HEADER LYASE 09-APR-21 7O5R TITLE CRYSTAL STRUCTURE OF HOLO-SWHPA-MN (HYDROXYKETOACID ALDOLASE) FROM TITLE 2 SPHINGOMONAS WITTICHII RW1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYKETOACID ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZORHABDUS WITTICHII RW1; SOURCE 3 ORGANISM_TAXID: 392499; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CLASS II PYRUVATE ALDOLASE, METAL DEPENDENT, ALDOL REACTION, KEYWDS 2 ALDOLASE, HOLO, LYASE, MANGANESE, CARBON BOND FORMATION EXPDTA X-RAY DIFFRACTION AUTHOR J.LAUSTSEN,I.JUSTO,S.R.MARSDEN,U.HANEFELD,I.BENTO REVDAT 4 01-MAY-24 7O5R 1 REMARK REVDAT 3 07-DEC-22 7O5R 1 JRNL REVDAT 2 23-NOV-22 7O5R 1 JRNL REVDAT 1 26-OCT-22 7O5R 0 JRNL AUTH S.R.MARSDEN,H.J.WIJMA,M.K.F.MOHR,I.JUSTO,P.L.HAGEDOORN, JRNL AUTH 2 J.LAUSTSEN,C.M.JEFFRIES,D.SVERGUN,L.MESTROM,D.G.G.MCMILLAN, JRNL AUTH 3 I.BENTO,U.HANEFELD JRNL TITL SUBSTRATE INDUCED MOVEMENT OF THE METAL COFACTOR BETWEEN JRNL TITL 2 ACTIVE AND RESTING STATE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 61 13338 2022 JRNL REFN ESSN 1521-3773 JRNL PMID 36214476 JRNL DOI 10.1002/ANIE.202213338 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.841 REMARK 3 FREE R VALUE TEST SET COUNT : 2506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 464 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31600 REMARK 3 B22 (A**2) : -0.31600 REMARK 3 B33 (A**2) : 0.63300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.050 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.366 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3918 ; 0.013 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3629 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5328 ; 1.869 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8422 ; 0.631 ; 1.558 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 6.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ; 9.267 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;14.629 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4626 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 770 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 878 ; 0.238 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 89 ; 0.163 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1947 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 328 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 13 ; 0.195 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 12 ; 0.254 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 1.328 ; 1.197 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2048 ; 1.320 ; 1.196 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2567 ; 1.916 ; 1.792 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2568 ; 1.918 ; 1.793 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1870 ; 1.906 ; 1.406 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1862 ; 1.876 ; 1.407 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2754 ; 2.789 ; 2.033 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2755 ; 2.788 ; 2.033 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.7562 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : K, H, -L REMARK 3 TWIN FRACTION : 0.2438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7O5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292114631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : OXFORF-FNB REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51766 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 75.131 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 75.