: 0.1469 T12: -0.0093 REMARK 3 T13: -0.0021 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.6672 L22: 0.9827 REMARK 3 L33: 0.8542 L12: 0.3389 REMARK 3 L13: -0.5171 L23: -0.1219 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: -0.0023 S13: -0.1439 REMARK 3 S21: -0.0372 S22: 0.0009 S23: -0.0201 REMARK 3 S31: 0.0925 S32: -0.0369 S33: 0.0320 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 300 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8583 2.8301 -17.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.2630 REMARK 3 T33: 0.2977 T12: -0.0042 REMARK 3 T13: -0.0191 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.4608 L22: 0.3119 REMARK 3 L33: 0.0654 L12: -0.3735 REMARK 3 L13: -0.1093 L23: 0.1111 REMARK 3 S TENSOR REMARK 3 S11: -0.0686 S12: -0.1428 S13: -0.2908 REMARK 3 S21: 0.0885 S22: 0.1533 S23: 0.0359 REMARK 3 S31: 0.1390 S32: -0.0568 S33: -0.0925 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3312 14.9363 -3.0637 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.2006 REMARK 3 T33: 0.1502 T12: 0.0003 REMARK 3 T13: 0.0091 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.2172 L22: 0.7927 REMARK 3 L33: 1.8121 L12: -0.2131 REMARK 3 L13: 0.2904 L23: 0.2620 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.3262 S13: -0.0351 REMARK 3 S21: 0.1080 S22: 0.0415 S23: -0.0840 REMARK 3 S31: -0.0223 S32: 0.0559 S33: -0.0654 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : XENOCS GENIX 3D CU HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113796 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3CIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG; LISO4; TRIS PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.77000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 347 REMARK 465 VAL A 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A -4 CD OE1 NE2 REMARK 470 LYS A -1 CD CE NZ REMARK 470 GLU A 8 CD OE1 OE2 REMARK 470 LYS A 9 NZ REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLU A 314 CD OE1 OE2 REMARK 470 LYS A 315 CD CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 LYS A 333 CD CE NZ REMARK 470 ARG A 336 CD NE CZ NH1 NH2 REMARK 470 GLU A 346 C O CB CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 150 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 509 O HOH A 793 1.82 REMARK 500 O HOH A 718 O HOH A 819 1.83 REMARK 500 N GLU A 346 O HOH A 501 1.85 REMARK 500 O HOH A 736 O HOH A 848 1.89 REMARK 500 O HOH A 514 O HOH A 766 1.91 REMARK 500 N MET A -9 O HOH A 502 1.93 REMARK 500 O HOH A 828 O HOH A 902 1.97 REMARK 500 OE2 GLU A 143 O HOH A 503 1.98 REMARK 500 O HOH A 663 O HOH A 877 1.99 REMARK 500 O GLN A -4 O HOH A 504 2.00 REMARK 500 OD1 ASP A 121 O HOH A 505 2.05 REMARK 500 OE2 GLU A 14 O HOH A 506 2.05 REMARK 500 O HOH A 924 O HOH A 929 2.06 REMARK 500 O HOH A 978 O HOH A 979 2.06 REMARK 500 O HOH A 715 O HOH A 942 2.08 REMARK 500 O HOH A 600 O HOH A 830 2.13 REMARK 500 O HOH A 640 O HOH A 935 2.13 REMARK 500 OG SER A -7 O HOH A 507 2.13 REMARK 500 O HOH A 511 O HOH A 561 2.14 REMARK 500 CD GLU A 143 O HOH A 503 2.14 REMARK 500 O HOH A 825 O HOH A 855 2.14 REMARK 500 O HOH A 676 O HOH A 911 2.16 REMARK 500 O HOH A 525 O HOH A 788 2.16 REMARK 500 O HOH A 528 O HOH A 666 2.16 REMARK 500 O SER A -7 O HOH A 508 2.17 REMARK 500 NZ LYS A 218 O HOH A 509 2.17 REMARK 500 N MET A -9 O HOH A 510 2.19 REMARK 500 O HOH A 977 O HOH A 982 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 819 O HOH A 851 2555 1.98 REMARK 500 O HOH A 698 O HOH A 872 2555 2.01 REMARK 500 O HOH A 906 O HOH A 966 4555 2.10 REMARK 500 O HOH A 822 O HOH A 889 2555 2.15 REMARK 500 O HOH A 901 O HOH A 958 4554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 291 CG - SD - CE ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 57.50 -94.69 REMARK 500 GLU A 161 -61.73 76.46 REMARK 500 THR A 175 -154.49 -152.81 REMARK 500 ALA A 196 -151.92 -120.27 REMARK 500 ASN A 288 12.57 -143.68 REMARK 500 ASP A 337 -158.42 -130.