HEADER HYDROLASE 30-MAR-21 7O1Y TITLE X-RAY STRUCTURE OF FURIN IN COMPLEX WITH THE GUANYLHYDRAZONE-BASED TITLE 2 INHIBITOR 2 (MI307) SOAKED AT 0.25 M NACL COMPND MOL_ID: 1; COMPND 2 MOLECULE: FURIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIBASIC-PROCESSING ENZYME,PAIRED BASIC AMINO ACID RESIDUE- COMPND 5 CLEAVING ENZYME,PACE; COMPND 6 EC: 3.4.21.75; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FURIN, FUR, PACE, PCSK3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293S KEYWDS PROPROTEIN CONVERTASE, INHIBITOR, SARS-COV-2, PROTEASE, COMPLEX, KEYWDS 2 FURIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.O.DAHMS,H.BRANDSTETTER REVDAT 3 31-JAN-24 7O1Y 1 REMARK REVDAT 2 29-SEP-21 7O1Y 1 JRNL REVDAT 1 01-SEP-21 7O1Y 0 JRNL AUTH S.O.DAHMS,T.HAIDER,G.KLEBE,T.STEINMETZER,H.BRANDSTETTER JRNL TITL OFF-STATE-SPECIFIC INHIBITION OF THE PROPROTEIN CONVERTASE JRNL TITL 2 FURIN. JRNL REF ACS CHEM.BIOL. V. 16 1692 2021 JRNL REFN ESSN 1554-8937 JRNL PMID 34415722 JRNL DOI 10.1021/ACSCHEMBIO.1C00411 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 86312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 4270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9400 - 5.2800 0.99 3023 162 0.2140 0.1970 REMARK 3 2 5.2800 - 4.1900 1.00 2872 154 0.1342 0.1363 REMARK 3 3 4.1900 - 3.6600 0.99 2792 149 0.1375 0.1573 REMARK 3 4 3.6600 - 3.3300 1.00 2811 154 0.1476 0.1530 REMARK 3 5 3.3300 - 3.0900 1.00 2784 152 0.1483 0.1553 REMARK 3 6 3.0900 - 2.9100 1.00 2772 144 0.1459 0.1562 REMARK 3 7 2.9100 - 2.7600 1.00 2772 146 0.1490 0.1846 REMARK 3 8 2.7600 - 2.6400 1.00 2757 155 0.1447 0.1728 REMARK 3 9 2.6400 - 2.5400 0.98 2737 125 0.1513 0.1655 REMARK 3 10 2.5400 - 2.4500 1.00 2758 134 0.1371 0.1805 REMARK 3 11 2.4500 - 2.3800 1.00 2738 129 0.1320 0.1670 REMARK 3 12 2.3800 - 2.3100 0.99 2746 135 0.1331 0.1626 REMARK 3 13 2.3100 - 2.2500 0.99 2738 118 0.1365 0.1566 REMARK 3 14 2.2500 - 2.1900 0.99 2725 141 0.1347 0.1581 REMARK 3 15 2.1900 - 2.1400 0.99 2724 148 0.1372 0.1642 REMARK 3 16 2.1400 - 2.1000 0.99 2729 140 0.1442 0.1707 REMARK 3 17 2.1000 - 2.0500 0.99 2673 146 0.1555 0.1539 REMARK 3 18 2.0500 - 2.0200 0.99 2704 134 0.1647 0.1935 REMARK 3 19 2.0200 - 1.9800 0.98 2697 133 0.1837 0.1993 REMARK 3 20 1.9800 - 1.9500 0.99 2722 124 0.1871 0.2186 REMARK 3 21 1.9500 - 1.9100 0.99 2687 128 0.2050 0.2454 REMARK 3 22 1.9100 - 1.8900 0.99 2691 154 0.2048 0.2266 REMARK 3 23 1.8900 - 1.8600 0.99 2699 134 0.2185 0.2721 REMARK 3 24 1.8600 - 1.8300 0.99 2684 139 0.2333 0.2807 REMARK 3 25 1.8300 - 1.8100 0.99 