HEADER HYDROLASE 31-MAR-21 7O2P TITLE CRYSTAL STRUCTURE OF DANIO RERIO HISTONE DEACETYLASE 6 CATALYTIC TITLE 2 DOMAIN 2 IN COMPLEX WITH ITF3756 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE DEACETYLASE 6; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH, BRACHYDANIO RERIO; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: HDAC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTONE DEACETYLASE, COMPLEX WITH HYDROXAMATE INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZRUBEK,G.SANDRONE,C.D.CUKIER,A.STEVENAZZI REVDAT 3 31-JAN-24 7O2P 1 REMARK REVDAT 2 01-DEC-21 7O2P 1 JRNL REVDAT 1 27-OCT-21 7O2P 0 JRNL AUTH G.SANDRONE,C.D.CUKIER,K.ZRUBEK,M.MARCHINI,B.VERGANI, JRNL AUTH 2 G.CAPRINI,G.FOSSATI,C.STEINKUHLER,A.STEVENAZZI JRNL TITL ROLE OF FLUORINATION IN THE HISTONE DEACETYLASE 6 (HDAC6) JRNL TITL 2 SELECTIVITY OF BENZOHYDROXAMATE-BASED INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 12 1810 2021 JRNL REFN ISSN 1948-5875 JRNL PMID 34795871 JRNL DOI 10.1021/ACSMEDCHEMLETT.1C00425 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2406 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5573 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 139 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.98000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : -2.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.203 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.869 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5834 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5265 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7887 ; 1.593 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12189 ; 1.300 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 711 ; 7.393 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 314 ;32.662 ;21.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 920 ;15.418 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;17.651 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 737 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6557 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7O2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-21. REMARK 100 THE DEPOSITION ID IS D_1292114470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION MAR 15, 2019 REMARK 200 BUILT=20191015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.17600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.97700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 5EEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 7.5, 0.2 M REMARK 280 SODIUM NITRATE, 20 % (W/V) PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.37650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 434 REMARK 465 SER A 435 REMARK 465 ASN A 436 REMARK 465 ALA A 437 REMARK 465 GLY A 438 REMARK 465 GLY A 439 REMARK 465 SER A 440 REMARK 465 SER A 441 REMARK 465 GLY B 434 REMARK 465 SER B 435 REMARK 465 ASN B 436 REMARK 465 ALA B 437 REMARK 465 GLY B 438 REMARK 465 GLY B 439 REMARK 465 SER B 440 REMARK 465 SER B 441 REMARK 465 PRO B 442 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 781 OD1 ASN B 785 2.10 REMARK 500 O HOH A 983 O HOH A 1012 2.13 REMARK 500 O HOH B 937 O HOH B 972 2.15 REMARK 500 OE1 GLN A 450 O HOH A 901 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 777 CG2 THR B 773 2555 1.