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.05900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: APO-SWHKA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, SODIUM CITRATE, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.77000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.65182 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.13133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 35.77000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 20.65182 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.13133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 35.77000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 20.65182 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.13133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.30364 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 150.26267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 41.30364 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 150.26267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 41.30364 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 150.26267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 K K B 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 423 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 448 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 599 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 612 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 615 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 623 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 626 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 627 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 628 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 629 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 628 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 630 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 634 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR B 170 O HOH B 408 1.57 REMARK 500 O HOH B 417 O HOH B 505 1.80 REMARK 500 O HOH A 417 O HOH A 565 1.82 REMARK 500 O HOH A 469 O HOH A 605 1.91 REMARK 500 O HOH B 507 O HOH B 533 2.03 REMARK 500 OD2 ASP B 48 O HOH B 401 2.04 REMARK 500 OG1 THR B 170 O HOH B 402 2.10 REMARK 500 O HOH A 465 O HOH A 531 2.13 REMARK 500 O HOH B 507 O HOH B 543 2.14 REMARK 500 O HOH A 463 O HOH A 540 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 551 O HOH B 621 3665 2.03 REMARK 500 O HOH B 404 O HOH B 449 2555 2.12 REMARK 500 O HOH A 587 O HOH A 603 2655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 145 CD GLU A 145 OE1 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 44 60.75 -108.64 REMARK 500 GLU A 145 19.41 -145.87 REMARK 500 ASP B 34 44.47 -75.87 REMARK 500 HIS B 44 63.88 -109.01 REMARK 500 GLU B 145 15.76 -151.