2662 159 0.2369 0.2644 REMARK 3 26 1.8100 - 1.7800 0.99 2702 132 0.2482 0.2577 REMARK 3 27 1.7800 - 1.7600 0.99 2658 152 0.2575 0.2534 REMARK 3 28 1.7600 - 1.7400 0.99 2701 133 0.2750 0.2676 REMARK 3 29 1.7400 - 1.7200 0.98 2643 162 0.2884 0.3037 REMARK 3 30 1.7200 - 1.7000 0.98 2641 154 0.3069 0.3061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.924 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3932 REMARK 3 ANGLE : 0.970 5363 REMARK 3 CHIRALITY : 0.059 569 REMARK 3 PLANARITY : 0.007 751 REMARK 3 DIHEDRAL : 26.999 1426 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 35.0406 -37.4176 0.1321 REMARK 3 T TENSOR REMARK 3 T11: 0.1255 T22: 0.1720 REMARK 3 T33: 0.1622 T12: -0.0007 REMARK 3 T13: -0.0002 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.2811 L22: 0.4887 REMARK 3 L33: 0.6399 L12: 0.0354 REMARK 3 L13: -0.1079 L23: 0.2300 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: 0.0196 S13: 0.0116 REMARK 3 S21: -0.0496 S22: -0.0141 S23: 0.0527 REMARK 3 S31: -0.0249 S32: -0.0987 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114941. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS XDS VERSION MAR 15, 2019 REMARK 200 DATA SCALING SOFTWARE : XDS XDS VERSION MAR 15, 2019 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86405 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.18.2_3874 REMARK 200 STARTING MODEL: 5JXG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION SOLUTION: 100MM MES, REMARK 280 200MM K/NAH2PO4, PH 5.5, 2 M NACL; RESERVOIR SOLUTION: 3.0-3.2M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.30067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.15033 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.22550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.07517 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 130.37583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 104.30067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.15033 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.07517 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 78.22550 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 130.37583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1094 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 108 REMARK 465 VAL A 109 REMARK 465 GLY A 576 REMARK 465 SER A 577 REMARK 465 LEU A 578 REMARK 465 VAL A 579 REMARK 465 PRO A 580 REMARK 465 ARG A 581 REMARK 465 GLY A 582 REMARK 465 SER A 583 REMARK 465 HIS A 584 REMARK 465 HIS A 585 REMARK 465 HIS A 586 REMARK 465 HIS A 587 