HEADER ENDOCYTOSIS 11-MAY-21 7OI5 TITLE CRYSTAL STRUCTURE OF AP2 MU2 - FCHO2 CHIMERA (GST CLEAVED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP-2 COMPLEX SUBUNIT MU,F-BAR DOMAIN ONLY PROTEIN 2; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: AP-2 MU CHAIN,ADAPTOR PROTEIN COMPLEX AP-2 SUBUNIT MU, COMPND 5 ADAPTOR-RELATED PROTEIN COMPLEX 2 SUBUNIT MU,CLATHRIN ASSEMBLY COMPND 6 PROTEIN COMPLEX 2 MU MEDIUM CHAIN,CLATHRIN COAT ASSEMBLY PROTEIN COMPND 7 AP50,CLATHRIN COAT-ASSOCIATED PROTEIN AP50,MU2-ADAPTIN,PLASMA COMPND 8 MEMBRANE ADAPTOR AP-2 50 KDA PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: RAT, HUMAN; SOURCE 4 ORGANISM_TAXID: 10116, 9606; SOURCE 5 GENE: AP2M1, FCHO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS CLATHRIN-MEDIATED ENDOCYTOSIS (CME), PROTEIN RECYCLING, PLASMA KEYWDS 2 MEMBRANE, ENDOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR N.R.ZACCAI,B.T.KELLY,P.R.EVANS,D.J.OWEN REVDAT 1 01-JUN-22 7OI5 0 JRNL AUTH N.R.ZACCAI,Z.KADLECOVA,V.K.DICKSON,K.KOROBCHEVSKAYA, JRNL AUTH 2 J.KAMENICKY,O.KOVTUN,P.K.UMASANKAR,A.G.WROBEL,J.G.G.KAUFMAN, JRNL AUTH 3 S.R.GRAY,K.QU,P.R.EVANS,M.FRITZSCHE,F.SROUBEK,S.HONING, JRNL AUTH 4 J.A.G.BRIGGS,B.T.KELLY,D.J.OWEN,L.M.TRAUB JRNL TITL FCHO CONTROLS AP2'S INITIATING ROLE IN ENDOCYTOSIS THROUGH A JRNL TITL 2 PTDINS(4,5)P 2 -DEPENDENT SWITCH. JRNL REF SCI ADV V. 8 N2018 2022 JRNL REFN ESSN 2375-2548 JRNL PMID 35486718 JRNL DOI 10.1126/SCIADV.ABN2018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 22505256 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29463 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3949 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3972 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4635 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.402 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91589 REMARK 200 MONOCHROMATOR : 0.91589 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.610 REMARK 200 RESOLUTION RANGE LOW (A) : 79.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PHASER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V PEG 3350, 0.2 M SODIUM REMARK 280 PHOSPHATE DIBASIC DEHYDRATE PH 9.1. THE CRYSTAL WAS CRYO- REMARK 280 PROTECTED BY SOAKING IN MOTHER LIQUOR SUPPLEMENTED WITH 25% REMARK 280 GLYCEROL., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.02300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.02300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 226 REMARK 465 LYS B 227 REMARK 465 GLY B 228 REMARK 465 THR B 229 REMARK 465 ALA B 230 REMARK 465 ASP B 231 REMARK 465 GLU B 232 REMARK 465 THR B 233 REMARK 465 SER B 234 REMARK 465 LYS B 235 REMARK 465 SER B 236 REMARK 