HEADER SIGNALING PROTEIN 20-APR-21 7OB0 TITLE STRUCTURE OF RSLOV D2 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOV PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES (STRAIN ATCC 17025 / SOURCE 3 ATH 2.4.3); SOURCE 4 ORGANISM_TAXID: 349102; SOURCE 5 STRAIN: ATCC 17025 / ATH 2.4.3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOTORECEPTOR, LIGHT-OXYGEN-VOLTAGE, FLAVIN, PER-ARNT-SIM, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MOEGLICH,T.G.A.KRAFFT,M.WEYAND REVDAT 3 31-JAN-24 7OB0 1 REMARK REVDAT 2 07-JUL-21 7OB0 1 JRNL REVDAT 1 30-JUN-21 7OB0 0 JRNL AUTH J.DIETLER,R.SCHUBERT,T.G.A.KRAFFT,S.MEILER,S.KAINRATH, JRNL AUTH 2 F.RICHTER,K.SCHWEIMER,M.WEYAND,H.JANOVJAK,A.MOGLICH JRNL TITL A LIGHT-OXYGEN-VOLTAGE RECEPTOR INTEGRATES LIGHT AND JRNL TITL 2 TEMPERATURE. JRNL REF J.MOL.BIOL. V. 433 67107 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34146595 JRNL DOI 10.1016/J.JMB.2021.167107 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 55580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9300 - 4.6800 0.99 3814 150 0.1719 0.1847 REMARK 3 2 4.6800 - 3.7200 0.99 3621 143 0.1447 0.1622 REMARK 3 3 3.7200 - 3.2500 0.99 3592 141 0.1657 0.1981 REMARK 3 4 3.2500 - 2.9500 1.00 3596 141 0.1888 0.2677 REMARK 3 5 2.9500 - 2.7400 1.00 3572 140 0.1877 0.2511 REMARK 3 6 2.7400 - 2.5800 1.00 3556 140 0.1901 0.2306 REMARK 3 7 2.5800 - 2.4500 1.00 3571 140 0.1883 0.2280 REMARK 3 8 2.4500 - 2.3400 1.00 3538 139 0.1817 0.2692 REMARK 3 9 2.3400 - 2.2500 1.00 3526 138 0.1765 0.2112 REMARK 3 10 2.2500 - 2.1700 1.00 3540 139 0.1774 0.2571 REMARK 3 11 2.1700 - 2.1100 1.00 3542 139 0.1791 0.2431 REMARK 3 12 2.1100 - 2.0500 1.00 3516 138 0.1767 0.2320 REMARK 3 13 2.0500 - 1.9900 1.00 3513 138 0.1905 0.2404 REMARK 3 14 1.9900 - 1.9400 1.00 3511 138 0.2127 0.2590 REMARK 3 15 1.9400 - 1.9000 0.98 3471 137 0.2231 0.2858 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.084 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5789 REMARK 3 ANGLE : 0.918 7881 REMARK 3 CHIRALITY : 0.050 836 REMARK 3 PLANARITY : 0.009 1063 REMARK 3 DIHEDRAL : 15.059 860 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 20 THROUGH 120) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9816 9.0770 -18.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.1537 REMARK 3 T33: 0.1553 T12: 0.0507 REMARK 3 T13: -0.0206 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.9023 L22: 0.8382 REMARK 3 L33: 1.7432 L12: -0.1224 REMARK 3 L13: -0.4307 L23: -0.0637 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.0713 S13: 0.1105 REMARK 3 S21: 0.0253 S22: 0.0711 S23: 0.0786 REMARK 3 S31: -0.2248 S32: -0.3203 S33: 0.0400 