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 974 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 976 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 977 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A 978 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 979 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 981 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 6.50 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 408 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 63 SG REMARK 620 2 SF4 A 409 S1 104.6 REMARK 620 3 SF4 A 409 S3 117.1 104.3 REMARK 620 4 SF4 A 409 S4 119.6 103.4 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 SF4 A 409 S1 117.0 REMARK 620 3 SF4 A 409 S2 117.7 102.1 REMARK 620 4 SF4 A 409 S4 108.3 104.0 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 70 SG REMARK 620 2 SF4 A 409 S2 110.2 REMARK 620 3 SF4 A 409 S3 121.6 102.5 REMARK 620 4 SF4 A 409 S4 109.7 106.7 105.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 401 N REMARK 620 2 CYS A 401 SG 85.5 REMARK 620 3 CYS A 401 OXT 77.4 85.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 409 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 5X8 A 407 OXT REMARK 620 2 SF4 A 409 S1 92.5 REMARK 620 3 SF4 A 409 S2 93.4 100.3 REMARK 620 4 SF4 A 409 S3 157.7 101.2 101.3 REMARK 620 5 5X8 A 407 N 73.3 102.2 154.2 86.6 REMARK 620 N 1 2 3 4 DBREF 7O1T A 2 348 UNP Q9X0Z6 HYDE_THEMA 2 348 SEQADV 7O1T MET A -9 UNP Q9X0Z6 INITIATING METHIONINE SEQADV 7O1T TRP A -8 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T SER A -7 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T HIS A -6 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T PRO A -5 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T GLN A -4 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T PHE A -3 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T GLU A -2 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T LYS A -1 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T ALA A 0 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T SER A 1 UNP Q9X0Z6 EXPRESSION TAG SEQADV 7O1T SER A 311 UNP Q9X0Z6 CYS 311 ENGINEERED MUTATION SEQADV 7O1T SER A 319 UNP Q9X0Z6 CYS 319 ENGINEERED MUTATION SEQADV 7O1T SER A 322 UNP Q9X0Z6 CYS 322 ENGINEERED MUTATION SEQRES 1 A 358 MET TRP SER HIS PRO GLN PHE GLU LYS ALA SER THR GLY SEQRES 2 A 358 ARG GLU ILE LEU GLU LYS LEU GLU ARG ARG GLU PHE THR SEQRES 3 A 358 ARG GLU VAL LEU LYS GLU ALA LEU SER ILE ASN ASP ARG SEQRES 4 A 358 GLY PHE ASN GLU ALA LEU PHE LYS LEU ALA ASP GLU ILE SEQRES 5 A 358 ARG ARG LYS TYR VAL GLY ASP GLU VAL HIS ILE ARG ALA SEQRES 6 A 358 ILE ILE GLU PHE SER ASN VAL CYS ARG LYS ASN CYS LEU SEQRES 7 A 358 TYR CYS GLY LEU ARG ARG ASP ASN LYS ASN LEU LYS ARG SEQRES 8 A 358 TYR ARG MET THR PRO GLU GLU ILE VAL GLU ARG ALA ARG SEQRES 9 A 358 LEU ALA VAL GLN PHE GLY ALA LYS THR ILE VAL LEU GLN SEQRES 10 A 358 SER GLY GLU ASP PRO TYR TYR MET PRO ASP VAL ILE SER SEQRES 11 A 358 ASP ILE VAL LYS GLU ILE LYS LYS MET GLY VAL ALA VAL SEQRES 12 A 358 THR LEU SER LEU GLY GLU TRP PRO ARG GLU TYR TYR GLU SEQRES 13 A 358 LYS TRP LYS GLU ALA GLY ALA ASP ARG TYR LEU LEU ARG SEQRES 14 A 358 HIS GLU THR ALA ASN PRO VAL LEU HIS ARG LYS LEU ARG SEQRES 15 A 358 PRO ASP THR SER PHE GLU ASN ARG LEU ASN CYS LEU LEU SEQRES 