465 GLY B 237 REMARK 465 LYS B 238 REMARK 465 GLY B 436 REMARK 465 ALA B 437 REMARK 465 SER B 438 REMARK 465 GLY B 439 REMARK 465 SER B 440 REMARK 465 ALA B 441 REMARK 465 GLY B 442 REMARK 465 SER B 443 REMARK 465 ALA B 444 REMARK 465 GLY B 445 REMARK 465 PRO B 446 REMARK 465 SER B 447 REMARK 465 GLY B 448 REMARK 465 ALA B 449 REMARK 465 GLY B 450 REMARK 465 SER B 451 REMARK 465 ALA B 452 REMARK 465 GLY B 453 REMARK 465 SER B 454 REMARK 465 ALA B 455 REMARK 465 GLY B 456 REMARK 465 PRO B 457 REMARK 465 SER B 458 REMARK 465 ALA B 459 REMARK 465 GLY B 460 REMARK 465 SER B 461 REMARK 465 ALA B 462 REMARK 465 GLY B 463 REMARK 465 SER B 464 REMARK 465 ALA B 465 REMARK 465 GLY B 466 REMARK 465 SER B 467 REMARK 465 GLY B 468 REMARK 465 SER B 469 REMARK 465 ALA B 470 REMARK 465 GLY B 471 REMARK 465 SER B 472 REMARK 465 ALA B 473 REMARK 465 PRO B 474 REMARK 465 GLY B 475 REMARK 465 PRO B 476 REMARK 465 THR B 489 REMARK 465 ASN B 490 REMARK 465 GLN B 491 REMARK 465 SER B 502 REMARK 465 SER B 503 REMARK 465 ASP B 504 REMARK 465 SER B 505 REMARK 465 ASP B 506 REMARK 465 SER B 507 REMARK 465 GLU B 508 REMARK 465 ASP B 509 REMARK 465 GLU B 510 REMARK 465 GLU B 511 REMARK 465 ILE D 220 REMARK 465 VAL D 221 REMARK 465 ILE D 222 REMARK 465 GLU D 223 REMARK 465 LYS D 224 REMARK 465 GLN D 225 REMARK 465 GLY D 226 REMARK 465 LYS D 227 REMARK 465 GLY D 228 REMARK 465 THR D 229 REMARK 465 ALA D 230 REMARK 465 ASP D 231 REMARK 465 GLU D 232 REMARK 465 THR D 233 REMARK 465 SER D 234 REMARK 465 LYS D 235 REMARK 465 SER D 236 REMARK 465 GLY D 237 REMARK 465 LYS D 238 REMARK 465 GLN D 239 REMARK 465 SER D 240 REMARK 465 GLY D 436 REMARK 465 ALA D 437 REMARK 465 SER D 438 REMARK 465 GLY D 439 REMARK 465 SER D 440 REMARK 465 ALA D 441 REMARK 465 GLY D 442 REMARK 465 SER D 443 REMARK 465 ALA D 444 REMARK 465 GLY D 445 REMARK 465 PRO D 446 REMARK 465 SER D 447 REMARK 465 GLY D 448 REMARK 465 ALA D 449 REMARK 465 GLY D 450 REMARK 465 SER D 451 REMARK 465 ALA D 452 REMARK 465 GLY D 453 REMARK 465 SER D 454 REMARK 465 ALA D 455 REMARK 465 GLY D 456 REMARK 465 PRO D 457 REMARK 465 SER D 458 REMARK 465 ALA D 459 REMARK 465 GLY D 460 REMARK 465 SER D 461 REMARK 465 ALA D 462 REMARK 465 GLY D 463 REMARK 465 SER D 464 REMARK 465 ALA D 465 REMARK 465 GLY D 466 REMARK 465 SER D 467 REMARK 465 GLY D 468 REMARK 465 SER D 469 REMARK 465 ALA D 470 REMARK 465 GLY D 471 REMARK 465 SER D 472 REMARK 465 ALA D 473 REMARK 465 PRO D 474 REMARK 465 GLY D 475 REMARK 465 PRO D 476 REMARK 465 ASP D 477 REMARK 465 ASN D 490 REMARK 465 GLN D 491 REMARK 465 ASN D 492 REMARK 465 ASP D 493 REMARK 465 THR D 494 REMARK 465 SER D 502 REMARK 465 SER D 503 REMARK 465 ASP D 504 REMARK 465 SER D 505 