HEADER TRANSFERASE 13-APR-21 7O7K TITLE CRYSTAL STRUCTURE OF THE HUMAN DYRK1A KINASE DOMAIN BOUND TO TITLE 2 ABEMACICLIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 1A; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE COMPND 6 MINIBRAIN HOMOLOG,HMNB; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS SERINE/THREONINE KINASE, CMGC KINASE, DUAL SPECIFICITY TYROSINE- KEYWDS 2 PHOSPHORYLATION-REGULATED KINASE 1A, DYRK1A, TRANSCRIPTION, KEYWDS 3 ABEMACICLIB, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.H.KALTHEUNER,K.ANAND,M.GEYER REVDAT 4 09-OCT-24 7O7K 1 REMARK REVDAT 3 31-JAN-24 7O7K 1 REMARK REVDAT 2 01-DEC-21 7O7K 1 JRNL REVDAT 1 24-NOV-21 7O7K 0 JRNL AUTH I.H.KALTHEUNER,K.ANAND,J.MOECKING,R.DUSTER,J.WANG,N.S.GRAY, JRNL AUTH 2 M.GEYER JRNL TITL ABEMACICLIB IS A POTENT INHIBITOR OF DYRK1A AND HIP KINASES JRNL TITL 2 INVOLVED IN TRANSCRIPTIONAL REGULATION. JRNL REF NAT COMMUN V. 12 6607 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34785661 JRNL DOI 10.1038/S41467-021-26935-Z REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 85610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6900 - 5.6500 1.00 2936 155 0.1773 0.1987 REMARK 3 2 5.6500 - 4.4800 0.99 2764 145 0.1558 0.1754 REMARK 3 3 4.4800 - 3.9200 1.00 2793 148 0.1421 0.1756 REMARK 3 4 3.9200 - 3.5600 1.00 2773 146 0.1591 0.1541 REMARK 3 5 3.5600 - 3.3000 1.00 2736 144 0.1773 0.2125 REMARK 3 6 3.3000 - 3.1100 1.00 2755 145 0.1828 0.2042 REMARK 3 7 3.1100 - 2.9500 1.00 2725 144 0.1917 0.2326 REMARK 3 8 2.9500 - 2.8300 1.00 2727 143 0.2062 0.2073 REMARK 3 9 2.8300 - 2.7200 1.00 2716 143 0.2038 0.2338 REMARK 3 10 2.7200 - 2.6200 0.99 2683 141 0.1901 0.2210 REMARK 3 11 2.6200 - 2.5400 1.00 2739 144 0.1936 0.2474 REMARK 3 12 2.5400 - 2.4700 1.00 2689 142 0.1891 0.2170 REMARK 3 13 2.4700 - 2.4000 1.00 2701 142 0.1844 0.2071 REMARK 3 14 2.4000 - 2.3400 1.00 2703 142 0.1795 0.2349 REMARK 3 15 2.3400 - 2.2900 1.00 2705 143 0.1771 0.1855 REMARK 3 16 2.2900 - 2.2400 1.00 2695 143 0.1738 0.2684 REMARK 3 17 2.2400 - 2.2000 1.00 2695 141 0.1717 0.2094 REMARK 3 18 2.2000 - 2.1600 1.00 2705 141 0.1757 0.2052 REMARK 3 19 2.1600 - 2.1200 1.00 2717 143 0.1744 0.2382 REMARK 3 20 2.1200 - 2.0800 1.00 2689 142 0.1843 0.2593 REMARK 3 21 2.0800 - 2.0500 1.00 2697 142 0.1897 0.2239 REMARK 3 22 2.0500 - 2.0200 1.00 2675 141 0.2032 0.2500 REMARK 3 23 2.0200 - 1.9900 0.99 2681 142 0.2080 0.2398 REMARK 3 24 1.9900 - 1.9600 1.00 2669 140 0.2161 0.2573 REMARK 3 25 1.9600 - 1.9300 0.99 2679 142 0.2218 0.2725 REMARK 3 26 1.9300 - 1.9100 1.00 2677 141 0.2366 0.2913 REMARK 3 27 1.9100 - 1.8800 0.99 2658 140 0.2579 0.2990 REMARK 3 28 1.8800 - 1.8600 1.00 2684 141 0.2815 0.3244 REMARK 3 29 1.8600 - 1.8400 0.99 2679 141 0.2919 0.2892 REMARK 3 30 1.8400 - 1.8200 0.96 2582 136 0.3042 0.3368 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.880 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 23.0427 7.0928 16.7133 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.3172 REMARK 3 T33: 0.2437 T12: -0.0157 REMARK 3 T13: -0.0208 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.6187 L22: 1.9269 REMARK 3 L33: 0.5566 L12: -0.5429 REMARK 3 L13: -0.2303 L23: 0.3784 REMARK 3 S TENSOR REMARK 3 S11: 0.0236 S12: 0.0536 S13: -0.0087 REMARK 3 S21: -0.0175 S22: -0.0229 S23: 0.0700 REMARK 3 S31: 0.0506 S32: -0.0135 S33: -0.0048 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 134 THROUGH 159 OR REMARK 3 RESID 161 THROUGH 204 OR RESID 206 REMARK 3 THROUGH 225 OR RESID 227 THROUGH 409 OR REMARK 3 RESID 413 THROUGH 480 OR RESID 801 REMARK 3 THROUGH 914)) REMARK 3 SELECTION : (CHAIN B AND (RESID 134 THROUGH 159 OR REMARK 3 RESID 161 THROUGH 204 OR RESID 206 REMARK 3 THROUGH 225 OR RESID 227 THROUGH 480 OR REMARK 3 RESID 801 THROUGH 908)) REMARK 3 ATOM PAIRS NUMBER : 3365 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85615 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 44.