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 117 NZ REMARK 480 GLN A 129 CD OE1 NE2 REMARK 480 ARG A 130 NE CZ NH1 NH2 REMARK 480 GLN A 178 OE1 NE2 REMARK 480 MET A 189 CE REMARK 480 GLU A 230 CD OE1 OE2 REMARK 480 LYS A 349 CD CE NZ REMARK 480 LYS A 359 CE NZ REMARK 480 LYS A 386 CE NZ REMARK 480 LYS A 419 NZ REMARK 480 GLU A 552 CD OE1 OE2 REMARK 480 GLU A 556 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 271 H13 UYQ A 603 10555 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 275 CE2 PHE A 275 CD2 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 303 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 130 62.88 -103.46 REMARK 500 ASP A 153 -132.07 -159.02 REMARK 500 ALA A 203 31.81 -147.35 REMARK 500 CYS A 211 -133.20 47.16 REMARK 500 CYS A 211 -134.32 44.75 REMARK 500 ALA A 216 72.92 -111.46 REMARK 500 MET A 226 -7.45 -140.92 REMARK 500 ASN A 243 59.69 38.16 REMARK 500 ALA A 267 -169.23 -77.65 REMARK 500 SER A 342 -152.03 -152.48 REMARK 500 GLN A 350 -163.99 -123.41 REMARK 500 GLU A 485 -104.85 -112.08 REMARK 500 ASP A 540 -1.24 72.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 115 OD2 REMARK 620 2 ASP A 162 OD1 149.6 REMARK 620 3 ASP A 162 OD2 157.7 51.9 REMARK 620 4 VAL A 205 O 91.0 86.3 98.1 REMARK 620 5 ASN A 208 OD1 74.2 75.6 125.3 92.1 REMARK 620 6 VAL A 210 O 92.7 90.8 78.1 176.2 89.6 REMARK 620 7 GLY A 212 O 85.0 125.1 75.0 88.7 159.2 90.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 604 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 174 OD2 REMARK 620 2 ASP A 179 OD1 101.9 REMARK 620 3 ASP A 179 OD2 90.2 51.1 REMARK 620 4 ASP A 181 O 90.0 72.1 121.9 REMARK 620 5 HOH A 869 O 86.2 128.9 78.8 159.0 REMARK 620 6 HOH A 884 O 95.5 146.5 157.9 79.6 80.3 REMARK 620 7 HOH A1081 O 167.9 87.8 90.2 100.0 82.1 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 258 OD1 REMARK 620 2 ASP A 301 OD2 96.5 REMARK 620 3 GLU A 331 OE1 78.0 91.1 REMARK 620 4 GLU A 331 OE2 132.3 82.4 54.5 REMARK 620 5 HOH A 761 O 100.5 162.5 88.0 82.9 REMARK 620 6 HOH A 925 O 72.6 89.8 150.4 154.5 99.5 REMARK 620 7 HOH A 953 O 146.6 74.9 133.3 79.4 93.1 75.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 309 O REMARK 620 2 SER A 311 O 95.3 REMARK 620 3 THR A 314 O 167.7 88.8 REMARK 620 4 THR A 314 OG1 92.7 82.8 76.3 REMARK 620 5 SER A 316 OG 71.3 164.2 102.8 89.3 REMARK 620 6 HOH A 868 O 111.8 113.6 76.8 148.0 80.