REMARK 465 ASP D 506 REMARK 465 SER D 507 REMARK 465 GLU D 508 REMARK 465 ASP D 509 REMARK 465 GLU D 510 REMARK 465 GLU D 511 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 193 127.69 179.77 REMARK 500 TYR B 205 60.49 -114.76 REMARK 500 MET B 209 76.28 -116.55 REMARK 500 ASP B 218 -121.22 -92.08 REMARK 500 ILE B 263 73.26 -103.59 REMARK 500 ALA B 350 143.90 -173.00 REMARK 500 SER B 364 137.05 -170.84 REMARK 500 LYS B 378 -6.52 75.50 REMARK 500 PRO B 393 42.64 -90.60 REMARK 500 ASP B 479 -166.88 -116.60 REMARK 500 GLU B 480 -53.96 -172.50 REMARK 500 GLU B 481 24.69 -144.28 REMARK 500 SER D 193 136.78 -172.86 REMARK 500 ALA D 194 137.64 -170.58 REMARK 500 TYR D 205 46.99 -106.62 REMARK 500 ASN D 217 59.87 -91.33 REMARK 500 ASN D 329 34.34 -90.13 REMARK 500 MET D 358 115.45 -166.65 REMARK 500 PRO D 393 43.45 -92.95 REMARK 500 ASN D 412 72.07 41.42 REMARK 500 GLU D 480 -83.95 -139.36 REMARK 500 TYR D 500 43.99 -96.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 253 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 601 DBREF 7OI5 B 158 435 UNP P84092 AP2M1_RAT 158 435 DBREF 7OI5 B 476 511 UNP Q0JRZ9 FCHO2_HUMAN 316 351 DBREF 7OI5 D 158 435 UNP P84092 AP2M1_RAT 158 435 DBREF 7OI5 D 476 511 UNP Q0JRZ9 FCHO2_HUMAN 316 351 SEQADV 7OI5 PRO B 153 UNP P84092 EXPRESSION TAG SEQADV 7OI5 GLY B 154 UNP P84092 EXPRESSION TAG SEQADV 7OI5 ILE B 155 UNP P84092 EXPRESSION TAG SEQADV 7OI5 HIS B 156 UNP P84092 EXPRESSION TAG SEQADV 7OI5 MET B 157 UNP P84092 EXPRESSION TAG SEQADV 7OI5 GLY B 436 UNP P84092 LINKER SEQADV 7OI5 ALA B 437 UNP P84092 LINKER SEQADV 7OI5 SER B 438 UNP P84092 LINKER SEQADV 7OI5 GLY B 439 UNP P84092 LINKER SEQADV 7OI5 SER B 440 UNP P84092 LINKER SEQADV 7OI5 ALA B 441 UNP P84092 LINKER SEQADV 7OI5 GLY B 442 UNP P84092 LINKER SEQADV 7OI5 SER B 443 UNP P84092 LINKER SEQADV 7OI5 ALA B 444 UNP P84092 LINKER SEQADV 7OI5 GLY B 445 UNP P84092 LINKER SEQADV 7OI5 PRO B 446 UNP P84092 LINKER SEQADV 7OI5 SER B 447 UNP P84092 LINKER SEQADV 7OI5 GLY B 448 UNP P84092 LINKER SEQADV 7OI5 ALA B 449 UNP P84092 LINKER SEQADV 7OI5 GLY B 450 UNP P84092 LINKER SEQADV 7OI5 SER B 451 UNP P84092 LINKER SEQADV 7OI5 ALA B 452 UNP P84092 LINKER SEQADV 7OI5 GLY B 453 UNP P84092 LINKER SEQADV 7OI5 SER B 454 UNP P84092 LINKER SEQADV 7OI5 ALA B 455 UNP P84092 LINKER SEQADV 7OI5 GLY B 456 UNP P84092 LINKER SEQADV 7OI5 PRO B 457 UNP P84092 LINKER SEQADV 7OI5 SER B 458 UNP P84092 LINKER SEQADV 7OI5 ALA B 459 UNP P84092 LINKER SEQADV 7OI5 GLY B 460 UNP P84092 LINKER SEQADV 7OI5 SER B 461 UNP P84092 LINKER SEQADV 7OI5 ALA B 462 UNP P84092 LINKER SEQADV 7OI5 GLY B 463 UNP P84092 LINKER SEQADV 7OI5 SER B 464 UNP P84092 LINKER SEQADV 7OI5 ALA B 465 UNP