HEADER ELECTRON TRANSPORT 17-APR-21 7O9U TITLE SOLUTION STRUCTURE OF OXIDIZED CYTOCHROME C552 FROM THIOALKALIVIBRIO TITLE 2 PARADOXUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C552; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THIOALKALIVIBRIO PARADOXUS ARH 1; SOURCE 3 ORGANISM_TAXID: 713585; SOURCE 4 GENE: WP_006748979.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS THIOCYANATE DEHYDROGENASE ELECTRON ACCEPTOR, CYTOCHROME C552, CLASS I KEYWDS 2 CYTOCHROME C, HEMEPROTEIN, PERIPLASMIC, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR V.V.BRITIKOV,E.V.BRITIKOVA,D.A.ALTUKHOV,V.I.TIMOFEEV,N.I.DERGOUSOVA, AUTHOR 2 T.V.RAKITINA,T.V.TIKHONOVA,S.A.USANOV,V.O.POPOV,E.V.BOCHAROV REVDAT 4 20-NOV-24 7O9U 1 REMARK REVDAT 3 14-JUN-23 7O9U 1 REMARK REVDAT 2 11-JAN-23 7O9U 1 JRNL REVDAT 1 05-MAY-21 7O9U 0 SPRSDE 05-MAY-21 7O9U 6TK0 JRNL AUTH V.V.BRITIKOV,E.V.BOCHAROV,E.V.BRITIKOVA,N.I.DERGOUSOVA, JRNL AUTH 2 O.G.KULIKOVA,A.Y.SOLOVIEVA,N.S.SHIPKOV,L.A.VARFOLOMEEVA, JRNL AUTH 3 T.V.TIKHONOVA,V.I.TIMOFEEV,E.V.SHTYKOVA,D.A.ALTUKHOV, JRNL AUTH 4 S.A.USANOV,A.S.ARSENIEV,T.V.RAKITINA,V.O.POPOV JRNL TITL UNUSUAL CYTOCHROME C 552 FROM THIOALKALIVIBRIO PARADOXUS : JRNL TITL 2 SOLUTION NMR STRUCTURE AND INTERACTION WITH THIOCYANATE JRNL TITL 3 DEHYDROGENASE. JRNL REF INT J MOL SCI V. 23 2022 JRNL REFN ESSN 1422-0067 JRNL PMID 36077365 JRNL DOI 10.3390/IJMS23179969 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 3.2 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7O9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115074. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 CYTOCHROME C552, 95% H2O/5% D2O; REMARK 210 0.6 MM CYTOCHROME C552, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCO; 3D HCACO; 3D HNHA; 3D REMARK 210 HCCH-TOCSY; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D H(CCO)NH; 2D 1H- REMARK 210 1H NOESY; 2D 1H-1H TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.2, CCPNMR ANALYSIS, REMARK 210 ARIA 2.3, CNS 1.21 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 8 -55.54 177.85 REMARK 500 1 HIS A 13 135.71 -178.47 REMARK 500 1 HIS A 14 47.81 -152.39 REMARK 500 1 HIS A 18 -164.24 49.96 REMARK 500 1 SER A 22 -80.36 -70.89 REMARK 500 1 HIS A 54 -31.55 -135.78 REMARK 500 1 THR A 62 -45.52 -142.29 REMARK 500 1 ASP A 74 161.11 -39.90 REMARK 500 1 PRO A 75 167.42 -41.33 REMARK 500 1 HIS A 137 -160.21 -178.34 REMARK 500 1 ASP A 150 -76.72 -103.98 REMARK 500 1 HIS A 151 102.18 61.35 REMARK 500 1 HIS A 152 73.07 55.81 REMARK 500 2 ASP A 2 -63.22 -153.64 REMARK 500 2 SER A 7 73.74 -101.31 REMARK 500 2 ASP A 16 -64.01 -126.89 REMARK 500 2 HIS A 17 101.27 64.46 REMARK 500 2 HIS A 20 -76.67 -101.69 REMARK 500 2 THR A 62 -44.78 -143.51 REMARK 500 2 ASP A 74 161.56 -38.28 REMARK 500 2 PRO A 75 166.76 -40.74 REMARK 500 2 PRO A 102 -31.74 -37.47 REMARK 500 2 MET A 103 -54.21 -163.38 REMARK 500 2 PHE A 106 25.47 -77.70 REMARK 500 2 HIS A 137 102.83 68.61 REMARK 500 2 SER A 138 -56.50 -173.09 REMARK 500 2 HIS A 147 -82.49 64.37 REMARK 500 2 HIS A 148 37.91 -175.58 REMARK 500 2 HIS A 152 164.36 61.64 REMARK 500 3 ASP A 2 154.84 63.08 REMARK 500 3 SER A 7 -166.34 -59.58 REMARK 500 3 HIS A 15 -64.78 -131.72 REMARK 500 3 ASP A 16 119.11 65.05 REMARK 500 3 HIS A 17 -63.58 -104.97 REMARK 500 3 TRP A 24 151.20 -49.66 REMARK 500 3 HIS A 54 -33.47 -133.06 REMARK 500 3 THR A 62 -45.50 -143.22 REMARK 500 3 ASP A 74 161.96 -41.05 REMARK 500 3 PRO A 75 166.90 -40.99 REMARK 500 3 HIS A 137 -178.26 -170.48 REMARK 500 3 ASP A 150 119.60 -166.22 REMARK 500 3 HIS A 151 134.02 65.81 REMARK 500 4 ASP A 8 64.49 -168.47 REMARK 500 4 ASP A 16 75.40 -151.65 REMARK 500 4 HIS A 20 -74.10 -49.95 REMARK 500 4 SER A 22 -73.05 69.60 REMARK 500 4 GLU A 25 97.25 -65.63 REMARK 500 4 HIS A 54 -31.82 -134.09 REMARK 500 4 THR A 62 -45.55 -143.26 REMARK 500 4 ASP A 74 161.88 -41.95 REMARK 500 REMARK 500 THIS ENTRY HAS 302 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 59 NE2 REMARK 620 2 HEC A 201 NA 91.5 REMARK 620 3 HEC A 201 NB 89.2 89.9 REMARK 620 4 HEC A 201 NC 88.9 179.5 90.4 REMARK 620 5 HEC A 201 ND 90.3 89.7 179.3 90.1 REMARK 620 6 MET A 103 SD 177.2 91.2 91.4 88.3 89.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34618 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF OXIDIZED CYTOCHROME C552 FROM REMARK 900 THIOALKALIVIBRIO PARADOXUS DBREF 7O9U A 1 153 PDB 7O9U 7O9U 1 153 SEQRES 1 A 153 MET ASP ILE GLY ILE ASN SER ASP PRO HIS PRO PRO HIS SEQRES 2 A 153 HIS HIS ASP HIS HIS GLY HIS GLY SER GLY TRP GLU VAL SEQRES 3 A 153 PRO GLU ALA GLU ILE HIS ARG GLU ASN PRO ILE PRO PRO SEQRES 4 A 153 ASP ALA ARG SER LEU ASP GLN GLY GLY VAL LEU TYR ALA SEQRES 5 A 153 GLU HIS CYS VAL ARG CYS HIS GLY GLU THR LEU ARG GLY SEQRES 6 A 153 ASP GLY PRO ASP ALA HIS ASP LEU ASP PRO PRO VAL ALA SEQRES 7 A 153 ASP LEU VAL GLU HIS ALA PRO HIS HIS SER ASP GLY ASP SEQRES 8 A 153 LEU ALA TYR ARG VAL ARG ILE GLY ARG GLY PRO MET PRO SEQRES 9 A 153 GLY PHE GLY ASP ALA LEU ASP GLU ARG ASP ILE TRP ASP SEQRES 10 A 153 LEU VAL ASN PHE MET ARG ASP ARG ALA GLN GLY ALA ALA SEQRES 11 A 153 LEU ALA GLY THR ASN GLY HIS SER PRO ASP HIS ALA ALA SEQRES 12 A 153 GLY ASP HIS HIS HIS GLY ASP HIS HIS HIS HET HEC A 201 75 HETNAM HEC HEME C FORMUL 2 HEC C34 H34 FE N4 O4 HELIX 1 AA1 PRO A 27 HIS A 32 1 6 HELIX 2 AA2 ASP A 40 CYS A 55 1 16 HELIX 3 AA3 CYS A 55 GLY A 60 1 6 HELIX 4 AA4 ASP A 79 ALA A 84 1 6 HELIX 5 AA5 PRO A 85 HIS A 87 5 3 HELIX 6 AA6 SER A 88 ILE A 98 1 11 HELIX 7 AA7 ASP A 111 ALA A 132 1 22 LINK SG CYS A 55 CAB HEC A 201 1555 1555 1.83 LINK SG CYS A 58 CAC HEC A 201 1555 1555 1.83 LINK NE2 HIS A 59 FE HEC A 201 1555 1555 2.10 LINK SD MET A 103 FE HEC A 201 1555 1555 2.39 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1