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 147 0.12 SIDE CHAIN REMARK 500 ARG A 199 0.10 SIDE CHAIN REMARK 500 ARG B 112 0.09 SIDE CHAIN REMARK 500 ARG B 125 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 629 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B 631 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B 632 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 633 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH B 634 DISTANCE = 7.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 31 O REMARK 620 2 LEU A 33 O 76.6 REMARK 620 3 TYR A 35 O 102.5 86.5 REMARK 620 4 GLY A 63 O 86.3 162.9 98.8 REMARK 620 5 HOH A 434 O 75.5 104.2 168.1 69.4 REMARK 620 6 HOH A 563 O 153.5 77.2 79.8 119.7 107.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 116 OG REMARK 620 2 GLU A 145 OE1 46.6 REMARK 620 3 ASP A 171 OD2 46.6 3.3 REMARK 620 4 HOH A 403 O 44.3 4.4 2.3 REMARK 620 5 HOH A 405 O 51.1 5.3 4.5 6.9 REMARK 620 6 HOH A 418 O 48.9 4.1 2.3 4.7 2.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE1 REMARK 620 2 ASP A 171 OD2 76.1 REMARK 620 3 HOH A 403 O 78.0 91.0 REMARK 620 4 HOH A 432 O 154.4 91.3 80.0 REMARK 620 5 HOH A 481 O 116.8 96.5 164.7 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 31 O REMARK 620 2 LEU B 33 O 80.4 REMARK 620 3 TYR B 35 O 107.2 84.8 REMARK 620 4 GLY B 63 O 87.0 166.8 102.4 REMARK 620 5 HOH B 417 O 69.8 70.7 155.5 101.7 REMARK 620 6 HOH B 505 O 81.7 108.4 165.4 66.0 38.2 REMARK 620 7 HOH B 582 O 168.3 88.2 73.5 104.4 104.5 100.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 48 OD2 REMARK 620 2 ASP B 48 OD2 0.0 REMARK 620 3 HOH B 401 O 45.3 45.3 REMARK 620 4 HOH B 401 O 100.3 100.3 60.8 REMARK 620 5 HOH B 536 O 70.8 70.8 114.0 166.6 REMARK 620 6 HOH B 536 O 110.6 110.6 105.8 114.0 79.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 116 OG REMARK 620 2 GLU B 145 OE1 45.6 REMARK 620 3 ASP B 171 OD1 43.6 4.0 REMARK 620 4 ASP B 171 OD2 44.7 4.1 1.2 REMARK 620 5 HOH B 454 O 49.1 5.0 5.5 4.5 REMARK 620 6 HOH B 458 O 42.4 5.7 1.8 2.5 6.9 REMARK 620 7 HOH B 466 O 47.2 4.7 3.7 2.5 2.1 4.9 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7O5I RELATED DB: PDB REMARK 900 RELATED ID: 7NUJ RELATED DB: PDB REMARK 900 RELATED ID: 7NR1 RELATED DB: PDB REMARK 900 RELATED ID: 7NNK RELATED DB: PDB REMARK 900 RELATED ID: 6R62 RELATED DB: PDB DBREF 7O5R A 0 251 PDB 7O5R 7O5R 0 251 DBREF 7O5R B 0 251 PDB 7O5R 7O5R 0 251 SEQRES 1 A 252 HIS HIS ASN LYS VAL ARG THR CYS TRP ASN GLU GLY ARG SEQRES 2 A 252 PRO ALA LEU ALA GLY TRP LEU GLN LEU PRO GLY THR LEU SEQRES 3 A 252 HIS ALA GLU ALA LEU ALA ARG LEU ASP TYR ASP ALA VAL SEQRES 4 A 252 VAL ILE ASP MET GLN HIS SER PRO ILE ASP PHE GLY GLN SEQRES 5 A 252 VAL ALA PRO MET LEU ILE ALA ILE GLU LEU GLY GLY ALA SEQRES 6 A 252 GLU PRO PHE VAL ARG THR GLN VAL ASN ASP PRO SER ASP SEQRES 7 A 252 ILE MET LYS LEU LEU ASP ALA GLY ALA TYR GLY ILE ILE SEQRES 8 A 252 ALA PRO MET VAL ASN THR ARG ALA GLU ALA GLN THR LEU SEQRES 9 A 252 ALA SER ALA LEU HIS TYR SER PRO ARG