HEADER ISOMERASE 06-APR-21 7O4G TITLE HUMAN PHOSPHOMANNOMUTASE 2 (PMM2) WILD-TYPE SOAKED WITH THE ACTIVATOR TITLE 2 GLUCOSE 1,6-BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PMM 2; COMPND 5 EC: 5.4.2.8; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUES GPMAAP AT THE N-TERMINUS ARE NOT SEEN IN THE COMPND 8 ELECTRON DENSITY MAP. THE MOST N-TERMINAL GP SEQUENCE IS PART OF THE COMPND 9 FUSION TAG AFTER CLEAVAGE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PMM2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPIN-B KEYWDS GLYCOBIOLOGY, CONGENITAL DISORDERS OF GLYCOSYLATION, KEYWDS 2 PHOSPHOTRANSFERASE, PHOSPHOMUTASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.RAMON-MAIQUES,A.BRISO-MONTIANO,F.DEL CANO-OCHOA,A.VILAS,B.PEREZ, AUTHOR 2 V.RUBIO REVDAT 3 31-JAN-24 7O4G 1 REMARK REVDAT 2 30-MAR-22 7O4G 1 JRNL REVDAT 1 02-FEB-22 7O4G 0 JRNL AUTH A.BRISO-MONTIANO,F.DEL CANO-OCHOA,A.VILAS, JRNL AUTH 2 A.VELAZQUEZ-CAMPOY,V.RUBIO,B.PEREZ,S.RAMON-MAIQUES JRNL TITL INSIGHT ON MOLECULAR PATHOGENESIS AND PHARMACOCHAPERONING JRNL TITL 2 POTENTIAL IN PHOSPHOMANNOMUTASE 2 DEFICIENCY, PROVIDED BY JRNL TITL 3 NOVEL HUMAN PHOSPHOMANNOMUTASE 2 STRUCTURES. JRNL REF J INHERIT METAB DIS V. 45 318 2022 JRNL REFN ISSN 1573-2665 JRNL PMID 34859900 JRNL DOI 10.1002/JIMD.12461 REMARK 2 REMARK 2 RESOLUTION. 2.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.19 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16663 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 861 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.2100 - 4.8300 1.00 2868 162 0.2343 0.2788 REMARK 3 2 4.8300 - 3.8400 1.00 2650 152 0.1776 0.2165 REMARK 3 3 3.8400 - 3.3500 1.00 2623 124 0.2237 0.2895 REMARK 3 4 3.3500 - 3.0500 1.00 2574 135 0.2461 0.3078 REMARK 3 5 3.0400 - 2.8300 1.00 2548 142 0.2785 0.3431 REMARK 3 6 2.8300 - 2.6600 1.00 2539 146 0.2455 0.3025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.264 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.783 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.66 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3952 REMARK 3 ANGLE : 1.033 5337 REMARK 3 CHIRALITY : 0.054 574 REMARK 3 PLANARITY : 0.009 699 REMARK 3 DIHEDRAL : 5.325 542 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.660 REMARK 200 RESOLUTION RANGE LOW (A) : 361.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.30 REMARK 200 R MERGE (I) : 0.41700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 26.70 REMARK 200 R MERGE FOR SHELL (I) : 3.01100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7O0C REMARK 200 REMARK 200 REMARK: CRYSTALS OF HEXAGONAL MORPHOLOGY AND 0.025 MM IN THE REMARK 200 LARGEST DIMENSION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROPS MADE BY MIXING 1 MICROLITER OF REMARK 280 PROTEIN SOLUTION AND 1 MICROLITER OF CRYSTALLIZATION DEPOSIT REMARK 280 SOLUTION. PROTEIN SOLUTION CONTAINED 5 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5 AND 0.2 M NACL. CRYSTALLIZATION SOLUTION CONTAINED REMARK 280 0.3-0.4 M MGCL2, 24% PEG3350 AND 0.1 M HEPES PH 7.5. CRYSTALS REMARK 280 WERE SOAKED FOR 5-10 MIN IN MOTHER LIQUOR WITH 6 MM GLUCOSE 1,6- REMARK 280 