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 20 THROUGH 120) REMARK 3 ORIGIN FOR THE GROUP (A): -39.8355 -4.8915 -2.3635 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.1977 REMARK 3 T33: 0.1606 T12: 0.0657 REMARK 3 T13: -0.0140 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 0.9994 L22: 1.4837 REMARK 3 L33: 1.2596 L12: -0.5169 REMARK 3 L13: -0.3616 L23: -0.0290 REMARK 3 S TENSOR REMARK 3 S11: 0.1428 S12: 0.1072 S13: -0.3181 REMARK 3 S21: -0.0783 S22: -0.0436 S23: -0.2100 REMARK 3 S31: 0.1215 S32: 0.4617 S33: 0.1436 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 20 THROUGH 120) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0068 6.1084 18.7946 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.2766 REMARK 3 T33: 0.1260 T12: 0.0641 REMARK 3 T13: 0.0568 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.9723 L22: 1.3268 REMARK 3 L33: 2.2332 L12: 0.7458 REMARK 3 L13: -0.9806 L23: -1.0952 REMARK 3 S TENSOR REMARK 3 S11: 0.2531 S12: -0.1885 S13: 0.1424 REMARK 3 S21: 0.4086 S22: 0.1335 S23: 0.3882 REMARK 3 S31: -0.6485 S32: -0.5014 S33: 0.9583 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 20 THROUGH 120) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1543 -13.1719 -38.6219 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.0636 REMARK 3 T33: 0.1216 T12: 0.1018 REMARK 3 T13: 0.0225 T23: -0.0582 REMARK 3 L TENSOR REMARK 3 L11: 1.1188 L22: 2.6693 REMARK 3 L33: 1.1903 L12: -0.6493 REMARK 3 L13: 0.3484 L23: 0.7729 REMARK 3 S TENSOR REMARK 3 S11: 0.1939 S12: 0.4913 S13: -0.1526 REMARK 3 S21: -0.4609 S22: -0.1268 S23: -0.3068 REMARK 3 S31: 0.4438 S32: 0.6731 S33: -0.0112 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 128 THROUGH 174) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2203 5.7965 -29.5513 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.0682 REMARK 3 T33: 0.1503 T12: -0.0251 REMARK 3 T13: -0.0072 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.8544 L22: 0.8736 REMARK 3 L33: 0.2794 L12: -0.2261 REMARK 3 L13: -0.0336 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: 0.1217 S13: 0.1739 REMARK 3 S21: -0.2139 S22: -0.0497 S23: -0.0889 REMARK 3 S31: -0.0401 S32: 0.1050 S33: -0.0869 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 128 THROUGH 174) REMARK 3 ORIGIN FOR THE GROUP (A): -49.5993 5.2545 7.