GLY LEU ARG SER SEQRES 10 A 252 PHE GLY PRO ARG ARG PRO SER LEU ARG TYR GLY SER GLY SEQRES 11 A 252 TYR LEU ALA GLN ALA SER GLU THR VAL VAL GLY LEU ALA SEQRES 12 A 252 MET ILE GLU THR ARG GLU ALA LEU ALA ASN ILE ASP GLU SEQRES 13 A 252 ILE LEU SER VAL ASP GLY ILE ASP GLY VAL PHE ILE GLY SEQRES 14 A 252 PRO THR ASP LEU ALA LEU ASP LEU GLY HIS ALA PRO LEU SEQRES 15 A 252 VAL ASP THR GLU GLU ALA GLU VAL VAL SER ALA ILE ALA SEQRES 16 A 252 HIS VAL ARG GLU ARG ALA HIS ALA ALA GLY LYS ARG VAL SEQRES 17 A 252 GLY ILE PHE CYS GLY SER GLY GLY PHE ALA ARG VAL LYS SEQRES 18 A 252 LEU ALA GLU GLY PHE ASP PHE VAL THR ALA ALA PRO ASP SEQRES 19 A 252 LEU ALA MET LEU SER ALA ALA ALA ARG GLN VAL ILE ALA SEQRES 20 A 252 ASP ALA ARG ALA LEU SEQRES 1 B 252 HIS HIS ASN LYS VAL ARG THR CYS TRP ASN GLU GLY ARG SEQRES 2 B 252 PRO ALA LEU ALA GLY TRP LEU GLN LEU PRO GLY THR LEU SEQRES 3 B 252 HIS ALA GLU ALA LEU ALA ARG LEU ASP TYR ASP ALA VAL SEQRES 4 B 252 VAL ILE ASP MET GLN HIS SER PRO ILE ASP PHE GLY GLN SEQRES 5 B 252 VAL ALA PRO MET LEU ILE ALA ILE GLU LEU GLY GLY ALA SEQRES 6 B 252 GLU PRO PHE VAL ARG THR GLN VAL ASN ASP PRO SER ASP SEQRES 7 B 252 ILE MET LYS LEU LEU ASP ALA GLY ALA TYR GLY ILE ILE SEQRES 8 B 252 ALA PRO MET VAL ASN THR ARG ALA GLU ALA GLN THR LEU SEQRES 9 B 252 ALA SER ALA LEU HIS TYR SER PRO ARG GLY LEU ARG SER SEQRES 10 B 252 PHE GLY PRO ARG ARG PRO SER LEU ARG TYR GLY SER GLY SEQRES 11 B 252 TYR LEU ALA GLN ALA SER GLU THR VAL VAL GLY LEU ALA SEQRES 12 B 252 MET ILE GLU THR ARG GLU ALA LEU ALA ASN ILE ASP GLU SEQRES 13 B 252 ILE LEU SER VAL ASP GLY ILE ASP GLY VAL PHE ILE GLY SEQRES 14 B 252 PRO THR ASP LEU ALA LEU ASP LEU GLY HIS ALA PRO LEU SEQRES 15 B 252 VAL ASP THR GLU GLU ALA GLU VAL VAL SER ALA ILE ALA SEQRES 16 B 252 HIS VAL ARG GLU ARG ALA HIS ALA ALA GLY LYS ARG VAL SEQRES 17 B 252 GLY ILE PHE CYS GLY SER GLY GLY PHE ALA ARG VAL LYS SEQRES 18 B 252 LEU ALA GLU GLY PHE ASP PHE VAL THR ALA ALA PRO ASP SEQRES 19 B 252 LEU ALA MET LEU SER ALA ALA ALA ARG GLN VAL ILE ALA SEQRES 20 B 252 ASP ALA ARG ALA LEU HET MN A 301 1 HET MN A 302 1 HET K A 303 1 HET BR A 304 1 HET MN B 301 1 HET K B 302 1 HET K B 303 1 HETNAM MN MANGANESE (II) ION HETNAM K POTASSIUM ION HETNAM BR BROMIDE ION FORMUL 3 MN 3(MN 2+) FORMUL 5 K 3(K 1+) FORMUL 6 BR BR 1- FORMUL 10 HOH *464(H2 O) HELIX 1 AA1 ASN A 2 GLU A 10 1 9 HELIX 2 AA2 THR A 24 ARG A 32 1 9 HELIX 3 AA3 ASP A 48 GLY A 63 1 16 HELIX 4 AA4 ASP A 74 ALA A 84 1 11 HELIX 5 AA5 THR A 96 HIS A 108 1 13 HELIX 6 AA6 PRO A 119 GLY A 127 1 9 HELIX 7 AA7 GLY A 129 VAL A 138 1 10 HELIX 8 AA8 THR A 146 ASN A 152 1 7 HELIX 9 AA9 ASN A 152 SER A 158 1 7 HELIX 10 AB1 GLY A 168 LEU A 176 1 9 HELIX 11 AB2 GLU A 186 ALA A 203 1 18 HELIX 12 AB3 SER A 213 GLY A 224 1 12 HELIX 13 AB4 ASP A 233 ARG A 249 1 17 HELIX 14 AB5 ASN B 2 GLU B 10 1 9 HELIX 15 AB6 THR B 24 ARG B 32 1 9 HELIX 16 AB7 ASP B 48 GLY B 63 1 16 HELIX 17 AB8 ASP B 74 ALA B 84 1 11 HELIX 18 AB9 THR B 96 HIS B 108 1 13 HELIX 19 AC1 PRO B 119 GLY B 127 1 9 HELIX 20 AC2 SER B 128 VAL B 138 5 11 HELIX 21 AC3 THR B 146 ASN B 152 1 7 HELIX 22 AC4 ASN B 152 SER B 158 1 7 HELIX 23 