HEADER IMMUNE SYSTEM 01-APR-21 7O30 TITLE CRYSTAL STRUCTURE OF THE ANTI-PAS FAB 1.1 IN COMPLEX WITH ITS EPITOPE TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-PAS FAB 1.1 CHIMERIC LIGHT CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTI-PAS FAB 1.1 CHIMERIC HEAVY CHAIN; COMPND 7 CHAIN: H, B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PAS#1 EPITOPE PEPTIDE; COMPND 11 CHAIN: P, Q; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: PCA IN THE PEPTIDE SEQUENCE IS THE RESIDUE CODE FOR COMPND 14 PYROGLUTAMIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_COMMON: MOUSE; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS ANTIBODY, DISORDERED PROTEIN ANTIGEN, PAS POLYPEPTIDE, PROTEIN KEYWDS 2 ENGINEERING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.SCHILZ,A.SCHIEFNER,A.SKERRA REVDAT 3 31-JAN-24 7O30 1 REMARK REVDAT 2 21-JUL-21 7O30 1 JRNL REVDAT 1 07-JUL-21 7O30 0 JRNL AUTH J.SCHILZ,U.BINDER,L.FRIEDRICH,M.GEBAUER,C.LUTZ,M.SCHLAPSCHY, JRNL AUTH 2 A.SCHIEFNER,A.SKERRA JRNL TITL MOLECULAR RECOGNITION OF STRUCTURALLY DISORDERED JRNL TITL 2 PRO/ALA-RICH SEQUENCES (PAS) BY ANTIBODIES INVOLVES AN ALA JRNL TITL 3 RESIDUE AT THE HOT SPOT OF THE EPITOPE. JRNL REF J.MOL.BIOL. V. 433 67113 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34161780 JRNL DOI 10.1016/J.JMB.2021.167113 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 29357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.3940 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.79000 REMARK 3 B22 (A**2) : -2.79000 REMARK 3 B33 (A**2) : 5.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.353 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.506 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6957 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6208 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9474 ; 1.357 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14522 ; 1.087 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 884 ; 6.864 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;33.263 ;23.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1102 ;16.561 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;14.454 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 910 ; 0.045 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7790 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1384 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 L 1 218 A 1 218 6086 0.100 0.050 REMARK 3 2 H 1 219 B 1 219 6020 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 7O30 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91840 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 16.8.2013 REMARK 200 DATA SCALING SOFTWARE : XSCALE MAR 15, 2019 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30855 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 34.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 22.19 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : 18.26 REMARK 200 R MERGE FOR SHELL (I) : 1.