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 600 -92.04 -130.96 REMARK 500 LYS A 672 129.71 -37.21 REMARK 500 LEU A 685 -69.42 -138.95 REMARK 500 GLU A 742 -119.18 -107.85 REMARK 500 TYR B 448 142.79 -173.69 REMARK 500 SER B 531 70.54 55.14 REMARK 500 CYS B 581 141.50 178.61 REMARK 500 THR B 600 -110.19 -124.39 REMARK 500 LYS B 672 136.69 -39.00 REMARK 500 LEU B 685 -56.97 -128.50 REMARK 500 ARG B 708 127.58 -38.08 REMARK 500 GLU B 742 -112.36 -119.56 REMARK 500 HIS B 771 72.07 -66.68 REMARK 500 THR B 773 -2.32 -147.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG B 811 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 804 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 610 O REMARK 620 2 ASP A 610 OD1 70.3 REMARK 620 3 ASP A 612 O 99.7 95.4 REMARK 620 4 HIS A 614 O 162.0 92.0 78.4 REMARK 620 5 SER A 633 OG 82.9 106.3 157.5 105.8 REMARK 620 6 LEU A 634 O 76.5 142.2 72.7 119.2 86.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 612 OD1 REMARK 620 2 HIS A 614 ND1 103.1 REMARK 620 3 ASP A 705 OD2 100.5 97.7 REMARK 620 4 UZW A 801 N1 169.8 76.3 89.6 REMARK 620 5 UZW A 801 O2 150.1 106.5 80.2 30.7 REMARK 620 6 HOH A 911 O 93.5 97.1 156.8 76.6 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 623 O REMARK 620 2 ASP A 626 O 73.2 REMARK 620 3 VAL A 629 O 117.1 72.7 REMARK 620 4 TYR A 662 O 159.6 119.5 82.9 REMARK 620 5 HOH A 940 O 83.4 89.7 146.0 81.0 REMARK 620 6 HOH A 954 O 70.5 143.0 131.4 93.8 79.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 804 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 610 O REMARK 620 2 ASP B 610 OD1 71.2 REMARK 620 3 ASP B 612 O 105.6 98.1 REMARK 620 4 HIS B 614 O 168.3 97.2 76.1 REMARK 620 5 SER B 633 OG 80.4 104.5 157.4 102.5 REMARK 620 6 LEU B 634 O 76.4 142.3 72.6 114.8 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 612 OD1 REMARK 620 2 HIS B 614 ND1 106.4 REMARK 620 3 ASP B 705 OD2 103.2 95.4 REMARK 620 4 UZW B 801 O2 147.3 104.9 82.5 REMARK 620 5 HOH B 906 O 92.5 96.8 156.5 75.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 803 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 623 O REMARK 620 2 ASP B 626 O 73.1 REMARK 620 3 VAL B 629 O 113.6 74.7 REMARK 620 4 TYR B 662 O 156.4 116.5 90.0 REMARK 620 5 HOH B 920 O 82.8 83.6 146.6 77.2 REMARK 620 6 HOH B 963 O 72.1 144.5 126.7 93.5 85.2 REMARK 620 N 1 2 3 4 5 DBREF 7O2P A 440 798 UNP F8W4B7 F8W4B7_DANRE 440 798 DBREF 7O2P B 440 798 UNP F8W4B7 F8W4B7_DANRE 440 798 SEQADV 7O2P GLY A 434 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P SER A 435 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P ASN A 436 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P ALA A 437 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P GLY A 438 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P GLY A 439 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P GLY B 434 