BISPHOPHATE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 240.84400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 120.42200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 180.63300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.21100 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 301.05500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 240.84400 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 120.42200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 60.21100 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 180.63300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 301.05500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 430 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 4 REMARK 465 GLY B -1 REMARK 465 PRO B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 PRO B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 ASP A 185 CG OD1 OD2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 ARG B 21 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 GLU B 27 CG CD OE1 OE2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 GLU B 151 CG CD OE1 OE2 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 GLU B 235 CG CD OE1 OE2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 SER B 246 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 402 O HOH B 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH11 ARG A 239 OD2 ASP B 30 6454 1.43 REMARK 500 SG CYS A 83 HG CYS B 83 8545 1.46 REMARK 500 SG CYS A 83 HG CYS B 83 8545 1.49 REMARK 500 NH1 ARG A 239 OD2 ASP B 30 6454 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 13 -73.75 -96.39 REMARK 500 PHE A 68 78.45 -119.39 REMARK 500 ASN A 71 11.97 58.03 REMARK 500 ARG A 116 -103.05 -129.81 REMARK 500 SER A 135 0.18 -64.73 REMARK 500 TRP A 187 30.38 -89.72 REMARK 500 MET A 227 78.66 -116.15 REMARK 500 ARG B 116 -103.78 -115.33 REMARK 500 TRP B 187 45.73 -87.06 REMARK 500 LYS B 210 56.44 -94.50 REMARK 500 PRO B 213 151.30 -46.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 ASP A 14 O 72.9 REMARK 620 3 ASP A 209 OD1 95.6 112.6 REMARK 620 4 HOH A 409 O 89.0 93.3 154.0 REMARK 620 5 HOH A 411 O 90.4 150.6 92.6 61.8 REMARK 620 6 HOH A 417 O 160.2 91.3 101.7 79.7 98.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 221 O REMARK 620 2 ASP A 223 O 115.2 REMARK 620 3 THR A 226 O 149.6 88.7 REMARK 620 4 THR A 226 OG1 93.6 78.2 72.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 12 OD2 REMARK 620 2 ASP B 14 O 80.2 REMARK 620 3 ASP B 209 OD1 89.9 95.0 REMARK 620 4 HOH B 402 O 74.3 144.9 108.5 REMARK 620 5 HOH B 403 O 66.0 93.7 152.6 54.0 REMARK 620 6 HOH B 421 O 154.6 110.7 111.2 85.3 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 221 O REMARK 620 2 ASP B 223 O 88.9 REMARK 620 3 THR B 226 O 150.5 95.0 REMARK 620 4 THR B 226 OG1 78.3 71.7 75.3 REMARK 620 5 HOH B 431 O 103.0 93.8 105.9 165.5 REMARK 620 N 1 2 3 4 DBREF 7O4G A 1 246 UNP O15305 PMM2_HUMAN 1 246 DBREF 7O4G B 1 246 UNP O15305 PMM2_HUMAN 1 246 SEQADV 7O4G GLY A -1 UNP O15305 EXPRESSION TAG SEQADV 7O4G PRO A 0 UNP O15305 EXPRESSION TAG SEQADV 7O4G GLY B -1 UNP O15305 EXPRESSION TAG SEQADV 7O4G PRO B 0 UNP O15305 EXPRESSION TAG