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2VX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-16% PEG 4000, 0.1 M SODIUM CITRATE REMARK 280 (PH 6.5) AND 0.1 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.35250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.24850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.99250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.24850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.35250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.99250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 125 REMARK 465 MET A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 LYS A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 ARG A 133 REMARK 465 GLY A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 ALA A 483 REMARK 465 ASP A 484 REMARK 465 GLU A 485 REMARK 465 SER B 125 REMARK 465 MET B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 LYS B 130 REMARK 465 LYS B 131 REMARK 465 GLU B 132 REMARK 465 LYS B 409 REMARK 465 ASP B 410 REMARK 465 GLY B 411 REMARK 465 LYS B 481 REMARK 465 THR B 482 REMARK 465 ALA B 483 REMARK 465 ASP B 484 REMARK 465 GLU B 485 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 212 CG CD CE NZ REMARK 480 ARG A 317 CG NH2 REMARK 480 ARG B 133 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 175 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OHB FLC A 802 LI LI A 813 1.38 REMARK 500 OHB FLC B 503 LI LI B 516 1.48 REMARK 500 OB2 FLC B 502 LI LI B 516 1.50 REMARK 500 HOB FLC B 502 LI LI B 516 1.51 REMARK 500 OB2 FLC A 801 LI LI A 813 1.54 REMARK 500 OHB FLC A 801 LI LI A 813 1.56 REMARK 500 OHB FLC B 502 LI LI B 516 1.64 REMARK 500 OG SER A 301 O HOH A 901 2.13 REMARK 500 CBC FLC B 502 LI LI B 516 2.14 REMARK 500 O ARG B 392 NZ LYS B 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 472 O HOH B 756 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 239 CD GLU A 239 OE2 0.133 REMARK 500 GLU B 203 CG GLU B 203 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 239 OE1 - CD - OE2 ANGL. DEV. = -11.7 DEGREES REMARK 500 LYS A 409 CD - CE - NZ ANGL. DEV. = -25.4 DEGREES REMARK 500 ASP A 410 OD1 - CG - OD2 ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP A 410 CB - CG - OD1 ANGL. DEV. = 24.8 DEGREES REMARK 500 ASP A 410 CB - CG - OD2 ANGL. DEV. = -13.3 DEGREES REMARK 500 THR B 408 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 THR B 408 CA - CB - OG1 ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 158 -50.09 -132.78 REMARK 500 ASP A 162 -60.51 -96.33 REMARK 500 CYS A 286 -2.20 74.49 REMARK 500 ASP A 287 36.86 -145.15 REMARK 500 ASP A 307 80.41 71.95 REMARK 500 GLN A 323 152.25 76.66 REMARK 500 ASP A 339 -157.60 -145.72 REMARK 500 SER A 362 65.36 -100.16 REMARK 500 ARG B 158 -50.94 -132.95 REMARK 500 ASP B 162 -63.49 -96.32 REMARK 500 ASP B 214 59.21 -144.88 REMARK 500 CYS B 286 -2.94 73.06 REMARK 500 ASP B 287 37.88 -143.30 REMARK 500 ASP B 307 80.66 69.65 REMARK 500 GLN B 316 -79.88 -112.52 REMARK 500 GLN B 323 151.66 77.46 REMARK 500 ASP B 339 -157.99 -146.23 REMARK 500 SER B 362 66.52 -100.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1096 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B 779 DISTANCE = 6.39 ANGSTROMS DBREF 7O7K A 127 485 UNP Q13627 DYR1A_HUMAN 127 485 DBREF 7O7K B 127 485 UNP Q13627 DYR1A_HUMAN 127 485 SEQADV 7O7K SER A 125 UNP Q13627 EXPRESSION TAG SEQADV 7O7K MET A 126 UNP Q13627 EXPRESSION TAG SEQADV 7O7K SER B 125 UNP Q13627 EXPRESSION TAG SEQADV 7O7K MET B 126 UNP Q13627 EXPRESSION TAG SEQRES 1 A 361 SER MET SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN SEQRES 2 A 361 ASP GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS SEQRES 3 A 361 ASN GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER SEQRES 4 A 361 LEU ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA SEQRES 5 A 361 TYR ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE SEQRES 6 A 361 ILE LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE SEQRES 7 A 361 GLU VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR SEQRES 8 A 361 GLU MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE SEQRES 9 A 361 MET PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SEQRES 10 A 361 SER TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE SEQRES 11 A 361 ARG GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN SEQRES 12 A 361 GLN MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU SEQRES 13 A 361 LEU SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE SEQRES 14 A 361 LEU LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL SEQRES 15 A 361 ASP PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR SEQRES 16 A 361 GLN PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL SEQRES 17 A 361 LEU LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SEQRES 18 A 361 SER LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU SEQRES 19 A 361 PRO LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN SEQRES 20 A 361 LYS ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE SEQRES 21 A 361 LEU ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS SEQRES 22 A 361 LEU PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP SEQRES 23 A 361 GLY LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU SEQRES 24 A 361 HIS ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY SEQRES 25 A 361 ARG ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR SEQRES 26 A 361 LEU LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR SEQRES 27 A 361 ASP PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN SEQRES 28 A 361 HIS SER PHE PHE LYS LYS THR ALA ASP GLU SEQRES 1 B 361 SER MET SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN SEQRES 2 B 361 ASP GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS SEQRES 3 B 361 ASN GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER SEQRES 4 B 361 LEU ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA SEQRES 5 B 361 TYR ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE SEQRES 6 B 361 ILE LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE SEQRES 7 B 361 GLU VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR SEQRES 8 B 361 GLU MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE SEQRES 9 B 361 MET PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SEQRES 10 B 361 SER TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE SEQRES 11 B 361 ARG GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN SEQRES 12 B 361 GLN MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU SEQRES 13 B 361 LEU SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE SEQRES 14 B 361 LEU LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL SEQRES 15 B 361 ASP PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR SEQRES 16 B 361 GLN PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL SEQRES 17 B 361 LEU LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SEQRES 18 B 361 SER LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU SEQRES 19 B 361 PRO LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN SEQRES 20 B 361 LYS ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE SEQRES 21 B 361 LEU ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS SEQRES 22 B 361 LEU PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP SEQRES 23 B 361 GLY LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU SEQRES 24 B 361 HIS ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY SEQRES 25 B 361 ARG ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR SEQRES 26 B 361 LEU LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR SEQRES 27 B 361 ASP PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN SEQRES 28 B 361 HIS SER PHE PHE LYS LYS THR ALA ASP GLU MODRES 7O7K PTR A 321 TYR MODIFIED RESIDUE MODRES 7O7K PTR B 321 TYR MODIFIED RESIDUE HET PTR A 321 16 HET PTR B 321 16 HET FLC A 801 13 HET FLC A 802 13 HET 6ZV A 803 37 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET EDO A 807 4 HET