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P SER B 435 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P ASN B 436 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P ALA B 437 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P GLY B 438 UNP F8W4B7 CLONING ARTIFACT SEQADV 7O2P GLY B 439 UNP F8W4B7 CLONING ARTIFACT SEQRES 1 A 365 GLY SER ASN ALA GLY GLY SER SER PRO ILE THR GLY LEU SEQRES 2 A 365 VAL TYR ASP GLN ARG MET MET LEU HIS HIS ASN MET TRP SEQRES 3 A 365 ASP SER HIS HIS PRO GLU LEU PRO GLN ARG ILE SER ARG SEQRES 4 A 365 ILE PHE SER ARG HIS GLU GLU LEU ARG LEU LEU SER ARG SEQRES 5 A 365 CYS HIS ARG ILE PRO ALA ARG LEU ALA THR GLU GLU GLU SEQRES 6 A 365 LEU ALA LEU CYS HIS SER SER LYS HIS ILE SER ILE ILE SEQRES 7 A 365 LYS SER SER GLU HIS MET LYS PRO ARG ASP LEU ASN ARG SEQRES 8 A 365 LEU GLY ASP GLU TYR ASN SER ILE PHE ILE SER ASN GLU SEQRES 9 A 365 SER TYR THR CYS ALA LEU LEU ALA ALA GLY SER CYS PHE SEQRES 10 A 365 ASN SER ALA GLN ALA ILE LEU THR GLY GLN VAL ARG ASN SEQRES 11 A 365 ALA VAL ALA ILE VAL ARG PRO PRO GLY HIS HIS ALA GLU SEQRES 12 A 365 LYS ASP THR ALA CYS GLY PHE CYS PHE PHE ASN THR ALA SEQRES 13 A 365 ALA LEU THR ALA ARG TYR ALA GLN SER ILE THR ARG GLU SEQRES 14 A 365 SER LEU ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS SEQRES 15 A 365 GLY ASN GLY THR GLN HIS ILE PHE GLU GLU ASP ASP SER SEQRES 16 A 365 VAL LEU TYR ILE SER LEU HIS ARG TYR GLU ASP GLY ALA SEQRES 17 A 365 PHE PHE PRO ASN SER GLU ASP ALA ASN TYR ASP LYS VAL SEQRES 18 A 365 GLY LEU GLY LYS GLY ARG GLY TYR ASN VAL ASN ILE PRO SEQRES 19 A 365 TRP ASN GLY GLY LYS MET GLY ASP PRO GLU TYR MET ALA SEQRES 20 A 365 ALA PHE HIS HIS LEU VAL MET PRO ILE ALA ARG GLU PHE SEQRES 21 A 365 ALA PRO GLU LEU VAL LEU VAL SER ALA GLY PHE ASP ALA SEQRES 22 A 365 ALA ARG GLY ASP PRO LEU GLY GLY PHE GLN VAL THR PRO SEQRES 23 A 365 GLU GLY TYR ALA HIS LEU THR HIS GLN LEU MET SER LEU SEQRES 24 A 365 ALA ALA GLY ARG VAL LEU ILE ILE LEU GLU GLY GLY TYR SEQRES 25 A 365 ASN LEU THR SER ILE SER GLU SER MET SER MET CYS THR SEQRES 26 A 365 SER MET LEU LEU GLY ASP SER PRO PRO SER LEU ASP HIS SEQRES 27 A 365 LEU THR PRO LEU LYS THR SER ALA THR VAL SER ILE ASN SEQRES 28 A 365 ASN VAL LEU ARG ALA HIS ALA PRO PHE TRP SER SER LEU SEQRES 29 A 365 ARG SEQRES 1 B 365 GLY SER ASN ALA GLY GLY SER SER PRO ILE THR GLY LEU SEQRES 2 B 365 VAL TYR ASP GLN ARG MET MET LEU HIS HIS ASN MET TRP SEQRES 3 B 365 ASP SER HIS HIS PRO GLU LEU PRO GLN ARG ILE SER ARG SEQRES 4 B 365 ILE PHE SER ARG HIS GLU GLU LEU ARG LEU LEU SER ARG SEQRES 5 B 365 CYS HIS ARG ILE PRO ALA ARG LEU ALA THR GLU GLU GLU SEQRES 6 B 365 LEU ALA LEU CYS HIS SER SER LYS HIS ILE SER ILE ILE SEQRES 7 B 365 LYS SER SER GLU HIS MET LYS PRO ARG ASP LEU ASN ARG SEQRES 8 B 365 LEU GLY ASP GLU TYR ASN SER ILE PHE ILE SER ASN GLU SEQRES 9 B 365 SER TYR THR CYS ALA LEU LEU ALA ALA GLY SER CYS PHE SEQRES 10 B 365 ASN SER ALA GLN ALA ILE LEU THR GLY GLN VAL ARG ASN SEQRES 11 B 365 ALA VAL ALA ILE VAL ARG PRO PRO GLY HIS HIS ALA GLU SEQRES 12 B 365 LYS ASP THR ALA CYS GLY PHE CYS PHE PHE ASN THR ALA SEQRES 13 B 365 ALA LEU THR ALA ARG TYR