AC5 GLY B 168 LEU B 176 1 9 HELIX 24 AC6 GLU B 186 ALA B 203 1 18 HELIX 25 AC7 SER B 213 GLU B 223 1 11 HELIX 26 AC8 ASP B 233 ARG B 249 1 17 SHEET 1 AA1 9 ALA A 14 LEU A 19 0 SHEET 2 AA1 9 ALA A 37 ASP A 41 1 O ASP A 41 N LEU A 19 SHEET 3 AA1 9 GLU A 65 ARG A 69 1 O PHE A 67 N ILE A 40 SHEET 4 AA1 9 GLY A 88 ALA A 91 1 O ILE A 90 N VAL A 68 SHEET 5 AA1 9 VAL A 139 ILE A 144 1 O VAL A 139 N ILE A 89 SHEET 6 AA1 9 GLY A 164 ILE A 167 1 O PHE A 166 N ALA A 142 SHEET 7 AA1 9 ARG A 206 PHE A 210 1 O GLY A 208 N ILE A 167 SHEET 8 AA1 9 PHE A 227 PRO A 232 1 O THR A 229 N ILE A 209 SHEET 9 AA1 9 ALA A 14 LEU A 19 1 N ALA A 16 O VAL A 228 SHEET 1 AA2 9 ALA B 14 LEU B 19 0 SHEET 2 AA2 9 ALA B 37 ASP B 41 1 O ASP B 41 N LEU B 19 SHEET 3 AA2 9 GLU B 65 ARG B 69 1 O PHE B 67 N ILE B 40 SHEET 4 AA2 9 GLY B 88 ALA B 91 1 O ILE B 90 N VAL B 68 SHEET 5 AA2 9 VAL B 139 ILE B 144 1 O LEU B 141 N ILE B 89 SHEET 6 AA2 9 GLY B 164 ILE B 167 1 O GLY B 164 N ALA B 142 SHEET 7 AA2 9 ARG B 206 PHE B 210 1 O GLY B 208 N ILE B 167 SHEET 8 AA2 9 PHE B 227 PRO B 232 1 O THR B 229 N ILE B 209 SHEET 9 AA2 9 ALA B 14 LEU B 19 1 N ALA B 16 O ALA B 230 LINK O ALA A 31 K K A 303 1555 1555 2.69 LINK O LEU A 33 K K A 303 1555 1555 2.67 LINK O TYR A 35 K K A 303 1555 1555 2.71 LINK O GLY A 63 K K A 303 1555 1555 2.96 LINK OG ASER A 116 MN A MN A 301 1555 3555 2.18 LINK OE1 GLU A 145 MN A MN A 301 1555 1555 1.83 LINK OE1 GLU A 145 MN B MN A 302 1555 1555 1.97 LINK OD2 ASP A 171 MN A MN A 301 1555 1555 1.75 LINK OD2 ASP A 171 MN B MN A 302 1555 1555 1.80 LINK MN A MN A 301 O HOH A 403 1555 1555 1.82 LINK MN A MN A 301 O HOH A 405 1555 2555 1.83 LINK MN A MN A 301 O HOH A 418 1555 2555 1.77 LINK MN B MN A 302 O HOH A 403 1555 1555 1.77 LINK MN B MN A 302 O HOH A 432 1555 1555 1.85 LINK MN B MN A 302 O BHOH A 481 1555 1555 1.79 LINK K K A 303 O HOH A 434 1555 1555 2.95 LINK K K A 303 O HOH A 563 1555 1555 2.93 LINK O ALA B 31 K K B 302 1555 1555 2.65 LINK O LEU B 33 K K B 302 1555 1555 2.70 LINK O TYR B 35 K K B 302 1555 1555 2.79 LINK OD2 ASP B 48 K K B 303 1555 1555 2.67 LINK OD2 ASP B 48 K K B 303 1555 2555 2.67 LINK O GLY B 63 K K B 302 1555 1555 2.91 LINK OG SER B 116 MN MN B 301 1555 2555 2.20 LINK OE1 GLU B 145 MN MN B 301 1555 1555 2.17 LINK OD1BASP B 171 MN MN B 301 1555 1555 2.75 LINK OD2AASP B 171 MN MN B 301 1555 1555 1.74 LINK MN MN B 301 O HOH B 454 1555 1555 1.84 LINK MN MN B 301 O HOH B 458 1555 1555 1.91 LINK MN MN B 301 O HOH B 466 1555 1555 1.85 LINK K K B 302 O HOH B 417 1555 1555 2.57 LINK K K B 302 O HOH B 505 1555 1555 2.87 LINK K K B 302 O HOH B 582 1555 1555 2.79 LINK K K B 303 O HOH B 401 1555 1555 2.62 LINK K K B 303 O HOH B 401 1555 3555 2.62 LINK K K B 303 O HOH B 536 1555 1555 2.40 LINK K K B 303 O HOH B 536 1555 3555 2.40 CISPEP 1 SER A 110 PRO A 111 0 -3.85 CISPEP 2 ALA A 230 ALA A 231 0 -10.66 CISPEP 3 SER B 110 PRO B 111 0 3.14 CISPEP 4 ALA B 230 ALA B 231 0 -10.39 CRYST1 71.540 71.540 225.394 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013978 0.008070 0.000000 0.00000 SCALE2 0.000000 0.016141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004437 0.00000