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.1120 T22: 0.1527 REMARK 3 T33: 0.1365 T12: -0.0139 REMARK 3 T13: -0.0044 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.1554 L22: 0.6414 REMARK 3 L33: 0.7712 L12: -0.5191 REMARK 3 L13: -0.4160 L23: 0.3355 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.2975 S13: 0.1110 REMARK 3 S21: 0.1206 S22: -0.0491 S23: -0.1548 REMARK 3 S31: -0.1329 S32: 0.1448 S33: 0.0054 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 128 THROUGH 174) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9955 5.0126 5.4535 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.1571 REMARK 3 T33: 0.1069 T12: -0.0035 REMARK 3 T13: 0.0035 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.0895 L22: 0.4481 REMARK 3 L33: 0.9013 L12: -0.2629 REMARK 3 L13: -0.5642 L23: -0.0310 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: 0.0720 S13: -0.0076 REMARK 3 S21: -0.1120 S22: -0.0779 S23: 0.0749 REMARK 3 S31: -0.0610 S32: -0.1883 S33: -0.0196 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 128 THROUGH 174) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6869 -2.7629 -26.4503 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.0568 REMARK 3 T33: 0.1299 T12: 0.0060 REMARK 3 T13: 0.0015 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.7730 L22: 1.0180 REMARK 3 L33: 0.8155 L12: -0.3021 REMARK 3 L13: -0.1632 L23: 0.4943 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: -0.3317 S13: 0.0176 REMARK 3 S21: 0.0424 S22: 0.0396 S23: -0.0287 REMARK 3 S31: 0.1962 S32: 0.2682 S33: -0.0728 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OB0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER IMUS MICROFOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.12.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55587 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.930 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 17.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25300 REMARK 200 FOR SHELL : 5.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4HIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE PH 8.0, 22 %(W/V) PEG REMARK 280 1000, 0,2 M CALCIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.02850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.50100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.58400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.50100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.02850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.58400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -58.05700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ARG A 15 NE CZ NH1 NH2 REMARK 470 LYS A 76 CE NZ REMARK 470 ASP B 2 CG OD1 OD2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 GLN B 5 CG CD OE1 NE2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 ASP B 62 OD1 OD2 REMARK 470 LYS C 4 CG CD CE NZ REMARK 470 GLN C 5 CG CD OE1 NE2 REMARK 470 LYS C 8 CD CE NZ REMARK 470 ARG C 15 