SEQRES 1 A 248 GLY PRO MET ALA ALA PRO GLY PRO ALA LEU CYS LEU PHE SEQRES 2 A 248 ASP VAL ASP GLY THR LEU THR ALA PRO ARG GLN LYS ILE SEQRES 3 A 248 THR LYS GLU MET ASP ASP PHE LEU GLN LYS LEU ARG GLN SEQRES 4 A 248 LYS ILE LYS ILE GLY VAL VAL GLY GLY SER ASP PHE GLU SEQRES 5 A 248 LYS VAL GLN GLU GLN LEU GLY ASN ASP VAL VAL GLU LYS SEQRES 6 A 248 TYR ASP TYR VAL PHE PRO GLU ASN GLY LEU VAL ALA TYR SEQRES 7 A 248 LYS ASP GLY LYS LEU LEU CYS ARG GLN ASN ILE GLN SER SEQRES 8 A 248 HIS LEU GLY GLU ALA LEU ILE GLN ASP LEU ILE ASN TYR SEQRES 9 A 248 CYS LEU SER TYR ILE ALA LYS ILE LYS LEU PRO LYS LYS SEQRES 10 A 248 ARG GLY THR PHE ILE GLU PHE ARG ASN GLY MET LEU ASN SEQRES 11 A 248 VAL SER PRO ILE GLY ARG SER CYS SER GLN GLU GLU ARG SEQRES 12 A 248 ILE GLU PHE TYR GLU LEU ASP LYS LYS GLU ASN ILE ARG SEQRES 13 A 248 GLN LYS PHE VAL ALA ASP LEU ARG LYS GLU PHE ALA GLY SEQRES 14 A 248 LYS GLY LEU THR PHE SER ILE GLY GLY GLN ILE SER PHE SEQRES 15 A 248 ASP VAL PHE PRO ASP GLY TRP ASP LYS ARG TYR CYS LEU SEQRES 16 A 248 ARG HIS VAL GLU ASN ASP GLY TYR LYS THR ILE TYR PHE SEQRES 17 A 248 PHE GLY ASP LYS THR MET PRO GLY GLY ASN ASP HIS GLU SEQRES 18 A 248 ILE PHE THR ASP PRO ARG THR MET GLY TYR SER VAL THR SEQRES 19 A 248 ALA PRO GLU ASP THR ARG ARG ILE CYS GLU LEU LEU PHE SEQRES 20 A 248 SER SEQRES 1 B 248 GLY PRO MET ALA ALA PRO GLY PRO ALA LEU CYS LEU PHE SEQRES 2 B 248 ASP VAL ASP GLY THR LEU THR ALA PRO ARG GLN LYS ILE SEQRES 3 B 248 THR LYS GLU MET ASP ASP PHE LEU GLN LYS LEU ARG GLN SEQRES 4 B 248 LYS ILE LYS ILE GLY VAL VAL GLY GLY SER ASP PHE GLU SEQRES 5 B 248 LYS VAL GLN GLU GLN LEU GLY ASN ASP VAL VAL GLU LYS SEQRES 6 B 248 TYR ASP TYR VAL PHE PRO GLU ASN GLY LEU VAL ALA TYR SEQRES 7 B 248 LYS ASP GLY LYS LEU LEU CYS ARG GLN ASN ILE GLN SER SEQRES 8 B 248 HIS LEU GLY GLU ALA LEU ILE GLN ASP LEU ILE ASN TYR SEQRES 9 B 248 CYS LEU SER TYR ILE ALA LYS ILE LYS LEU PRO LYS LYS SEQRES 10 B 248 ARG GLY THR PHE ILE GLU PHE ARG ASN GLY MET LEU ASN SEQRES 11 B 248 VAL SER PRO ILE GLY ARG SER CYS SER GLN GLU GLU ARG SEQRES 12 B 248 ILE GLU PHE TYR GLU LEU ASP LYS LYS GLU ASN ILE ARG SEQRES 13 B 248 GLN LYS PHE VAL ALA ASP LEU ARG LYS GLU PHE ALA GLY SEQRES 14 B 248 LYS GLY LEU THR PHE SER ILE GLY GLY GLN ILE SER PHE SEQRES 15 B 248 ASP VAL PHE PRO ASP GLY TRP ASP LYS ARG TYR CYS LEU SEQRES 16 B 248 ARG HIS VAL GLU ASN ASP GLY TYR LYS THR ILE TYR PHE SEQRES 17 B 248 PHE GLY ASP LYS THR MET PRO GLY GLY ASN ASP HIS GLU SEQRES 18 B 248 ILE PHE THR ASP PRO ARG THR MET GLY TYR SER VAL THR SEQRES 19 B 248 ALA PRO GLU ASP THR ARG ARG ILE CYS GLU LEU LEU PHE SEQRES 20 B 248 SER HET GOL A 301 14 HET MG A 302 1 HET MG A 303 1 HET CL A 304 1 HET G16 A 305 30 HET NA A 306 1 HET MG B 301 1 HET MG B 302 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM G16 1,6-DI-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN G16 ALPHA-D-GLUCOSE 1,6-BISPHOSPHATE; 1,6-DI-O-PHOSPHONO- HETSYN 2 G16 ALPHA-D-GLUCOSE; 1,6-DI-O-PHOSPHONO-D-GLUCOSE; 1,6-DI- HETSYN 3 G16 O-PHOSPHONO-GLUCOSE FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG 4(MG 2+) FORMUL 6 CL CL 1- FORMUL 7 G16 C6 H13 O12 P2 1- FORMUL 8 NA NA 1+ FORMUL 11 HOH *75(H2 O) HELIX 