P84092 LINKER SEQADV 7OI5 GLY B 466 UNP P84092 LINKER SEQADV 7OI5 SER B 467 UNP P84092 LINKER SEQADV 7OI5 GLY B 468 UNP P84092 LINKER SEQADV 7OI5 SER B 469 UNP P84092 LINKER SEQADV 7OI5 ALA B 470 UNP P84092 LINKER SEQADV 7OI5 GLY B 471 UNP P84092 LINKER SEQADV 7OI5 SER B 472 UNP P84092 LINKER SEQADV 7OI5 ALA B 473 UNP P84092 LINKER SEQADV 7OI5 PRO B 474 UNP P84092 LINKER SEQADV 7OI5 GLY B 475 UNP P84092 LINKER SEQADV 7OI5 PRO D 153 UNP P84092 EXPRESSION TAG SEQADV 7OI5 GLY D 154 UNP P84092 EXPRESSION TAG SEQADV 7OI5 ILE D 155 UNP P84092 EXPRESSION TAG SEQADV 7OI5 HIS D 156 UNP P84092 EXPRESSION TAG SEQADV 7OI5 MET D 157 UNP P84092 EXPRESSION TAG SEQADV 7OI5 GLY D 436 UNP P84092 LINKER SEQADV 7OI5 ALA D 437 UNP P84092 LINKER SEQADV 7OI5 SER D 438 UNP P84092 LINKER SEQADV 7OI5 GLY D 439 UNP P84092 LINKER SEQADV 7OI5 SER D 440 UNP P84092 LINKER SEQADV 7OI5 ALA D 441 UNP P84092 LINKER SEQADV 7OI5 GLY D 442 UNP P84092 LINKER SEQADV 7OI5 SER D 443 UNP P84092 LINKER SEQADV 7OI5 ALA D 444 UNP P84092 LINKER SEQADV 7OI5 GLY D 445 UNP P84092 LINKER SEQADV 7OI5 PRO D 446 UNP P84092 LINKER SEQADV 7OI5 SER D 447 UNP P84092 LINKER SEQADV 7OI5 GLY D 448 UNP P84092 LINKER SEQADV 7OI5 ALA D 449 UNP P84092 LINKER SEQADV 7OI5 GLY D 450 UNP P84092 LINKER SEQADV 7OI5 SER D 451 UNP P84092 LINKER SEQADV 7OI5 ALA D 452 UNP P84092 LINKER SEQADV 7OI5 GLY D 453 UNP P84092 LINKER SEQADV 7OI5 SER D 454 UNP P84092 LINKER SEQADV 7OI5 ALA D 455 UNP P84092 LINKER SEQADV 7OI5 GLY D 456 UNP P84092 LINKER SEQADV 7OI5 PRO D 457 UNP P84092 LINKER SEQADV 7OI5 SER D 458 UNP P84092 LINKER SEQADV 7OI5 ALA D 459 UNP P84092 LINKER SEQADV 7OI5 GLY D 460 UNP P84092 LINKER SEQADV 7OI5 SER D 461 UNP P84092 LINKER SEQADV 7OI5 ALA D 462 UNP P84092 LINKER SEQADV 7OI5 GLY D 463 UNP P84092 LINKER SEQADV 7OI5 SER D 464 UNP P84092 LINKER SEQADV 7OI5 ALA D 465 UNP P84092 LINKER SEQADV 7OI5 GLY D 466 UNP P84092 LINKER SEQADV 7OI5 SER D 467 UNP P84092 LINKER SEQADV 7OI5 GLY D 468 UNP P84092 LINKER SEQADV 7OI5 SER D 469 UNP P84092 LINKER SEQADV 7OI5 ALA D 470 UNP P84092 LINKER SEQADV 7OI5 GLY D 471 UNP P84092 LINKER SEQADV 7OI5 SER D 472 UNP P84092 LINKER SEQADV 7OI5 ALA D 473 UNP P84092 LINKER SEQADV 7OI5 PRO D 474 UNP P84092 LINKER SEQADV 7OI5 GLY D 475 UNP P84092 LINKER SEQRES 1 B 359 PRO GLY ILE HIS MET GLN ILE GLY TRP ARG ARG GLU GLY SEQRES 2 B 359 ILE LYS TYR ARG ARG ASN GLU LEU PHE LEU ASP VAL LEU SEQRES 3 B 359 GLU SER VAL ASN LEU LEU MET SER PRO GLN GLY GLN VAL SEQRES 4 B 359 LEU SER ALA HIS VAL SER GLY ARG VAL VAL MET LYS SER SEQRES 5 B 359 TYR LEU SER GLY MET PRO GLU CYS LYS PHE GLY MET ASN SEQRES 6 B 359 ASP LYS ILE VAL ILE GLU LYS GLN GLY LYS GLY THR ALA SEQRES 7 B 359 ASP GLU THR