ALA GLN SER ILE THR ARG GLU SEQRES 14 B 365 SER LEU ARG VAL LEU ILE VAL ASP TRP ASP VAL HIS HIS SEQRES 15 B 365 GLY ASN GLY THR GLN HIS ILE PHE GLU GLU ASP ASP SER SEQRES 16 B 365 VAL LEU TYR ILE SER LEU HIS ARG TYR GLU ASP GLY ALA SEQRES 17 B 365 PHE PHE PRO ASN SER GLU ASP ALA ASN TYR ASP LYS VAL SEQRES 18 B 365 GLY LEU GLY LYS GLY ARG GLY TYR ASN VAL ASN ILE PRO SEQRES 19 B 365 TRP ASN GLY GLY LYS MET GLY ASP PRO GLU TYR MET ALA SEQRES 20 B 365 ALA PHE HIS HIS LEU VAL MET PRO ILE ALA ARG GLU PHE SEQRES 21 B 365 ALA PRO GLU LEU VAL LEU VAL SER ALA GLY PHE ASP ALA SEQRES 22 B 365 ALA ARG GLY ASP PRO LEU GLY GLY PHE GLN VAL THR PRO SEQRES 23 B 365 GLU GLY TYR ALA HIS LEU THR HIS GLN LEU MET SER LEU SEQRES 24 B 365 ALA ALA GLY ARG VAL LEU ILE ILE LEU GLU GLY GLY TYR SEQRES 25 B 365 ASN LEU THR SER ILE SER GLU SER MET SER MET CYS THR SEQRES 26 B 365 SER MET LEU LEU GLY ASP SER PRO PRO SER LEU ASP HIS SEQRES 27 B 365 LEU THR PRO LEU LYS THR SER ALA THR VAL SER ILE ASN SEQRES 28 B 365 ASN VAL LEU ARG ALA HIS ALA PRO PHE TRP SER SER LEU SEQRES 29 B 365 ARG HET UZW A 801 21 HET ZN A 802 1 HET K A 803 1 HET K A 804 1 HET IOD A 805 1 HET IOD A 806 1 HET GOL A 807 6 HET GOL A 808 6 HET PEG A 809 7 HET EDO A 810 4 HET EDO A 811 4 HET IOD A 812 1 HET UZW B 801 21 HET ZN B 802 1 HET K B 803 1 HET K B 804 1 HET IOD B 805 1 HET GOL B 806 6 HET GOL B 807 6 HET GOL B 808 6 HET PEG B 809 7 HET PEG B 810 7 HET PEG B 811 5 HET EDO B 812 4 HET B3P B 813 19 HETNAM UZW ~{N}-OXIDANYL-4-[(5-THIOPHEN-2-YL-1,2,3,4-TETRAZOL-1- HETNAM 2 UZW YL)METHYL]BENZAMIDE HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM IOD IODIDE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 UZW 2(C13 H11 N5 O2 S) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 K 4(K 1+) FORMUL 7 IOD 4(I 1-) FORMUL 9 GOL 5(C3 H8 O3) FORMUL 11 PEG 4(C4 H10 O3) FORMUL 12 EDO 3(C2 H6 O2) FORMUL 27 B3P C11 H26 N2 O6 FORMUL 28 HOH *213(H2 O) HELIX 1 AA1 GLN A 450 LEU A 454 5 5 HELIX 2 AA2 PRO A 467 LEU A 480 1 14 HELIX 3 AA3 LEU A 482 CYS A 486 5 5 HELIX 4 AA4 THR A 495 ALA A 500 1 6 HELIX 5 AA5 SER A 504 SER A 513 1 10 HELIX 6 AA6 SER A 514 MET A 517 5 4 HELIX 7 AA7 LYS A 518 ASP A 527 1 10 HELIX 8 AA8 GLU A 537 THR A 558 1 22 HELIX 9 AA9 ASN A 587 ILE A 599 1 13 HELIX 10 AB1 GLY A 616 PHE A 623 1 8 HELIX 11 AB2 GLU A 638 ALA A 641 5 4 HELIX 12 AB3 SER A 646 ASN A 650 5 5 HELIX 13 AB4 LEU A 656 ARG A 660 5 5 HELIX 14 AB5 GLY A 674 LEU A 685 1 12 HELIX 15 AB6 LEU A 685 ALA A 694 1 10 HELIX 16 AB7 THR A 718 SER A 731 1 14 HELIX 17 AB8 LEU A 732 GLY A 735 5 4 HELIX 18 AB9 ASN A 746 LEU A 762 1 17 HELIX 19 AC1 LYS A 776 ALA A 791 1 16 HELIX 20 AC2 TRP A 794 ARG A 798 5 5 HELIX 21 AC3 ASP B 449 LEU B 454 5 6 HELIX 22 AC4 PRO B 467 LEU B 480 1 14 HELIX 23 AC5 ARG B 481 CYS B 486 1 6 HELIX 24 AC6 THR B 495 ALA B 500 1 6 HELIX 25 AC7 SER B 504 SER B 514 1 11 HELIX 26 AC8 GLU B 515 MET B 517 5 3 HELIX 27 AC9 LYS B 518 ASP B 527 1 10 HELIX 28 AD1 GLU B 537 THR B 558 1 22 HELIX 29 AD2 ASN B 587 ILE B 599 1 13 HELIX 30 AD3 GLY B 616 GLU B 624 1 9 HELIX 31 AD4 GLU B 638 ALA B 641 5 4 HELIX 32 AD5 SER B 646 ASN