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 608 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 413 O REMARK 620 2 HOH A 796 O 93.8 REMARK 620 3 HOH A 912 O 86.2 86.6 REMARK 620 4 HOH A1053 O 101.9 89.2 171.2 REMARK 620 5 HOH A1073 O 90.8 175.1 95.6 87.9 REMARK 620 6 HOH A1093 O 176.5 82.7 93.4 78.3 92.7 REMARK 620 N 1 2 3 4 5 DBREF 7O1Y A 108 574 UNP P09958 FURIN_HUMAN 108 574 SEQADV 7O1Y SER A 575 UNP P09958 EXPRESSION TAG SEQADV 7O1Y GLY A 576 UNP P09958 EXPRESSION TAG SEQADV 7O1Y SER A 577 UNP P09958 EXPRESSION TAG SEQADV 7O1Y LEU A 578 UNP P09958 EXPRESSION TAG SEQADV 7O1Y VAL A 579 UNP P09958 EXPRESSION TAG SEQADV 7O1Y PRO A 580 UNP P09958 EXPRESSION TAG SEQADV 7O1Y ARG A 581 UNP P09958 EXPRESSION TAG SEQADV 7O1Y GLY A 582 UNP P09958 EXPRESSION TAG SEQADV 7O1Y SER A 583 UNP P09958 EXPRESSION TAG SEQADV 7O1Y HIS A 584 UNP P09958 EXPRESSION TAG SEQADV 7O1Y HIS A 585 UNP P09958 EXPRESSION TAG SEQADV 7O1Y HIS A 586 UNP P09958 EXPRESSION TAG SEQADV 7O1Y HIS A 587 UNP P09958 EXPRESSION TAG SEQRES 1 A 480 ASP VAL TYR GLN GLU PRO THR ASP PRO LYS PHE PRO GLN SEQRES 2 A 480 GLN TRP TYR LEU SER GLY VAL THR GLN ARG ASP LEU ASN SEQRES 3 A 480 VAL LYS ALA ALA TRP ALA GLN GLY TYR THR GLY HIS GLY SEQRES 4 A 480 ILE VAL VAL SER ILE LEU ASP ASP GLY ILE GLU LYS ASN SEQRES 5 A 480 HIS PRO ASP LEU ALA GLY ASN TYR ASP PRO GLY ALA SER SEQRES 6 A 480 PHE ASP VAL ASN ASP GLN ASP PRO ASP PRO GLN PRO ARG SEQRES 7 A 480 TYR THR GLN MET ASN ASP ASN ARG HIS GLY THR ARG CYS SEQRES 8 A 480 ALA GLY GLU VAL ALA ALA VAL ALA ASN ASN GLY VAL CYS SEQRES 9 A 480 GLY VAL GLY VAL ALA TYR ASN ALA ARG ILE GLY GLY VAL SEQRES 10 A 480 ARG MET LEU ASP GLY GLU VAL THR ASP ALA VAL GLU ALA SEQRES 11 A 480 ARG SER LEU GLY LEU ASN PRO ASN HIS ILE HIS ILE TYR SEQRES 12 A 480 SER ALA SER TRP GLY PRO GLU ASP ASP GLY LYS THR VAL SEQRES 13 A 480 ASP GLY PRO ALA ARG LEU ALA GLU GLU ALA PHE PHE ARG SEQRES 14 A 480 GLY VAL SER GLN GLY ARG GLY GLY LEU GLY SER ILE PHE SEQRES 15 A 480 VAL TRP ALA SER GLY ASN GLY GLY ARG GLU HIS ASP SER SEQRES 16 A 480 CYS ASN CYS ASP GLY TYR THR ASN SER ILE TYR THR LEU SEQRES 17 A 480 SER ILE SER SER ALA THR GLN PHE GLY ASN VAL PRO TRP SEQRES 18 A 480 TYR SER GLU ALA CYS SER SER THR LEU ALA THR THR TYR SEQRES 19 A 480 SER SER GLY ASN GLN ASN GLU LYS GLN ILE VAL THR THR SEQRES 20 A 480 ASP LEU ARG GLN LYS CYS THR GLU SER HIS THR GLY THR SEQRES 21 A 480 SER ALA SER ALA PRO LEU ALA ALA GLY ILE ILE ALA LEU SEQRES 22 A 480 THR LEU GLU ALA ASN LYS ASN LEU THR TRP ARG ASP MET SEQRES 23 A 480 GLN HIS LEU VAL VAL GLN THR SER LYS PRO ALA HIS LEU SEQRES 24 A 480 ASN ALA ASN ASP TRP ALA THR ASN GLY VAL GLY ARG LYS SEQRES 25 A 480 VAL SER HIS SER TYR GLY TYR GLY LEU LEU ASP ALA GLY SEQRES 