SER LYS SER GLY LYS GLN SER ILE ALA ILE SEQRES 8 B 359 ASP ASP CYS THR PHE HIS GLN CYS VAL ARG LEU SER LYS SEQRES 9 B 359 PHE ASP SER GLU ARG SER ILE SER PHE ILE PRO PRO ASP SEQRES 10 B 359 GLY GLU PHE GLU LEU MET ARG TYR ARG THR THR LYS ASP SEQRES 11 B 359 ILE ILE LEU PRO PHE ARG VAL ILE PRO LEU VAL ARG GLU SEQRES 12 B 359 VAL GLY ARG THR LYS LEU GLU VAL LYS VAL VAL ILE LYS SEQRES 13 B 359 SER ASN PHE LYS PRO SER LEU LEU ALA GLN LYS ILE GLU SEQRES 14 B 359 VAL ARG ILE PRO THR PRO LEU ASN THR SER GLY VAL GLN SEQRES 15 B 359 VAL ILE CYS MET LYS GLY LYS ALA LYS TYR LYS ALA SER SEQRES 16 B 359 GLU ASN ALA ILE VAL TRP LYS ILE LYS ARG MET ALA GLY SEQRES 17 B 359 MET LYS GLU SER GLN ILE SER ALA GLU ILE GLU LEU LEU SEQRES 18 B 359 PRO THR ASN ASP LYS LYS LYS TRP ALA ARG PRO PRO ILE SEQRES 19 B 359 SER MET ASN PHE GLU VAL PRO PHE ALA PRO SER GLY LEU SEQRES 20 B 359 LYS VAL ARG TYR LEU LYS VAL PHE GLU PRO LYS LEU ASN SEQRES 21 B 359 TYR SER ASP HIS ASP VAL ILE LYS TRP VAL ARG TYR ILE SEQRES 22 B 359 GLY ARG SER GLY ILE TYR GLU THR ARG CYS GLY ALA SER SEQRES 23 B 359 GLY SER ALA GLY SER ALA GLY PRO SER GLY ALA GLY SER SEQRES 24 B 359 ALA GLY SER ALA GLY PRO SER ALA GLY SER ALA GLY SER SEQRES 25 B 359 ALA GLY SER GLY SER ALA GLY SER ALA PRO GLY PRO ASP SEQRES 26 B 359 VAL ASP GLU GLU GLY TYR SER ILE LYS PRO GLU THR ASN SEQRES 27 B 359 GLN ASN ASP THR LYS GLU ASN HIS PHE TYR SER SER SER SEQRES 28 B 359 ASP SER ASP SER GLU ASP GLU GLU SEQRES 1 D 359 PRO GLY ILE HIS MET GLN ILE GLY TRP ARG ARG GLU GLY SEQRES 2 D 359 ILE LYS TYR ARG ARG ASN GLU LEU PHE LEU ASP VAL LEU SEQRES 3 D 359 GLU SER VAL ASN LEU LEU MET SER PRO GLN GLY GLN VAL SEQRES 4 D 359 LEU SER ALA HIS VAL SER GLY ARG VAL VAL MET LYS SER SEQRES 5 D 359 TYR LEU SER GLY MET PRO GLU CYS LYS PHE GLY MET ASN SEQRES 6 D 359 ASP LYS ILE VAL ILE GLU LYS GLN GLY LYS GLY THR ALA SEQRES 7 D 359 ASP GLU THR SER LYS SER GLY LYS GLN SER ILE ALA ILE SEQRES 8 D 359 ASP ASP CYS THR PHE HIS GLN CYS VAL ARG LEU SER LYS SEQRES 9 D 359 PHE ASP SER GLU ARG SER ILE SER PHE ILE PRO PRO ASP SEQRES 10 D 359 GLY GLU PHE GLU LEU MET ARG TYR ARG THR THR LYS ASP SEQRES 11 D 359 ILE ILE LEU PRO PHE ARG VAL ILE PRO LEU VAL ARG GLU SEQRES 12 D 359 VAL GLY ARG THR LYS LEU GLU VAL LYS VAL VAL ILE LYS SEQRES 13 D 359 SER ASN PHE LYS PRO SER LEU LEU ALA GLN LYS ILE GLU SEQRES 14 D 359 VAL ARG ILE PRO THR PRO LEU ASN THR SER GLY VAL GLN SEQRES 15 D 359 VAL ILE CYS MET LYS GLY LYS ALA LYS TYR LYS ALA SER SEQRES 16 D 359 GLU ASN ALA ILE VAL TRP LYS ILE LYS ARG MET ALA GLY SEQRES 17 D 359 MET LYS GLU SER GLN ILE SER ALA GLU ILE GLU LEU LEU SEQRES 18 D 359 PRO THR ASN ASP LYS LYS LYS TRP ALA ARG PRO PRO ILE SEQRES 19 D 359 SER