B 650 5 5 HELIX 33 AD6 LEU B 656 ARG B 660 5 5 HELIX 34 AD7 GLY B 674 LEU B 685 1 12 HELIX 35 AD8 LEU B 685 ALA B 694 1 10 HELIX 36 AD9 THR B 718 MET B 730 1 13 HELIX 37 AE1 SER B 731 GLY B 735 5 5 HELIX 38 AE2 ASN B 746 GLY B 763 1 18 HELIX 39 AE3 LYS B 776 ALA B 791 1 16 HELIX 40 AE4 TRP B 794 ARG B 798 5 5 SHEET 1 AA1 8 HIS A 487 ARG A 488 0 SHEET 2 AA1 8 THR A 444 TYR A 448 1 N THR A 444 O HIS A 487 SHEET 3 AA1 8 ASN A 563 ILE A 567 1 O ASN A 563 N GLY A 445 SHEET 4 AA1 8 VAL A 737 LEU A 741 1 O ILE A 739 N ALA A 566 SHEET 5 AA1 8 LEU A 697 ALA A 702 1 N VAL A 700 O ILE A 740 SHEET 6 AA1 8 VAL A 606 ASP A 610 1 N LEU A 607 O LEU A 699 SHEET 7 AA1 8 VAL A 629 ARG A 636 1 O LEU A 630 N ILE A 608 SHEET 8 AA1 8 ASN A 663 TRP A 668 1 O VAL A 664 N TYR A 631 SHEET 1 AA2 8 HIS B 487 ILE B 489 0 SHEET 2 AA2 8 THR B 444 VAL B 447 1 N THR B 444 O HIS B 487 SHEET 3 AA2 8 ASN B 563 ALA B 566 1 O ASN B 563 N GLY B 445 SHEET 4 AA2 8 VAL B 737 LEU B 741 1 O ILE B 739 N ALA B 566 SHEET 5 AA2 8 LEU B 697 ALA B 702 1 N VAL B 700 O ILE B 740 SHEET 6 AA2 8 VAL B 606 ASP B 610 1 N LEU B 607 O LEU B 699 SHEET 7 AA2 8 VAL B 629 ARG B 636 1 O ILE B 632 N ASP B 610 SHEET 8 AA2 8 ASN B 663 TRP B 668 1 O VAL B 664 N TYR B 631 LINK O ASP A 610 K K A 804 1555 1555 2.82 LINK OD1 ASP A 610 K K A 804 1555 1555 2.76 LINK OD1 ASP A 612 ZN ZN A 802 1555 1555 2.08 LINK O ASP A 612 K K A 804 1555 1555 2.44 LINK ND1 HIS A 614 ZN ZN A 802 1555 1555 2.20 LINK O HIS A 614 K K A 804 1555 1555 2.59 LINK O PHE A 623 K K A 803 1555 1555 2.48 LINK O ASP A 626 K K A 803 1555 1555 2.96 LINK O VAL A 629 K K A 803 1555 1555 2.67 LINK OG SER A 633 K K A 804 1555 1555 2.66 LINK O LEU A 634 K K A 804 1555 1555 2.68 LINK O TYR A 662 K K A 803 1555 1555 2.64 LINK OD2 ASP A 705 ZN ZN A 802 1555 1555 2.02 LINK N1 UZW A 801 ZN ZN A 802 1555 1555 2.67 LINK O2 UZW A 801 ZN ZN A 802 1555 1555 2.03 LINK ZN ZN A 802 O HOH A 911 1555 1555 2.20 LINK K K A 803 O HOH A 940 1555 1555 2.52 LINK K K A 803 O HOH A 954 1555 1555 2.87 LINK O ASP B 610 K K B 804 1555 1555 2.83 LINK OD1 ASP B 610 K K B 804 1555 1555 2.71 LINK OD1 ASP B 612 ZN ZN B 802 1555 1555 1.98 LINK O ASP B 612 K K B 804 1555 1555 2.41 LINK ND1 HIS B 614 ZN ZN B 802 1555 1555 2.14 LINK O HIS B 614 K K B 804 1555 1555 2.67 LINK O PHE B 623 K K B 803 1555 1555 2.62 LINK O ASP B 626 K K B 803 1555 1555 2.99 LINK O VAL B 629 K K B 803 1555 1555 2.66 LINK OG SER B 633 K K B 804 1555 1555 2.66 LINK O LEU B 634 K K B 804 1555 1555 2.59 LINK O TYR B 662 K K B 803 1555 1555 2.56 LINK OD2 ASP B 705 ZN ZN B 802 1555 1555 2.10 LINK O2 UZW B 801 ZN ZN B 802 1555 1555 2.18 LINK ZN ZN B 802 O HOH B 906 1555 1555 2.27 LINK K K B 803 O HOH B 920 1555 1555 2.48 LINK K K B 803 O HOH B 963 1555 1555 2.91 CISPEP 1 ARG A 569 PRO A 570 0 -4.55 CISPEP 2 PHE A 643 PRO A 644 0 7.85 CISPEP 3 ARG B 569 PRO B 570 0 -9.44 CISPEP 4 PHE B 643 PRO B 644 0 5.09 CRYST1 48.483 90.753 71.964 90.00 95.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020626 0.000000 0.002038 0.00000 SCALE2 0.000000 0.011019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013964 0.00000