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 29 CG CD OE1 OE2 REMARK 470 ARG C 60 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 62 CG OD1 OD2 REMARK 470 ARG C 68 NE CZ NH1 NH2 REMARK 470 LYS C 76 NZ REMARK 470 ARG C 123 NE CZ NH1 NH2 REMARK 470 ARG C 152 CG CD NE CZ NH1 NH2 REMARK 470 ASP D 2 CG OD1 OD2 REMARK 470 GLN D 3 CG CD OE1 NE2 REMARK 470 LYS D 4 CG CD CE NZ REMARK 470 GLN D 5 CG CD OE1 NE2 REMARK 470 GLU D 7 CG CD OE1 OE2 REMARK 470 ARG D 15 NE CZ NH1 NH2 REMARK 470 ASP D 62 CG OD1 OD2 REMARK 470 LYS D 76 CD CE NZ REMARK 470 ARG D 86 CD NE CZ NH1 NH2 REMARK 470 ARG D 152 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 127 51.75 -115.66 REMARK 500 ALA B 110 72.02 -159.45 REMARK 500 ARG C 60 53.11 -116.19 REMARK 500 ASP C 62 52.53 -92.92 REMARK 500 ALA D 110 85.24 -158.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 445 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 73 OD1 REMARK 620 2 ASP B 73 OD2 50.5 REMARK 620 3 GLU B 77 OE2 90.1 79.7 REMARK 620 4 HOH B 417 O 87.0 103.4 172.9 REMARK 620 5 GLU C 77 OE1 65.1 114.1 89.0 83.9 REMARK 620 6 HOH C 318 O 138.7 167.9 91.5 86.4 73.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 76 O REMARK 620 2 ASP B 109 O 99.2 REMARK 620 3 HOH B 352 O 160.3 98.6 REMARK 620 4 LYS C 76 O 91.9 112.6 73.4 REMARK 620 5 ASP C 109 O 95.0 103.5 89.0 141.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 120 O REMARK 620 2 SER B 124 OG 124.1 REMARK 620 3 GLU B 128 OE2 113.3 106.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HIA RELATED DB: PDB REMARK 900 RELATED ID: 7OBZ RELATED DB: PDB REMARK 900 7OBZ DESCRIBES THE STRUCTURE OF THE RSLOV D109G VARIANT DBREF 7OB0 A 1 176 UNP M1E1F8 M1E1F8_RHOS5 1 176 DBREF 7OB0 B 1 176 UNP M1E1F8 M1E1F8_RHOS5 1 176 DBREF 7OB0 C 1 176 UNP M1E1F8 M1E1F8_RHOS5 1 176 DBREF 7OB0 D 1 176 UNP M1E1F8 M1E1F8_RHOS5 1 176 SEQADV 7OB0 LEU A 32 UNP M1E1F8 VAL 32 VARIANT SEQADV 7OB0 ASP A 48 UNP M1E1F8 GLY 48 ENGINEERED MUTATION SEQADV 7OB0 GLU A 49 UNP M1E1F8 GLN 49 ENGINEERED MUTATION SEQADV 7OB0 GLU A 77 UNP M1E1F8 LEU 77 ENGINEERED MUTATION SEQADV 7OB0 LYS A 90 UNP M1E1F8 ALA 90 ENGINEERED MUTATION SEQADV 7OB0 GLY A 92 UNP M1E1F8 ASP 92 ENGINEERED MUTATION SEQADV 7OB0 GLN A 157 UNP M1E1F8 SER 157 ENGINEERED MUTATION SEQADV 7OB0 LEU B 32 UNP M1E1F8 VAL 32 VARIANT SEQADV 7OB0 ASP B 48 UNP M1E1F8 GLY 48 ENGINEERED MUTATION SEQADV 7OB0 GLU B 49 UNP M1E1F8 GLN 49 ENGINEERED MUTATION SEQADV 7OB0 GLU B 77 UNP M1E1F8 LEU 77 ENGINEERED MUTATION SEQADV 7OB0 LYS B 90 UNP M1E1F8 ALA 90 ENGINEERED MUTATION SEQADV 7OB0 GLY B 92 UNP M1E1F8 ASP 92 ENGINEERED MUTATION SEQADV 7OB0 GLN B 157 UNP M1E1F8 SER 157 ENGINEERED MUTATION