HEADER HYDROLASE 21-APR-21 7OB6 TITLE CPR-C4 - A CONSERVED NOVEL PROTEASE FROM THE CANDIDATE PHYLA RADIATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CPR-C4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDATE DIVISION CPR1; SOURCE 3 ORGANISM_TAXID: 1618338; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE, CYSTEINE PROTEASE, ZN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.A.S.CORNISH,E.POHL REVDAT 3 19-JUN-24 7OB6 1 REMARK REVDAT 2 25-MAY-22 7OB6 1 JRNL REVDAT 1 27-APR-22 7OB6 0 JRNL AUTH K.A.S.CORNISH,J.LANGE,A.AEVARSSON,E.POHL JRNL TITL CPR-C4 IS A HIGHLY CONSERVED NOVEL PROTEASE FROM THE JRNL TITL 2 CANDIDATE PHYLA RADIATION WITH REMOTE STRUCTURAL HOMOLOGY TO JRNL TITL 3 HUMAN VASOHIBINS. JRNL REF J.BIOL.CHEM. V. 298 01919 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35405098 JRNL DOI 10.1016/J.JBC.2022.101919 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26479 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.959 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1821 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.4530 REMARK 3 BIN FREE R VALUE SET COUNT : 108 REMARK 3 BIN FREE R VALUE : 0.4650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 102.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.42000 REMARK 3 B22 (A**2) : 3.42000 REMARK 3 B33 (A**2) : -11.09300 REMARK 3 B12 (A**2) : 1.71000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.337 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.332 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.956 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3445 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4705 ; 1.418 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 7.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;35.248 ;21.905 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;14.228 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.393 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 466 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2659 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1433 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2321 ; 0.295 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 89 ; 0.110 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.084 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.172 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1736 ; 8.964 ;10.958 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2163 ;12.646 ;16.408 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1709 ;10.567 ;10.851 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2542 ;14.194 ;16.223 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 214 NULL REMARK 3 2 B 0 B 214 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 7OB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-21. REMARK 100 THE DEPOSITION ID IS D_1292115395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763, 1.2824 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26494 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.598 REMARK 200 RESOLUTION RANGE LOW (A) : 48.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 48.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.01800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS SCREEN (MOLECULAR REMARK 280 DIMENSIONS), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.35333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.17667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.17667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.35333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 317 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 318 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A -11 REMARK 465 MET A -10 REMARK 465 ILE A -9 REMARK 465 GLU A 42 REMARK 465 GLY A 43 REMARK 465 LYS A 216 REMARK 465 ARG A 217 REMARK 465 LYS A 218 REMARK 465 THR A 219 REMARK 465 ASN A 220 REMARK 465 SER A 221 REMARK 465 THR B -11 REMARK 465 MET B -10 REMARK 465 ILE B -9 REMARK 465 THR