EDO A 808 4 HET EDO A 809 4 HET EDO A 810 4 HET PEG A 811 7 HET EDO A 812 4 HET LI A 813 1 HET EDO B 501 4 HET FLC B 502 17 HET FLC B 503 18 HET 6ZV B 504 37 HET EDO B 505 4 HET EDO B 506 4 HET EDO B 507 4 HET EDO B 508 4 HET EDO B 509 4 HET EDO B 510 4 HET EDO B 511 4 HET EDO B 512 4 HET EDO B 513 4 HET EDO B 514 4 HET EDO B 515 4 HET LI B 516 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM FLC CITRATE ANION HETNAM 6ZV N-{5-[(4-ETHYLPIPERAZIN-1-YL)METHYL]PYRIDIN-2-YL}-5- HETNAM 2 6ZV FLUORO-4-[4-FLUORO-2-METHYL-1-(PROPAN-2-YL)-1H- HETNAM 3 6ZV BENZIMIDAZOL-6-YL]PY RIMIDIN-2-AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM LI LITHIUM ION HETSYN PTR PHOSPHONOTYROSINE HETSYN 6ZV ABEMACICLIB HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 FLC 4(C6 H5 O7 3-) FORMUL 5 6ZV 2(C27 H32 F2 N8) FORMUL 6 EDO 20(C2 H6 O2) FORMUL 13 PEG C4 H10 O3 FORMUL 15 LI 2(LI 1+) FORMUL 32 HOH *375(H2 O) HELIX 1 AA1 TYR A 136 TYR A 140 5 5 HELIX 2 AA2 LYS A 193 HIS A 213 1 21 HELIX 3 AA3 LEU A 245 THR A 252 1 8 HELIX 4 AA4 SER A 258 ALA A 277 1 20 HELIX 5 AA5 LYS A 289 GLU A 291 5 3 HELIX 6 AA6 SER A 324 ARG A 328 5 5 HELIX 7 AA7 SER A 329 LEU A 334 1 6 HELIX 8 AA8 LEU A 340 GLY A 357 1 18 HELIX 9 AA9 ASN A 365 GLY A 378 1 14 HELIX 10 AB1 PRO A 381 ASP A 386 1 6 HELIX 11 AB2 LYS A 390 PHE A 394 1 5 HELIX 12 AB3 LYS A 422 LEU A 427 1 6 HELIX 13 AB4 GLY A 433 ARG A 437 5 5 HELIX 14 AB5 THR A 445 LEU A 460 1 16 HELIX 15 AB6 GLN A 469 GLN A 475 1 7 HELIX 16 AB7 HIS A 476 LYS A 480 5 5 HELIX 17 AB8 TYR B 136 TYR B 140 5 5 HELIX 18 AB9 LYS B 193 HIS B 213 1 21 HELIX 19 AC1 LEU B 245 THR B 252 1 8 HELIX 20 AC2 SER B 258 ALA B 277 1 20 HELIX 21 AC3 LYS B 289 GLU B 291 5 3 HELIX 22 AC4 SER B 324 ARG B 328 5 5 HELIX 23 AC5 SER B 329 LEU B 334 1 6 HELIX 24 AC6 LEU B 340 GLY B 357 1 18 HELIX 25 AC7 ASN B 365 GLY B 378 1 14 HELIX 26 AC8 PRO B 381 ASP B 386 1 6 HELIX 27 AC9 LYS B 390 PHE B 394 1 5 HELIX 28 AD1 LYS B 422 GLY B 428 1 7 HELIX 29 AD2 GLY B 433 ARG B 437 5 5 HELIX 30 AD3 THR B 445 LEU B 460 1 16 HELIX 31 AD4 GLN B 469 GLN B 475 1 7 HELIX 32 AD5 HIS B 476 LYS B 480 5 5 SHEET 1 AA1 6 LYS A 154 TRP A 155 0 SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155 SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O LYS A 175 N SER A 163 SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O VAL A 185 N ALA A 176 SHEET 5 AA1 6 HIS A 233 GLU A 239 -1 O LEU A 236 N LYS A 188 SHEET 6 AA1 6 LEU A 224 PHE A 230 -1 N ARG A 226 O VAL A 237 SHEET 1 AA2 3 TYR A 243 ASN A 244 0 SHEET 2 AA2 3 ILE A 293 LEU A 295 -1 O LEU A 295 N TYR A 243 SHEET 3 AA2 3 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294 SHEET 1 AA3 2 ILE A 283 ILE A 284 0 SHEET 2 AA3 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284 SHEET 1 AA4 2 PHE A 395 LYS A 397 0 SHEET 2 AA4 2 TRP A 403 LEU A 405 -1 O ASN A 404 N GLU A 396 SHEET 1 AA5 6 LYS B 154 TRP B 155 0 SHEET 2 AA5 6 TYR B 159 GLY B 168 -1 O TYR B 159 N TRP B 155 SHEET 3 AA5 6 GLY B 171 ASP B 178 -1 O VAL B 173 N ILE B 165 SHEET 4 AA5 6 GLU B 183 ILE B 190 -1 O VAL B 185 N ALA B 176 SHEET 5 AA5 6 HIS B 233 GLU B 239 -1 O LEU B 234 N ILE B 190 SHEET 6 AA5 6 LEU B 224 PHE B 230 -1 N ARG B 226 O VAL B 237 SHEET 1 AA6 3 TYR B 243 ASN B 244 0 SHEET 2 AA6 3 ILE B 293 LEU B 295 -1 O LEU B 295 N TYR B 243 SHEET 3 AA6 3 ILE B 303 ILE B 305 -1 O LYS B 304 N LEU B 294 SHEET 1 AA7 2 ILE B 283 ILE B 284 0 SHEET 2 AA7 2 CYS B 312 GLN B 313 -1 O CYS B 312 N ILE B 284 SHEET 1 AA8 2 PHE B 395 LYS B 397 0 SHEET 2 AA8 2 TRP B 403 LEU B 405 -1 O ASN B 404 N GLU B 396 LINK C GLN A 320 N PTR A 321 1555 1555 1.31 LINK C PTR A 321 N ILE A 322 1555 1555 1.33 LINK C GLN B 320 N PTR B 321 1555 1555 1.32 LINK C PTR B 321 N ILE B 322 1555 1555 1.34 LINK OB1 FLC A 802 LI LI A 813 1555 1555 2.01 LINK OB1 FLC B 503 LI LI B 516 1555 1555 1.89 CRYST1 76.705 109.985 112.497 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013037 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008889 0.00000