SEQADV 7OB0 LEU C 32 UNP M1E1F8 VAL 32 VARIANT SEQADV 7OB0 ASP C 48 UNP M1E1F8 GLY 48 ENGINEERED MUTATION SEQADV 7OB0 GLU C 49 UNP M1E1F8 GLN 49 ENGINEERED MUTATION SEQADV 7OB0 GLU C 77 UNP M1E1F8 LEU 77 ENGINEERED MUTATION SEQADV 7OB0 LYS C 90 UNP M1E1F8 ALA 90 ENGINEERED MUTATION SEQADV 7OB0 GLY C 92 UNP M1E1F8 ASP 92 ENGINEERED MUTATION SEQADV 7OB0 GLN C 157 UNP M1E1F8 SER 157 ENGINEERED MUTATION SEQADV 7OB0 LEU D 32 UNP M1E1F8 VAL 32 VARIANT SEQADV 7OB0 ASP D 48 UNP M1E1F8 GLY 48 ENGINEERED MUTATION SEQADV 7OB0 GLU D 49 UNP M1E1F8 GLN 49 ENGINEERED MUTATION SEQADV 7OB0 GLU D 77 UNP M1E1F8 LEU 77 ENGINEERED MUTATION SEQADV 7OB0 LYS D 90 UNP M1E1F8 ALA 90 ENGINEERED MUTATION SEQADV 7OB0 GLY D 92 UNP M1E1F8 ASP 92 ENGINEERED MUTATION SEQADV 7OB0 GLN D 157 UNP M1E1F8 SER 157 ENGINEERED MUTATION SEQRES 1 A 176 MET ASP GLN LYS GLN PHE GLU LYS ILE ARG ALA VAL PHE SEQRES 2 A 176 ASP ARG SER GLY VAL ALA LEU THR LEU VAL ASP MET SER SEQRES 3 A 176 LEU PRO GLU GLN PRO LEU VAL LEU ALA ASN PRO PRO PHE SEQRES 4 A 176 LEU ARG MET THR GLY TYR THR GLU ASP GLU ILE LEU GLY SEQRES 5 A 176 PHE ASN CYS ARG PHE LEU GLN ARG GLY ASP GLU ASN ALA SEQRES 6 A 176 GLN ALA ARG ALA ASP ILE ARG ASP ALA LEU LYS GLU GLY SEQRES 7 A 176 ARG GLU LEU GLN VAL VAL LEU ARG ASN TYR ARG LYS ASN SEQRES 8 A 176 GLY GLU PRO PHE ASP ASN LEU LEU PHE LEU HIS PRO VAL SEQRES 9 A 176 GLY GLY ARG PRO ASP ALA PRO ASP TYR PHE LEU GLY SER SEQRES 10 A 176 GLN PHE GLU LEU GLY ARG SER GLY ASN SER GLU GLU ALA SEQRES 11 A 176 ALA ALA ALA GLY HIS ALA GLY ALA LEU THR GLY GLU LEU SEQRES 12 A 176 ALA ARG ILE GLY THR VAL ALA ALA ARG LEU GLU MET ASP SEQRES 13 A 176 GLN ARG ARG HIS LEU ALA GLN ALA ALA ALA ALA LEU VAL SEQRES 14 A 176 ARG ALA TRP GLU ARG ARG GLY SEQRES 1 B 176 MET ASP GLN LYS GLN PHE GLU LYS ILE ARG ALA VAL PHE SEQRES 2 B 176 ASP ARG SER GLY VAL ALA LEU THR LEU VAL ASP MET SER SEQRES 3 B 176 LEU PRO GLU GLN PRO LEU VAL LEU ALA ASN PRO PRO PHE SEQRES 4 B 176 LEU ARG MET THR GLY TYR THR GLU ASP GLU ILE LEU GLY SEQRES 5 B 176 PHE ASN CYS ARG PHE LEU GLN ARG GLY ASP GLU ASN ALA SEQRES 6 B 176 GLN ALA ARG ALA ASP ILE ARG ASP ALA LEU LYS GLU GLY SEQRES 7 B 176 ARG GLU LEU GLN VAL VAL LEU ARG ASN TYR ARG LYS ASN SEQRES 8 B 176 GLY GLU PRO PHE ASP ASN LEU LEU PHE LEU HIS PRO VAL SEQRES 9 B 176 GLY GLY ARG PRO ASP ALA PRO ASP TYR PHE LEU GLY SER SEQRES 10 B 176 GLN PHE GLU LEU GLY ARG SER GLY ASN SER GLU GLU ALA SEQRES 11 B 176 ALA ALA ALA GLY HIS ALA GLY ALA LEU THR GLY GLU LEU SEQRES 12 B 176 ALA ARG ILE GLY THR VAL ALA ALA ARG LEU GLU MET ASP SEQRES 13 B 176 GLN ARG ARG HIS LEU ALA GLN ALA ALA ALA ALA LEU VAL SEQRES 14 B 176 ARG ALA TRP GLU ARG ARG GLY SEQRES 