B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 41 REMARK 465 GLU B 42 REMARK 465 GLY B 43 REMARK 465 LYS B 216 REMARK 465 ARG B 217 REMARK 465 LYS B 218 REMARK 465 THR B 219 REMARK 465 ASN B 220 REMARK 465 SER B 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LEU A 40 CG CD1 CD2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 HIS A 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 163 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 SER B 0 OG REMARK 470 MET B 1 CG SD CE REMARK 470 HIS B 2 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 3 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 GLN B 6 CG CD OE1 NE2 REMARK 470 LEU B 7 CG CD1 CD2 REMARK 470 GLN B 8 CG CD OE1 NE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 LEU B 10 CG CD1 CD2 REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 LYS B 17 CG CD CE NZ REMARK 470 LEU B 19 CG CD1 CD2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LEU B 40 CG CD1 CD2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 51 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 MET B 66 CG SD CE REMARK 470 LEU B 70 CG CD1 CD2 REMARK 470 LEU B 72 CG CD1 CD2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 LEU B 115 CG CD1 CD2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 163 CG CD CE NZ REMARK 470 GLU B 165 CG CD OE1 OE2 REMARK 470 ILE B 169 CG1 CG2 CD1 REMARK 470 LEU B 174 CG CD1 CD2 REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 GLU B 179 CG CD OE1 OE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 LYS B 196 CG CD CE NZ REMARK 470 ARG B 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 GLU B 213 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 311 O HOH B 311 5555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 151 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 151 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -4 78.32 -103.30 REMARK 500 ASP A 39 -62.00 -152.01 REMARK 500 LEU A 40 65.04 74.35 REMARK 500 PRO A 113 28.41 -79.15 REMARK 500 TRP A 167 -38.13 -136.37 REMARK 500 LEU A 174 30.11 -94.78 REMARK 500 ASP B 39 65.43 -159.68 REMARK 500 MET B 47 68.67 -155.88 REMARK 500 PRO B 113 26.30 -78.92 REMARK 500 ARG B 151 -30.82 -130.60 REMARK 500 TRP B 167 -37.91 -133.67 REMARK 500 LEU B 174 30.29 -94.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A -7 NE2 REMARK 620 2 HIS A -5 NE2 133.7 REMARK 620 3 HIS A 75 ND1 123.4 86.8 REMARK 620 4 GLU A 179 OE1 122.5 68.0 27.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD1 REMARK 620 2 ASP A 83 OD2 53.9 REMARK 620 3 ASP A 92 OD2 112.0 85.3 REMARK 620 4 ASP A 182 OD1 128.7 85.7 91.9 REMARK 620 N 1 2 3 DBREF 7OB6 A -11 221 PDB 7OB6 7OB6 -11 221 DBREF 7OB6 B -11 221 PDB 7OB6 7OB6 -11 221 SEQRES 1 A 233 THR MET ILE THR HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 233 HIS TYR LYS ALA GLN LEU GLN LYS LEU LEU THR THR GLU SEQRES 3 A 233 GLU LYS LYS ILE LEU ALA ARG LEU SER THR PRO GLN LYS SEQRES 4 A 233 ILE GLN ASP PHE LEU ASP THR ILE LYS ASN LYS ASP LEU SEQRES 5 A 233 ALA GLU GLY GLU HIS THR MET TRP SER PRO ARG ALA VAL SEQRES 6 A 233 LEU LYS HIS LYS HIS ALA HIS CYS MET GLU GLY ALA MET SEQRES 7 A 233 LEU ALA ALA LEU ALA LEU ALA TYR HIS GLY HIS SER PRO SEQRES 8 A 233 LEU LEU MET ASP LEU GLN THR THR ASP GLU ASP GLU ASP SEQRES 9 A 233 HIS VAL VAL ALA LEU PHE LYS ILE ASP GLY HIS TRP GLY SEQRES 10 A 233 ALA ILE SER LYS THR ASN HIS PRO VAL LEU ARG TYR ARG SEQRES 11 A 233 ASP PRO ILE TYR LYS SER VAL ARG GLU LEU ALA MET SER SEQRES 12 A 233 TYR PHE HIS GLU TYR PHE ILE TRP TRP THR LYS LYS ASN SEQRES 13 A 233 GLY GLY LYS LYS THR LEU ARG ALA TYR SER ASN PRO PHE SEQRES 14 A 233 ASP LEU THR ARG TYR LYS PRO GLU ARG TRP VAL ILE ALA SEQRES 15 A 233 THR GLY ASP LEU ASP TRP LEU ALA GLU ALA LEU ASP ASP SEQRES 16 A 233 SER LYS HIS PHE PRO ILE LEU ASN LYS LYS MET GLN LYS SEQRES 17 A 233 GLN LEU ARG PRO ALA SER ARG ILE GLU THR LYS ALA ALA SEQRES 18 A 233 SER LEU SER GLU TRP PRO LYS ARG LYS THR ASN SER SEQRES 1 B 233 THR MET ILE THR HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 233 HIS TYR LYS ALA GLN LEU