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7O2Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG 3350 100 MM HEPES PH 7.5 REMARK 280 200 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.30750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.30750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.30750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.30750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.92500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.30750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.30750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 99.92500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.30750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.30750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 99.92500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 137 REMARK 465 THR H 138 REMARK 465 SER H 139 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 LYS B 136 REMARK 465 SER B 137 REMARK 465 THR B 138 REMARK 465 SER B 139 REMARK 465 LYS B 221 REMARK 465 SER B 222 REMARK 465 CYS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 15 128.63 -38.00 REMARK 500 ALA L 55 -46.27 74.34 REMARK 500 ASP L 64 -29.04 -39.77 REMARK 500 ALA L 87 105.79 -55.54 REMARK 500 ASN L 142 75.57 48.46 REMARK 500 LYS L 194 -64.47 -129.44 REMARK 500 SER H 15 -1.00 70.24 REMARK 500 TYR H 99 107.22 -46.74 REMARK 500 TYR H 100 11.49 59.88 REMARK 500 ASP H 108 -76.08 -95.02 REMARK 500 ALA H 121 146.12 -36.18 REMARK 500 LYS H 124 116.82 -160.89 REMARK 500 LEU H 131 78.59 -111.14 REMARK 500 ASP H 151 62.71 61.86 REMARK 500 THR H 198 -75.59 -68.25 REMARK 500 PRO H 220 -146.71 -104.69 REMARK 500 LYS H 221 -166.45 58.23 REMARK 500 SER H 222 68.16 60.98 REMARK 500 ALA P 4 158.43 -48.21 REMARK 500 LEU A 15 128.95 -38.57 REMARK 500 ALA A 55 -46.59 74.77 REMARK 500 ALA A 87 105.69 -56.59 REMARK 500 ASN A 142 75.39 48.07 REMARK 500 LYS A 194 -63.94 -131.03 REMARK 500 SER B 15 -1.33 70.12 REMARK 500 TYR B 99 108.33 -47.46 REMARK 500 TYR B 100 11.55 59.57 REMARK 500 ASP B 108 -76.35 -93.91 REMARK 500 ALA B 121 146.58 -38.20 REMARK 500 LEU B 131 78.70 -112.58 REMARK 500 ASP B 151 62.50 62.07 REMARK 500 THR B 198 -76.71 -65.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7O2Z RELATED DB: PDB REMARK 900 RELATED ID: 7O31 RELATED DB: PDB REMARK 900 RELATED ID: 7O33 RELATED DB: PDB DBREF 7O30 L 1 218 PDB 7O30 7O30 1 218 DBREF 7O30 H 1 229 PDB 7O30 7O30 1 229 DBREF 7O30 P 1 10 PDB 7O30 7O30 1 10 DBREF 7O30 A 1 218 PDB 7O30 7O30 1 218 DBREF 7O30 B 1 229 PDB 7O30 7O30 1 229 DBREF 7O30 Q 1 10 PDB 7O30 7O30 1 10 SEQRES 1 L 218 ASP ILE GLU LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 L 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 L 218 LYS SER VAL SER SER SER GLY TYR ASN TYR MET PHE TRP SEQRES 4 L 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 L 218 TYR LEU ALA SER ASN LEU GLU SER GLY VAL PRO ASP ARG SEQRES 6 L 218 PHE TRP GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 L 218 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 L 218 CYS GLN HIS SER ARG GLU LEU PRO LEU THR PHE GLY ALA SEQRES 9 L 218 GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 L 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 L 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 L 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 L 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 L 218 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 L 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 L 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 L 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 229 GLU VAL