1 C 176 MET ASP GLN LYS GLN PHE GLU LYS ILE ARG ALA VAL PHE SEQRES 2 C 176 ASP ARG SER GLY VAL ALA LEU THR LEU VAL ASP MET SER SEQRES 3 C 176 LEU PRO GLU GLN PRO LEU VAL LEU ALA ASN PRO PRO PHE SEQRES 4 C 176 LEU ARG MET THR GLY TYR THR GLU ASP GLU ILE LEU GLY SEQRES 5 C 176 PHE ASN CYS ARG PHE LEU GLN ARG GLY ASP GLU ASN ALA SEQRES 6 C 176 GLN ALA ARG ALA ASP ILE ARG ASP ALA LEU LYS GLU GLY SEQRES 7 C 176 ARG GLU LEU GLN VAL VAL LEU ARG ASN TYR ARG LYS ASN SEQRES 8 C 176 GLY GLU PRO PHE ASP ASN LEU LEU PHE LEU HIS PRO VAL SEQRES 9 C 176 GLY GLY ARG PRO ASP ALA PRO ASP TYR PHE LEU GLY SER SEQRES 10 C 176 GLN PHE GLU LEU GLY ARG SER GLY ASN SER GLU GLU ALA SEQRES 11 C 176 ALA ALA ALA GLY HIS ALA GLY ALA LEU THR GLY GLU LEU SEQRES 12 C 176 ALA ARG ILE GLY THR VAL ALA ALA ARG LEU GLU MET ASP SEQRES 13 C 176 GLN ARG ARG HIS LEU ALA GLN ALA ALA ALA ALA LEU VAL SEQRES 14 C 176 ARG ALA TRP GLU ARG ARG GLY SEQRES 1 D 176 MET ASP GLN LYS GLN PHE GLU LYS ILE ARG ALA VAL PHE SEQRES 2 D 176 ASP ARG SER GLY VAL ALA LEU THR LEU VAL ASP MET SER SEQRES 3 D 176 LEU PRO GLU GLN PRO LEU VAL LEU ALA ASN PRO PRO PHE SEQRES 4 D 176 LEU ARG MET THR GLY TYR THR GLU ASP GLU ILE LEU GLY SEQRES 5 D 176 PHE ASN CYS ARG PHE LEU GLN ARG GLY ASP GLU ASN ALA SEQRES 6 D 176 GLN ALA ARG ALA ASP ILE ARG ASP ALA LEU LYS GLU GLY SEQRES 7 D 176 ARG GLU LEU GLN VAL VAL LEU ARG ASN TYR ARG LYS ASN SEQRES 8 D 176 GLY GLU PRO PHE ASP ASN LEU LEU PHE LEU HIS PRO VAL SEQRES 9 D 176 GLY GLY ARG PRO ASP ALA PRO ASP TYR PHE LEU GLY SER SEQRES 10 D 176 GLN PHE GLU LEU GLY ARG SER GLY ASN SER GLU GLU ALA SEQRES 11 D 176 ALA ALA ALA GLY HIS ALA GLY ALA LEU THR GLY GLU LEU SEQRES 12 D 176 ALA ARG ILE GLY THR VAL ALA ALA ARG LEU GLU MET ASP SEQRES 13 D 176 GLN ARG ARG HIS LEU ALA GLN ALA ALA ALA ALA LEU VAL SEQRES 14 D 176 ARG ALA TRP GLU ARG ARG GLY HET CA A 201 1 HET FMN A 202 31 HET ACT A 203 4 HET MG B 201 1 HET CA B 202 1 HET NA B 203 1 HET FMN B 204 31 HET ACT B 205 4 HET FMN C 201 31 HET ACT C 202 4 HET FMN D 201 31 HETNAM CA CALCIUM ION HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 5 CA 2(CA 2+) FORMUL 6 FMN 4(C17 H21 N4 O9 P) FORMUL 7 ACT 3(C2 H3 O2 1-) FORMUL 8 MG MG 2+ FORMUL 10 NA NA 1+ FORMUL 16 HOH *543(H2 O) HELIX 1 AA1 ASP A 2 SER A 16 1 15 HELIX 2 AA2 ASN A 36 GLY A 44 1 9 HELIX 3 AA3 THR A 46 LEU A 51 1 6 HELIX 4 AA4 ASN A 54 GLN A 59 5 6 HELIX 5 AA5 ASN A 64 GLY A 78 1 15 HELIX 6 AA6 SER A 127 GLY A 147 1 21 HELIX 7 AA7 ALA A 150 ARG A 152 5 3 HELIX 8 AA8 LEU A 153 ARG A 174 1 22 HELIX 9 AA9 ASP B 2 SER B 16 1 15 HELIX 10 AB1 ASN B 36 GLY B 44 1 9 HELIX 11 AB2 THR B 46 LEU B 51 1 6 HELIX 12 AB3 ASN B 54 GLN B 59 5 6 HELIX 13 