GLN LYS LEU LEU THR THR GLU SEQRES 3 B 233 GLU LYS LYS ILE LEU ALA ARG LEU SER THR PRO GLN LYS SEQRES 4 B 233 ILE GLN ASP PHE LEU ASP THR ILE LYS ASN LYS ASP LEU SEQRES 5 B 233 ALA GLU GLY GLU HIS THR MET TRP SER PRO ARG ALA VAL SEQRES 6 B 233 LEU LYS HIS LYS HIS ALA HIS CYS MET GLU GLY ALA MET SEQRES 7 B 233 LEU ALA ALA LEU ALA LEU ALA TYR HIS GLY HIS SER PRO SEQRES 8 B 233 LEU LEU MET ASP LEU GLN THR THR ASP GLU ASP GLU ASP SEQRES 9 B 233 HIS VAL VAL ALA LEU PHE LYS ILE ASP GLY HIS TRP GLY SEQRES 10 B 233 ALA ILE SER LYS THR ASN HIS PRO VAL LEU ARG TYR ARG SEQRES 11 B 233 ASP PRO ILE TYR LYS SER VAL ARG GLU LEU ALA MET SER SEQRES 12 B 233 TYR PHE HIS GLU TYR PHE ILE TRP TRP THR LYS LYS ASN SEQRES 13 B 233 GLY GLY LYS LYS THR LEU ARG ALA TYR SER ASN PRO PHE SEQRES 14 B 233 ASP LEU THR ARG TYR LYS PRO GLU ARG TRP VAL ILE ALA SEQRES 15 B 233 THR GLY ASP LEU ASP TRP LEU ALA GLU ALA LEU ASP ASP SEQRES 16 B 233 SER LYS HIS PHE PRO ILE LEU ASN LYS LYS MET GLN LYS SEQRES 17 B 233 GLN LEU ARG PRO ALA SER ARG ILE GLU THR LYS ALA ALA SEQRES 18 B 233 SER LEU SER GLU TRP PRO LYS ARG LYS THR ASN SER HET ZN A 301 1 HET ZN A 302 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *63(H2 O) HELIX 1 AA1 SER A 0 LEU A 11 1 12 HELIX 2 AA2 THR A 12 LEU A 22 1 11 HELIX 3 AA3 THR A 24 THR A 34 1 11 HELIX 4 AA4 SER A 49 LYS A 57 1 9 HELIX 5 AA5 HIS A 60 HIS A 75 1 16 HELIX 6 AA6 SER A 124 SER A 131 1 8 HELIX 7 AA7 TYR A 132 TYR A 136 5 5 HELIX 8 AA8 THR A 160 LYS A 163 5 4 HELIX 9 AA9 PRO A 164 ILE A 169 1 6 HELIX 10 AB1 LEU A 174 SER A 184 1 11 HELIX 11 AB2 ASN A 191 LEU A 198 1 8 HELIX 12 AB3 SER A 202 LEU A 211 1 10 HELIX 13 AB4 MET B 1 LEU B 11 1 11 HELIX 14 AB5 THR B 12 LEU B 22 1 11 HELIX 15 AB6 THR B 24 THR B 34 1 11 HELIX 16 AB7 SER B 49 LYS B 57 1 9 HELIX 17 AB8 HIS B 60 HIS B 75 1 16 HELIX 18 AB9 SER B 124 SER B 131 1 8 HELIX 19 AC1 TYR B 132 TYR B 136 5 5 HELIX 20 AC2 THR B 160 LYS B 163 5 4 HELIX 21 AC3 PRO B 164 ILE B 169 1 6 HELIX 22 AC4 LEU B 174 SER B 184 1 11 HELIX 23 AC5 ASN B 191 LEU B 198 1 8 HELIX 24 AC6 SER B 202 LEU B 211 1 10 SHEET 1 AA1 2 LYS A 36 ASN A 37 0 SHEET 2 AA1 2 HIS A 58 ALA A 59 1 O ALA A 59 N LYS A 36 SHEET 1 AA2 5 ARG A 118 TYR A 122 0 SHEET 2 AA2 5 HIS A 103 ILE A 107 -1 N TRP A 104 O TYR A 122 SHEET 3 AA2 5 HIS A 93 ILE A 100 -1 N PHE A 98 O GLY A 105 SHEET 4 AA2 5 LEU A 80 THR A 86 -1 N LEU A 84 O HIS A 93 SHEET 5 AA2 5 PHE A 157 ASP A 158 -1 O PHE A 157 N LEU A 81 SHEET 1 AA3 6 ARG A 118 TYR A 122 0 SHEET 2 AA3 6 HIS A 103 ILE A 107 -1 N TRP A 104 O TYR A 122 SHEET 3 AA3 6 HIS A 93 ILE A 100 -1 N PHE A 98 O GLY A 105 SHEET 4 AA3 6 LEU A 80 THR A 86 -1 N LEU A 84 O HIS A 93 SHEET 5 AA3 6 LEU A 150 SER A 154 -1 O ALA A 152 N GLN A 85 SHEET 6 AA3 6 HIS A 186 PRO A 188 -1 O PHE A 187 N TYR A 153 SHEET 1 AA4 2 LYS B 36 ASN B 37 0 SHEET 2 AA4 2 HIS B 58 ALA B 59 1 O ALA B 59 N LYS B 36 SHEET 1 AA5 5 ARG B 118 TYR B 122 0 SHEET 2 AA5 5 HIS B 103 ILE B 107 -1 N TRP B 104 O TYR B 122 SHEET 3 AA5 5 HIS B 93 ILE B 100 -1 N PHE B 98 O GLY B 105 SHEET 4 AA5 5 LEU B 80 THR B 86 -1 N LEU B 84 O HIS B 93 SHEET 5 AA5 5 PHE B 157 ASP B 158 -1 O PHE B 157 N LEU B 81 SHEET 1 AA6 6 ARG B 118 TYR B 122 0 SHEET 2 AA6 6 HIS B 103 ILE B 107 -1 N TRP B 104 O TYR B 122 SHEET 3 AA6 6 HIS B 93 ILE B 100 -1 N PHE B 98 O GLY B 105 SHEET 4 AA6 6 LEU B 80 THR B 86 -1 N LEU B 84 O HIS B 93 SHEET 5 AA6 6 LEU B 150 SER B 154 -1 O ALA B 152 N GLN B 85 SHEET 6 AA6 6 HIS B 186 PRO B 188 -1 O PHE B 187 N TYR B 153 LINK NE2 HIS A -7 ZN ZN A 301 1555 1555 2.35 LINK NE2 HIS A -5 ZN ZN A 301 1555 1555 1.95 LINK ND1 HIS A 75 ZN ZN A 301 1555 1555 2.05 LINK OD1 ASP A 83 ZN ZN A 302 1555 1555 2.17 LINK OD2 ASP A 83 ZN ZN A 302 1555 1555 2.67 LINK OD2 ASP A 92 ZN ZN A 302 1555 1555 2.44 LINK OE1 GLU A 179 ZN ZN A 301 1555 2564 1.85 LINK OD1 ASP A 182 ZN ZN A 302 1555 1555 1.93 CRYST1 123.392 123.392 96.530 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008104 0.004679 0.000000 0.00000 SCALE2 0.000000 0.009358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010359 0.00000