LYS LEU GLN GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 229 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 229 PHE SER LEU THR GLY TYR GLY VAL ASN TRP VAL ARG GLN SEQRES 4 H 229 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY MET ILE TRP SEQRES 5 H 229 GLY ASP GLY ILE THR ASP TYR ASN SER ALA LEU LYS SER SEQRES 6 H 229 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 229 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 229 ARG TYR TYR CYS ALA ARG ASP TYR TYR GLY ARG ARG TYR SEQRES 9 H 229 TYR ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR SEQRES 10 H 229 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 H 229 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 H 229 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 H 229 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 H 229 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 H 229 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 H 229 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 H 229 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 H 229 SER CYS HIS HIS HIS HIS HIS HIS SEQRES 1 P 10 PCA ALA PRO ALA SER PRO ALA ALA PRO ALA SEQRES 1 A 218 ASP ILE GLU LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 A 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 A 218 LYS SER VAL SER SER SER GLY TYR ASN TYR MET PHE TRP SEQRES 4 A 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 A 218 TYR LEU ALA SER ASN LEU GLU SER GLY VAL PRO ASP ARG SEQRES 6 A 218 PHE TRP GLY SER GLY SER GLY THR ASP PHE THR LEU ASN SEQRES 7 A 218 ILE HIS PRO VAL GLU GLU GLU ASP ALA ALA THR TYR TYR SEQRES 8 A 218 CYS GLN HIS SER ARG GLU LEU PRO LEU THR PHE GLY ALA SEQRES 9 A 218 GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA PRO SEQRES 10 A 218 SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SEQRES 11 A 218 SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE SEQRES 12 A 218 TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN SEQRES 13 A 218 ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR GLU SEQRES 14 A 218 GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER THR SEQRES 15 A 218 LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL SEQRES 16 A 218 TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER PRO SEQRES 17 A 218 VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 B 229 GLU VAL LYS LEU GLN GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 B 229 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 B 229 PHE SER LEU THR GLY TYR GLY VAL ASN TRP VAL ARG GLN SEQRES 4 B 229 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY MET ILE TRP SEQRES 5 B 229 GLY ASP GLY ILE THR ASP TYR ASN SER ALA LEU LYS SER SEQRES 6 B 229 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 B 229 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 B 229 ARG TYR TYR CYS ALA ARG ASP TYR TYR GLY ARG ARG TYR SEQRES 9 B 229 TYR ALA MET ASP TYR TRP GLY GLN GLY THR SER VAL THR SEQRES 10 B 229 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 B 229 LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA SEQRES 12 B 229 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 B 229 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 B 229 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 B 229 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SER