1 AA1 THR A 25 GLN A 37 1 13 HELIX 2 AA2 ASP A 48 GLY A 57 1 10 HELIX 3 AA3 ASP A 59 TYR A 64 1 6 HELIX 4 AA4 PRO A 69 LEU A 73 5 5 HELIX 5 AA5 ASN A 86 GLY A 92 1 7 HELIX 6 AA6 GLY A 92 ALA A 108 1 17 HELIX 7 AA7 SER A 137 ASN A 152 1 16 HELIX 8 AA8 ASN A 152 PHE A 165 1 14 HELIX 9 AA9 ASP A 188 VAL A 196 5 9 HELIX 10 AB1 ASP A 217 ASP A 223 1 7 HELIX 11 AB2 ALA A 233 SER A 246 1 14 HELIX 12 AB3 THR B 25 ARG B 36 1 12 HELIX 13 AB4 ASP B 48 GLY B 57 1 10 HELIX 14 AB5 ASP B 59 LYS B 63 5 5 HELIX 15 AB6 PRO B 69 GLY B 72 5 4 HELIX 16 AB7 ASN B 86 GLY B 92 1 7 HELIX 17 AB8 GLY B 92 ALA B 108 1 17 HELIX 18 AB9 SER B 137 ASN B 152 1 16 HELIX 19 AC1 ASN B 152 ALA B 166 1 15 HELIX 20 AC2 ASP B 188 VAL B 196 5 9 HELIX 21 AC3 ASP B 217 ASP B 223 1 7 HELIX 22 AC4 ALA B 233 SER B 246 1 14 SHEET 1 AA1 7 LYS A 80 LEU A 81 0 SHEET 2 AA1 7 TYR A 76 LYS A 77 -1 N LYS A 77 O LYS A 80 SHEET 3 AA1 7 TYR A 66 PHE A 68 -1 N VAL A 67 O TYR A 76 SHEET 4 AA1 7 LYS A 40 VAL A 44 1 N VAL A 43 O PHE A 68 SHEET 5 AA1 7 ALA A 7 ASP A 12 1 N CYS A 9 O GLY A 42 SHEET 6 AA1 7 THR A 203 GLY A 208 1 O TYR A 205 N LEU A 10 SHEET 7 AA1 7 MET A 227 SER A 230 1 O MET A 227 N ILE A 204 SHEET 1 AA2 4 ILE A 120 PHE A 122 0 SHEET 2 AA2 4 LEU A 127 VAL A 129 -1 O ASN A 128 N GLU A 121 SHEET 3 AA2 4 SER A 179 PRO A 184 -1 O VAL A 182 N LEU A 127 SHEET 4 AA2 4 LEU A 170 GLY A 175 -1 N THR A 171 O PHE A 183 SHEET 1 AA3 7 LYS B 80 ARG B 84 0 SHEET 2 AA3 7 VAL B 74 LYS B 77 -1 N LYS B 77 O LYS B 80 SHEET 3 AA3 7 TYR B 66 PHE B 68 -1 N VAL B 67 O TYR B 76 SHEET 4 AA3 7 LYS B 40 VAL B 44 1 N VAL B 43 O PHE B 68 SHEET 5 AA3 7 ALA B 7 ASP B 12 1 N PHE B 11 O VAL B 44 SHEET 6 AA3 7 THR B 203 GLY B 208 1 O TYR B 205 N LEU B 10 SHEET 7 AA3 7 MET B 227 SER B 230 1 O TYR B 229 N PHE B 206 SHEET 1 AA4 4 ILE B 120 PHE B 122 0 SHEET 2 AA4 4 LEU B 127 VAL B 129 -1 O ASN B 128 N GLU B 121 SHEET 3 AA4 4 SER B 179 PRO B 184 -1 O VAL B 182 N LEU B 127 SHEET 4 AA4 4 LEU B 170 GLY B 175 -1 N THR B 171 O PHE B 183 SSBOND 1 CYS A 83 CYS B 83 1555 8545 2.04 LINK OD2 ASP A 12 MG MG A 302 1555 1555 2.10 LINK O ASP A 14 MG MG A 302 1555 1555 2.09 LINK OD1 ASP A 209 MG MG A 302 1555 1555 2.29 LINK O PHE A 221 MG MG A 303 1555 1555 2.46 LINK O ASP A 223 MG MG A 303 1555 1555 2.48 LINK O THR A 226 MG MG A 303 1555 1555 2.90 LINK OG1 THR A 226 MG MG A 303 1555 1555 2.46 LINK MG MG A 302 O HOH A 409 1555 1555 2.57 LINK MG MG A 302 O HOH A 411 1555 1555 1.78 LINK MG MG A 302 O HOH A 417 1555 1555 1.77 LINK OD2 ASP B 12 MG MG B 301 1555 1555 2.04 LINK O ASP B 14 MG MG B 301 1555 1555 2.04 LINK OD1 ASP B 209 MG MG B 301 1555 1555 2.50 LINK O PHE B 221 MG MG B 302 1555 1555 2.78 LINK O ASP B 223 MG MG B 302 1555 1555 2.63 LINK O THR B 226 MG MG B 302 1555 1555 2.36 LINK OG1 THR B 226 MG MG B 302 1555 1555 2.60 LINK MG MG B 301 O HOH B 402 1555 1555 2.03 LINK MG MG B 301 O HOH B 403 1555 1555 2.63 LINK MG MG B 301 O HOH B 421 1555 1555 2.44 LINK MG MG B 302 O HOH B 431 1555 1555 2.09 CRYST1 71.144 71.144 361.266 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014056 0.008115 0.000000 0.00000 SCALE2 0.000000 0.016230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002768 0.00000