26 A 480 ALA MET VAL ALA LEU ALA GLN ASN TRP THR THR VAL ALA SEQRES 27 A 480 PRO GLN ARG LYS CYS ILE ILE ASP ILE LEU THR GLU PRO SEQRES 28 A 480 LYS ASP ILE GLY LYS ARG LEU GLU VAL ARG LYS THR VAL SEQRES 29 A 480 THR ALA CYS LEU GLY GLU PRO ASN HIS ILE THR ARG LEU SEQRES 30 A 480 GLU HIS ALA GLN ALA ARG LEU THR LEU SER TYR ASN ARG SEQRES 31 A 480 ARG GLY ASP LEU ALA ILE HIS LEU VAL SER PRO MET GLY SEQRES 32 A 480 THR ARG SER THR LEU LEU ALA ALA ARG PRO HIS ASP TYR SEQRES 33 A 480 SER ALA ASP GLY PHE ASN ASP TRP ALA PHE MET THR THR SEQRES 34 A 480 HIS SER TRP ASP GLU ASP PRO SER GLY GLU TRP VAL LEU SEQRES 35 A 480 GLU ILE GLU ASN THR SER GLU ALA ASN ASN TYR GLY THR SEQRES 36 A 480 LEU THR LYS PHE THR LEU VAL LEU TYR GLY THR ALA SER SEQRES 37 A 480 GLY SER LEU VAL PRO ARG GLY SER HIS HIS HIS HIS HET UYQ A 601 34 HET UYQ A 602 34 HET UYQ A 603 34 HET CA A 604 1 HET CA A 605 1 HET CA A 606 1 HET NA A 607 1 HET NA A 608 1 HET CL A 609 1 HET DMS A 610 10 HET DMS A 611 20 HET DMS A 612 20 HET DMS A 613 10 HET DMS A 614 10 HET DMS A 615 10 HET DMS A 616 10 HET DMS A 617 10 HET NAG A 618 28 HETNAM UYQ [[(2E)-2-[[4-[(E)-[[AZANIUMYLIDENE(AZANYL) HETNAM 2 UYQ METHYL]HYDRAZINYLIDENE]METHYL]PHENYL]METHYLIDENE]HYDRA HETNAM 3 UYQ ZINYL]-AZANYL-METHYLIDENE]AZANIUM HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 UYQ 3(C10 H16 N8 2+) FORMUL 5 CA 3(CA 2+) FORMUL 8 NA 2(NA 1+) FORMUL 10 CL CL 1- FORMUL 11 DMS 8(C2 H6 O S) FORMUL 19 NAG C8 H15 N O6 FORMUL 20 HOH *466(H2 O) HELIX 1 AA1 LYS A 117 GLN A 120 5 4 HELIX 2 AA2 GLN A 121 GLY A 126 1 6 HELIX 3 AA3 ASN A 133 GLN A 140 1 8 HELIX 4 AA4 LEU A 163 TYR A 167 5 5 HELIX 5 AA5 ASP A 168 SER A 172 5 5 HELIX 6 AA6 ARG A 193 ALA A 204 1 12 HELIX 7 AA7 THR A 232 GLY A 241 1 10 HELIX 8 AA8 ALA A 267 GLY A 281 1 15 HELIX 9 AA9 ARG A 282 LEU A 285 5 4 HELIX 10 AB1 GLY A 296 HIS A 300 5 5 HELIX 11 AB2 SER A 302 ASP A 306 5 5 HELIX 12 AB3 GLY A 366 ASN A 385 1 20 HELIX 13 AB4 THR A 389 SER A 401 1 13 HELIX 14 AB5 ASP A 430 GLN A 439 1 10 HELIX 15 AB6 ARG A 497 GLY A 499 5 3 SHEET 1 AA1 7 PHE A 173 ASP A 174 0 SHEET 2 AA1 7 ARG A 220 ARG A 225 1 O ARG A 225 N PHE A 173 SHEET 3 AA1 7 VAL A 148 ASP A 153 1 N ILE A 151 O VAL A 224 SHEET 4 AA1 7 ILE A 249 ALA A 252 1 O SER A 251 N LEU A 152 SHEET 5 AA1 7 ILE A 288 ALA A 292 1 O VAL A 290 N TYR A 250 SHEET 6 AA1 7 THR A 314 ALA A 320 1 O LEU A 315 N PHE A 289 SHEET 7 AA1 7 ALA A 338 TYR A 341 1 O ALA A 338 N SER A 318 SHEET 1 AA2 2 ILE A 351 ASP A 355 0 SHEET 2 AA2 2 LYS A 359 HIS A 364 -1 O LYS A 359 N ASP A 355 SHEET 1 AA3 2 