SEQRES 16 B 229 LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS SEQRES 17 B 229 PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SEQRES 18 B 229 SER CYS HIS HIS HIS HIS HIS HIS SEQRES 1 Q 10 PCA ALA PRO ALA SER PRO ALA ALA PRO ALA HET PCA P 1 8 HET PCA Q 1 8 HETNAM PCA PYROGLUTAMIC ACID FORMUL 3 PCA 2(C5 H7 N O3) FORMUL 7 HOH *53(H2 O) HELIX 1 AA1 GLU L 83 ALA L 87 5 5 HELIX 2 AA2 SER L 125 GLY L 132 1 8 HELIX 3 AA3 LYS L 187 HIS L 193 1 7 HELIX 4 AA4 SER H 61 LYS H 64 5 4 HELIX 5 AA5 GLN H 86 THR H 90 5 5 HELIX 6 AA6 TYR H 100 ARG H 102 5 3 HELIX 7 AA7 SER H 194 GLN H 199 1 6 HELIX 8 AA8 LYS H 208 ASN H 211 5 4 HELIX 9 AA9 GLU A 83 ALA A 87 5 5 HELIX 10 AB1 SER A 125 GLY A 132 1 8 HELIX 11 AB2 LYS A 187 HIS A 193 1 7 HELIX 12 AB3 SER B 61 LYS B 64 5 4 HELIX 13 AB4 GLN B 86 THR B 90 5 5 HELIX 14 AB5 TYR B 100 ARG B 102 5 3 HELIX 15 AB6 SER B 194 LEU B 196 5 3 HELIX 16 AB7 LYS B 208 ASN B 211 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 74 ILE L 79 -1 O PHE L 75 N CYS L 23 SHEET 4 AA1 4 PHE L 66 SER L 71 -1 N TRP L 67 O ASN L 78 SHEET 1 AA2 6 SER L 10 SER L 14 0 SHEET 2 AA2 6 THR L 106 LYS L 111 1 O GLU L 109 N LEU L 11 SHEET 3 AA2 6 ALA L 88 HIS L 94 -1 N TYR L 90 O THR L 106 SHEET 4 AA2 6 MET L 37 GLN L 42 -1 N GLN L 42 O THR L 89 SHEET 5 AA2 6 LYS L 49 TYR L 53 -1 O LEU L 51 N TRP L 39 SHEET 6 AA2 6 ASN L 57 LEU L 58 -1 O ASN L 57 N TYR L 53 SHEET 1 AA3 2 SER L 30 SER L 31 0 SHEET 2 AA3 2 TYR L 34 ASN L 35 -1 O TYR L 34 N SER L 31 SHEET 1 AA4 4 SER L 118 PHE L 122 0 SHEET 2 AA4 4 THR L 133 PHE L 143 -1 O LEU L 139 N PHE L 120 SHEET 3 AA4 4 TYR L 177 SER L 186 -1 O LEU L 183 N VAL L 136 SHEET 4 AA4 4 SER L 163 GLN L 164 -1 N GLN L 164 O THR L 182 SHEET 1 AA5 3 LYS L 149 VAL L 154 0 SHEET 2 AA5 3 VAL L 195 THR L 201 -1 O GLU L 199 N GLN L 151 SHEET 3 AA5 3 VAL L 209 ASN L 214 -1 O LYS L 211 N CYS L 198 SHEET 1 AA6 4 LYS H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O THR H 23 N GLN H 5 SHEET 3 AA6 4 GLN H 77 MET H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 AA6 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 AA7 6 LEU H 11 VAL H 12 0 SHEET 2 AA7 6 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA7 6 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 114 SHEET 4 AA7 6 VAL H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 AA7 6 THR H 57 TYR H 59 -1 O ASP H 58 N MET H 50 SHEET 1 AA8 4 LEU H 11 VAL H 12 0 SHEET 2 AA8 4 THR H 114 VAL H 118 1 O THR H 117 N VAL H 12 SHEET 3 AA8 4 ALA H 91 ASP H 98 -1 N TYR H 93 O THR H 114 SHEET 4 AA8 4 MET H 107 TRP H 110 -1 O TYR H 109 N ARG H 97 SHEET 1 AA9 4 SER H 127 LEU H 131 0 SHEET 2 AA9 4 THR H 142 TYR H 152 -1 O LYS H 150 N SER H 127 SHEET 3 AA9 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AA9 4 HIS H 171 THR H 172 -1 N HIS H 171 O VAL H 188 SHEET 1 AB1 4 SER H 127 LEU H 131 0 SHEET 2 AB1 4 THR H 142 TYR H 152 -1 O LYS H 150 N SER H 127 SHEET 3 AB1 4 TYR H 183 PRO H 192 -1 O TYR H 183 N TYR H 152 SHEET 4 AB1 4 VAL H 176 LEU H 177 -1 N VAL H 176 O SER H 184 SHEET 1 AB2 3 THR H 158 TRP H 161 0 SHEET 2 AB2 3 TYR H 201 HIS H 207 -1 O ASN H 206 N THR H 158 SHEET 3 AB2 3 THR H 212 VAL H 218 -1 O VAL H 214 N VAL H 205 SHEET 1 AB3 4 LEU A 4 SER A 7 0 SHEET 2 AB3 4 ALA A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 AB3 4 ASP A 74 ILE A 79 -1 O PHE A 