16 A 358 THR LEU LYS GLU LEU GLY TYR GLU THR GLY ALA GLY SER SEQRES 17 A 358 MET VAL GLY LEU PRO GLY GLN THR ILE ASP ASP LEU VAL SEQRES 18 A 358 ASP ASP LEU LEU PHE LEU LYS GLU HIS ASP PHE ASP MET SEQRES 19 A 358 VAL GLY ILE GLY PRO PHE ILE PRO HIS PRO ASP THR PRO SEQRES 20 A 358 LEU ALA ASN GLU LYS LYS GLY ASP PHE THR LEU THR LEU SEQRES 21 A 358 LYS MET VAL ALA LEU THR ARG ILE LEU LEU PRO ASP SER SEQRES 22 A 358 ASN ILE PRO ALA THR THR ALA MET GLY THR ILE VAL PRO SEQRES 23 A 358 GLY GLY ARG GLU ILE THR LEU ARG CYS GLY ALA ASN VAL SEQRES 24 A 358 ILE MET PRO ASN TRP THR PRO SER PRO TYR ARG GLN LEU SEQRES 25 A 358 TYR GLN LEU TYR PRO GLY LYS ILE SER VAL PHE GLU LYS SEQRES 26 A 358 ASP THR ALA SER ILE PRO SER VAL MET LYS MET ILE GLU SEQRES 27 A 358 LEU LEU GLY ARG LYS PRO GLY ARG ASP TRP GLY GLY ARG SEQRES 28 A 358 LYS ARG VAL PHE GLU THR VAL HET CYS A 401 7 HET FE2 A 402 1 HET CMO A 403 2 HET CMO A 404 2 HET CYN A 405 2 HET PYR A 406 6 HET 5X8 A 407 25 HET CPS A 408 23 HET SF4 A 409 8 HET CL A 410 1 HET FE2 A 411 1 HET CMO A 412 2 HET CMO A 413 2 HET CYN A 414 2 HET IOD A 415 2 HETNAM CYS CYSTEINE HETNAM FE2 FE (II) ION HETNAM CMO CARBON MONOXIDE HETNAM CYN CYANIDE ION HETNAM PYR PYRUVIC ACID HETNAM 5X8 S-ADENOSYL-L-CYSTEINE HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM CL CHLORIDE ION HETNAM IOD IODIDE ION HETSYN CPS CHAPS FORMUL 2 CYS C3 H7 N O2 S FORMUL 3 FE2 2(FE 2+) FORMUL 4 CMO 4(C O) FORMUL 6 CYN 2(C N 1-) FORMUL 7 PYR C3 H4 O3 FORMUL 8 5X8 C13 H18 N6 O5 S FORMUL 9 CPS C32 H58 N2 O7 S FORMUL 10 SF4 FE4 S4 FORMUL 11 CL CL 1- FORMUL 16 IOD I 1- FORMUL 17 HOH *482(H2 O) HELIX 1 AA1 GLU A -2 ARG A 12 1 15 HELIX 2 AA2 THR A 16 ILE A 26 1 11 HELIX 3 AA3 ASP A 28 GLY A 48 1 21 HELIX 4 AA4 THR A 85 PHE A 99 1 15 HELIX 5 AA5 ASP A 111 MET A 115 5 5 HELIX 6 AA6 PRO A 116 LYS A 128 1 13 HELIX 7 AA7 PRO A 141 ALA A 151 1 11 HELIX 8 AA8 ASN A 164 ARG A 172 1 9 HELIX 9 AA9 SER A 176 LEU A 190 1 15 HELIX 10 AB1 THR A 206 ASP A 221 1 16 HELIX 11 AB2 ASP A 245 LEU A 260 1 16 HELIX 12 AB3 THR A 268 VAL A 275 1 8 HELIX 13 AB4 GLY A 277 ARG A 284 1 8 HELIX 14 AB5 TYR A 299 TYR A 303 5 5 HELIX 15 AB6 ALA A 318 LEU A 330 1 13 SHEET 1 AA1 7 MET A 224 VAL A 225 0 SHEET 2 AA1 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA1 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLU A 193 SHEET 4 AA1 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA1 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 AA1 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 AA1 7 VAL A 289 ILE A 290 1 O ILE A 290 N HIS A 52 SHEET 1 AA2 7 MET A 224 VAL A 225 0 SHEET 2 AA2 7 GLU A 193 ALA A 196 1 N ALA A 196 O MET A 224 SHEET 3 AA2 7 ARG A 155 LEU A 157 1 N TYR A 156 O GLU A 193 SHEET 4 AA2 7 ALA A 132 SER A 136 1 N LEU A 135 O LEU A 157 SHEET 5 AA2 7 THR A 103 SER A 108 1 N ILE A 104 O THR A 134 SHEET 6 AA2 7 GLU A 50 SER A 60 1 N ALA A 55 O VAL A 105 SHEET 7 AA2 7 LYS A 333 PRO A 334 1 O LYS A 333 N VAL A 51 SHEET 1 AA3 2 MET A 199 VAL A 200 0 SHEET 2 AA3 2 GLY A 228 PRO A 229 1 O GLY A 228 N VAL A 200 LINK SG CYS A 63 FE2 SF4 A 409 1555 1555 2.25 LINK SG CYS A 67 FE3 SF4 A 409 1555 1555 2.29 LINK SG CYS A 70 FE1 SF4 A 409 1555 1555 2.28 LINK SD BMET A 224 FE BFE2 A 411 1555 1555 2.42 LINK N CYS A 401 FE FE2 A 402 1555 1555 2.03 LINK SG CYS A 401 FE FE2 A 402 1555 1555 2.31 LINK OXT CYS A 401 FE FE2 A 402 1555 1555 2.10 LINK OXT 5X8 A 407 FE4 SF4 A 409 1555 1555 2.23 LINK N 5X8 A 407 FE4 SF4 A 409 1555 1555 2.28 CISPEP 1 MET A 115 PRO A 116 0 -2.70 CISPEP 2 SER A 297 PRO A 298 0 3.55 CRYST1 63.540 82.830 70.400 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014205 0.00000