ALA A 412 THR A 413 0 SHEET 2 AA3 2 LYS A 419 VAL A 420 -1 O VAL A 420 N ALA A 412 SHEET 1 AA4 3 ARG A 448 ASP A 453 0 SHEET 2 AA4 3 GLY A 561 THR A 573 -1 O GLY A 572 N ARG A 448 SHEET 3 AA4 3 LYS A 459 ASP A 460 -1 N LYS A 459 O LEU A 563 SHEET 1 AA5 4 ARG A 448 ASP A 453 0 SHEET 2 AA5 4 GLY A 561 THR A 573 -1 O GLY A 572 N ARG A 448 SHEET 3 AA5 4 ARG A 483 TYR A 495 -1 N ARG A 490 O THR A 567 SHEET 4 AA5 4 PHE A 528 THR A 535 -1 O THR A 535 N ALA A 487 SHEET 1 AA6 4 ARG A 464 VAL A 471 0 SHEET 2 AA6 4 GLY A 545 ASN A 553 -1 O TRP A 547 N LYS A 469 SHEET 3 AA6 4 LEU A 501 VAL A 506 -1 N HIS A 504 O GLU A 550 SHEET 4 AA6 4 ARG A 512 LEU A 516 -1 O SER A 513 N LEU A 505 SSBOND 1 CYS A 211 CYS A 360 1555 1555 2.04 SSBOND 2 CYS A 303 CYS A 333 1555 1555 2.02 SSBOND 3 CYS A 450 CYS A 474 1555 1555 2.04 LINK ND2AASN A 387 C1 ANAG A 618 1555 1555 1.43 LINK OD2 ASP A 115 CA CA A 605 1555 1555 2.31 LINK OD1 ASP A 162 CA CA A 605 1555 1555 2.35 LINK OD2 ASP A 162 CA CA A 605 1555 1555 2.65 LINK OD2 ASP A 174 CA CA A 604 1555 1555 2.31 LINK OD1 ASP A 179 CA CA A 604 1555 1555 2.52 LINK OD2 ASP A 179 CA CA A 604 1555 1555 2.55 LINK O ASP A 181 CA CA A 604 1555 1555 2.44 LINK O VAL A 205 CA CA A 605 1555 1555 2.30 LINK OD1 ASN A 208 CA CA A 605 1555 1555 2.53 LINK O VAL A 210 CA CA A 605 1555 1555 2.31 LINK O GLY A 212 CA CA A 605 1555 1555 2.40 LINK OD1 ASP A 258 CA CA A 606 1555 1555 2.36 LINK OD2 ASP A 301 CA CA A 606 1555 1555 2.39 LINK O THR A 309 NA NA A 607 1555 1555 2.38 LINK O SER A 311 NA NA A 607 1555 1555 2.47 LINK O THR A 314 NA NA A 607 1555 1555 2.44 LINK OG1 THR A 314 NA NA A 607 1555 1555 2.42 LINK OG SER A 316 NA NA A 607 1555 1555 2.49 LINK OE1 GLU A 331 CA CA A 606 1555 1555 2.42 LINK OE2 GLU A 331 CA CA A 606 1555 1555 2.44 LINK O THR A 413 NA NA A 608 1555 1555 2.35 LINK CA CA A 604 O HOH A 869 1555 1555 2.41 LINK CA CA A 604 O HOH A 884 1555 1555 2.38 LINK CA CA A 604 O HOH A1081 1555 1555 2.52 LINK CA CA A 606 O HOH A 761 1555 1555 2.35 LINK CA CA A 606 O HOH A 925 1555 1555 2.46 LINK CA CA A 606 O HOH A 953 1555 1555 2.54 LINK NA NA A 607 O HOH A 868 1555 1555 2.45 LINK NA NA A 608 O HOH A 796 1555 1555 2.46 LINK NA NA A 608 O HOH A 912 1555 1555 2.26 LINK NA NA A 608 O HOH A1053 1555 1555 2.23 LINK NA NA A 608 O HOH A1073 1555 1555 2.43 LINK NA NA A 608 O HOH A1093 1555 1555 3.17 CRYST1 131.058 131.058 156.451 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007630 0.004405 0.000000 0.00000 SCALE2 0.000000 0.008811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006392 0.00000