75 N CYS A 23 SHEET 4 AB3 4 PHE A 66 SER A 71 -1 N TRP A 67 O ASN A 78 SHEET 1 AB4 6 SER A 10 SER A 14 0 SHEET 2 AB4 6 THR A 106 LYS A 111 1 O GLU A 109 N LEU A 11 SHEET 3 AB4 6 ALA A 88 HIS A 94 -1 N ALA A 88 O LEU A 108 SHEET 4 AB4 6 MET A 37 GLN A 42 -1 N GLN A 42 O THR A 89 SHEET 5 AB4 6 LYS A 49 TYR A 53 -1 O LEU A 51 N TRP A 39 SHEET 6 AB4 6 ASN A 57 LEU A 58 -1 O ASN A 57 N TYR A 53 SHEET 1 AB5 2 SER A 30 SER A 31 0 SHEET 2 AB5 2 TYR A 34 ASN A 35 -1 O TYR A 34 N SER A 31 SHEET 1 AB6 4 SER A 118 PHE A 122 0 SHEET 2 AB6 4 THR A 133 PHE A 143 -1 O LEU A 139 N PHE A 120 SHEET 3 AB6 4 TYR A 177 SER A 186 -1 O LEU A 183 N VAL A 136 SHEET 4 AB6 4 SER A 163 GLN A 164 -1 N GLN A 164 O THR A 182 SHEET 1 AB7 3 LYS A 149 VAL A 154 0 SHEET 2 AB7 3 VAL A 195 THR A 201 -1 O GLU A 199 N GLN A 151 SHEET 3 AB7 3 VAL A 209 ASN A 214 -1 O LYS A 211 N CYS A 198 SHEET 1 AB8 4 LYS B 3 SER B 7 0 SHEET 2 AB8 4 LEU B 18 SER B 25 -1 O SER B 25 N LYS B 3 SHEET 3 AB8 4 GLN B 77 MET B 82 -1 O VAL B 78 N CYS B 22 SHEET 4 AB8 4 LEU B 67 ASP B 72 -1 N SER B 70 O PHE B 79 SHEET 1 AB9 6 LEU B 11 VAL B 12 0 SHEET 2 AB9 6 THR B 114 VAL B 118 1 O THR B 117 N VAL B 12 SHEET 3 AB9 6 ALA B 91 ASP B 98 -1 N TYR B 93 O THR B 114 SHEET 4 AB9 6 VAL B 34 GLN B 39 -1 N VAL B 37 O TYR B 94 SHEET 5 AB9 6 GLU B 46 ILE B 51 -1 O LEU B 48 N TRP B 36 SHEET 6 AB9 6 THR B 57 TYR B 59 -1 O ASP B 58 N MET B 50 SHEET 1 AC1 4 LEU B 11 VAL B 12 0 SHEET 2 AC1 4 THR B 114 VAL B 118 1 O THR B 117 N VAL B 12 SHEET 3 AC1 4 ALA B 91 ASP B 98 -1 N TYR B 93 O THR B 114 SHEET 4 AC1 4 MET B 107 TRP B 110 -1 O TYR B 109 N ARG B 97 SHEET 1 AC2 4 SER B 127 LEU B 131 0 SHEET 2 AC2 4 THR B 142 TYR B 152 -1 O LYS B 150 N SER B 127 SHEET 3 AC2 4 TYR B 183 PRO B 192 -1 O TYR B 183 N TYR B 152 SHEET 4 AC2 4 HIS B 171 THR B 172 -1 N HIS B 171 O VAL B 188 SHEET 1 AC3 4 SER B 127 LEU B 131 0 SHEET 2 AC3 4 THR B 142 TYR B 152 -1 O LYS B 150 N SER B 127 SHEET 3 AC3 4 TYR B 183 PRO B 192 -1 O TYR B 183 N TYR B 152 SHEET 4 AC3 4 VAL B 176 LEU B 177 -1 N VAL B 176 O SER B 184 SHEET 1 AC4 3 THR B 158 TRP B 161 0 SHEET 2 AC4 3 TYR B 201 HIS B 207 -1 O ASN B 206 N THR B 158 SHEET 3 AC4 3 THR B 212 VAL B 218 -1 O VAL B 214 N VAL B 205 SSBOND 1 CYS L 23 CYS L 92 1555 1555 2.10 SSBOND 2 CYS L 138 CYS L 198 1555 1555 2.03 SSBOND 3 CYS L 218 CYS H 223 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 95 1555 1555 2.06 SSBOND 5 CYS H 147 CYS H 203 1555 1555 2.04 SSBOND 6 CYS A 23 CYS A 92 1555 1555 2.11 SSBOND 7 CYS A 138 CYS A 198 1555 1555 2.04 SSBOND 8 CYS B 22 CYS B 95 1555 1555 2.06 SSBOND 9 CYS B 147 CYS B 203 1555 1555 2.02 LINK C PCA P 1 N ALA P 2 1555 1555 1.34 LINK C PCA Q 1 N ALA Q 2 1555 1555 1.34 CISPEP 1 SER L 7 PRO L 8 0 -9.58 CISPEP 2 HIS L 80 PRO L 81 0 -10.47 CISPEP 3 LEU L 98 PRO L 99 0 -0.85 CISPEP 4 TYR L 144 PRO L 145 0 0.02 CISPEP 5 PHE H 153 PRO H 154 0 -4.49 CISPEP 6 GLU H 155 PRO H 156 0 -7.00 CISPEP 7 SER A 7 PRO A 8 0 -9.73 CISPEP 8 HIS A 80 PRO A 81 0 -9.60 CISPEP 9 LEU A 98 PRO A 99 0 -3.39 CISPEP 10 TYR A 144 PRO A 145 0 -0.83 CISPEP 11 PHE B 153 PRO B 154 0 -3.17 CISPEP 12 GLU B 155 PRO B 156 0 -7.33 CRYST1 102.615 102.615 199.850 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009745 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009745 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005004 0.00000