AB4 ASN B 64 GLY B 78 1 15 HELIX 14 AB5 SER B 124 ASN B 126 5 3 HELIX 15 AB6 SER B 127 ILE B 146 1 20 HELIX 16 AB7 ALA B 150 ARG B 152 5 3 HELIX 17 AB8 LEU B 153 ARG B 175 1 23 HELIX 18 AB9 ASP C 2 SER C 16 1 15 HELIX 19 AC1 ASN C 36 GLY C 44 1 9 HELIX 20 AC2 THR C 46 LEU C 51 1 6 HELIX 21 AC3 ASN C 54 GLN C 59 5 6 HELIX 22 AC4 ASN C 64 GLY C 78 1 15 HELIX 23 AC5 SER C 127 ILE C 146 1 20 HELIX 24 AC6 ALA C 150 ARG C 152 5 3 HELIX 25 AC7 LEU C 153 ARG C 174 1 22 HELIX 26 AC8 ASP D 2 SER D 16 1 15 HELIX 27 AC9 ASN D 36 GLY D 44 1 9 HELIX 28 AD1 THR D 46 LEU D 51 1 6 HELIX 29 AD2 ASN D 54 GLN D 59 5 6 HELIX 30 AD3 ASN D 64 GLY D 78 1 15 HELIX 31 AD4 SER D 127 GLY D 147 1 21 HELIX 32 AD5 ALA D 150 ARG D 152 5 3 HELIX 33 AD6 LEU D 153 GLY D 176 1 24 SHEET 1 AA1 5 LEU A 32 ALA A 35 0 SHEET 2 AA1 5 THR A 21 ASP A 24 -1 N LEU A 22 O VAL A 33 SHEET 3 AA1 5 TYR A 113 GLU A 120 -1 O PHE A 114 N VAL A 23 SHEET 4 AA1 5 PRO A 94 VAL A 104 -1 N HIS A 102 O LEU A 115 SHEET 5 AA1 5 LEU A 81 TYR A 88 -1 N LEU A 81 O LEU A 101 SHEET 1 AA2 5 LEU B 32 ALA B 35 0 SHEET 2 AA2 5 THR B 21 ASP B 24 -1 N LEU B 22 O VAL B 33 SHEET 3 AA2 5 TYR B 113 GLU B 120 -1 O PHE B 114 N VAL B 23 SHEET 4 AA2 5 PRO B 94 VAL B 104 -1 N HIS B 102 O LEU B 115 SHEET 5 AA2 5 LEU B 81 TYR B 88 -1 N LEU B 81 O LEU B 101 SHEET 1 AA3 5 LEU C 32 ALA C 35 0 SHEET 2 AA3 5 THR C 21 ASP C 24 -1 N LEU C 22 O VAL C 33 SHEET 3 AA3 5 TYR C 113 GLU C 120 -1 O GLY C 116 N THR C 21 SHEET 4 AA3 5 PRO C 94 VAL C 104 -1 N HIS C 102 O LEU C 115 SHEET 5 AA3 5 LEU C 81 TYR C 88 -1 N ASN C 87 O PHE C 95 SHEET 1 AA4 5 LEU D 32 ALA D 35 0 SHEET 2 AA4 5 THR D 21 ASP D 24 -1 N LEU D 22 O VAL D 33 SHEET 3 AA4 5 TYR D 113 GLU D 120 -1 O GLY D 116 N THR D 21 SHEET 4 AA4 5 PRO D 94 VAL D 104 -1 N HIS D 102 O LEU D 115 SHEET 5 AA4 5 LEU D 81 TYR D 88 -1 N LEU D 81 O LEU D 101 LINK O VAL A 12 CA CA A 201 1555 1555 2.74 LINK OD1 ASP B 73 CA CA B 202 1555 1555 2.73 LINK OD2 ASP B 73 CA CA B 202 1555 1555 2.40 LINK O LYS B 76 MG MG B 201 1555 1555 2.27 LINK OE2 GLU B 77 CA CA B 202 1555 1555 2.26 LINK O ASP B 109 MG MG B 201 1555 1555 2.30 LINK O GLU B 120 NA NA B 203 1555 1555 2.69 LINK OG SER B 124 NA NA B 203 1555 1555 2.82 LINK OE2 GLU B 128 NA NA B 203 1555 1555 2.27 LINK MG MG B 201 O HOH B 352 1555 1555 2.62 LINK MG MG B 201 O LYS C 76 1555 1555 2.45 LINK MG MG B 201 O ASP C 109 1555 1555 2.39 LINK CA CA B 202 O HOH B 417 1555 1555 2.34 LINK CA CA B 202 OE1 GLU C 77 1555 1555 3.14 LINK CA CA B 202 O HOH C 318 1555 1555 2.66 CRYST1 58.057 77.168 155.002 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017224 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006452 0.00000