MET ASN PHE GLU VAL PRO PHE ALA PRO SER GLY LEU SEQRES 20 D 359 LYS VAL ARG TYR LEU LYS VAL PHE GLU PRO LYS LEU ASN SEQRES 21 D 359 TYR SER ASP HIS ASP VAL ILE LYS TRP VAL ARG TYR ILE SEQRES 22 D 359 GLY ARG SER GLY ILE TYR GLU THR ARG CYS GLY ALA SER SEQRES 23 D 359 GLY SER ALA GLY SER ALA GLY PRO SER GLY ALA GLY SER SEQRES 24 D 359 ALA GLY SER ALA GLY PRO SER ALA GLY SER ALA GLY SER SEQRES 25 D 359 ALA GLY SER GLY SER ALA GLY SER ALA PRO GLY PRO ASP SEQRES 26 D 359 VAL ASP GLU GLU GLY TYR SER ILE LYS PRO GLU THR ASN SEQRES 27 D 359 GLN ASN ASP THR LYS GLU ASN HIS PHE TYR SER SER SER SEQRES 28 D 359 ASP SER ASP SER GLU ASP GLU GLU HET GOL B 601 6 HET GOL B 602 6 HET GOL D 601 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *16(H2 O) HELIX 1 AA1 ILE B 220 LYS B 224 5 5 HELIX 2 AA2 ARG B 253 ARG B 261 1 9 HELIX 3 AA3 HIS B 416 VAL B 418 5 3 HELIX 4 AA4 ARG D 253 GLU D 260 1 8 HELIX 5 AA5 HIS D 416 VAL D 418 5 3 SHEET 1 AA1 9 ASP B 245 PHE B 248 0 SHEET 2 AA1 9 GLY B 270 THR B 279 -1 O ARG B 276 N THR B 247 SHEET 3 AA1 9 VAL B 191 TYR B 205 -1 N VAL B 196 O THR B 279 SHEET 4 AA1 9 GLU B 172 MET B 185 -1 N ASP B 176 O VAL B 201 SHEET 5 AA1 9 ILE B 419 THR B 433 1 O ILE B 430 N LEU B 183 SHEET 6 AA1 9 ILE B 386 VAL B 392 -1 N VAL B 392 O GLY B 426 SHEET 7 AA1 9 LEU B 316 PRO B 325 -1 N ARG B 323 O SER B 387 SHEET 8 AA1 9 ALA B 350 ALA B 359 -1 O TRP B 353 N VAL B 322 SHEET 9 AA1 9 LYS B 341 LYS B 345 -1 N LYS B 341 O LYS B 354 SHEET 1 AA2 4 ILE B 263 PHE B 265 0 SHEET 2 AA2 4 GLU B 211 MET B 216 -1 N CYS B 212 O PHE B 265 SHEET 3 AA2 4 VAL B 401 GLU B 408 -1 O TYR B 403 N GLY B 215 SHEET 4 AA2 4 TYR B 413 SER B 414 -1 O TYR B 413 N GLU B 408 SHEET 1 AA3 4 PHE B 287 VAL B 296 0 SHEET 2 AA3 4 LYS B 300 SER B 309 -1 O LYS B 308 N ARG B 288 SHEET 3 AA3 4 GLN B 365 LEU B 372 -1 O ILE B 370 N LEU B 301 SHEET 4 AA3 4 THR B 330 CYS B 337 -1 N ILE B 336 O SER B 367 SHEET 1 AA4 9 ASP D 245 PHE D 248 0 SHEET 2 AA4 9 GLY D 270 THR D 279 -1 O ARG D 276 N THR D 247 SHEET 3 AA4 9 VAL D 191 TYR D 205 -1 N VAL D 196 O THR D 279 SHEET 4 AA4 9 GLU D 172 MET D 185 -1 N ASP D 176 O VAL D 201 SHEET 5 AA4 9 ILE D 419 THR D 433 1 O ARG D 427 N GLU D 179 SHEET 6 AA4 9 ILE D 386 VAL D 392 -1 N VAL D 392 O GLY D 426 SHEET 7 AA4 9 LEU D 316 PRO D 325 -1 N GLN D 318 O GLU D 391 SHEET 8 AA4 9 ALA D 350 ALA D 359 -1 O ILE D 351 N ILE D 324 SHEET 9 AA4 9 LYS D 341 LYS D 345 -1 N LYS D 343 O VAL D 352 SHEET 1 AA5 3 ILE D 263 PHE D 265 0 SHEET 2 AA5 3 CYS D 212 GLY D 215 -1 N PHE D 214 O ILE D 263 SHEET 3 AA5 3 TYR D 403 LYS D 405 -1 O TYR D 403 N GLY D 215 SHEET 1 AA6 4 PHE D 287 VAL D 296 0 SHEET 2 AA6 4 LYS D 300 SER D 309 -1 O VAL D 306 N ILE D 290 SHEET 3 AA6 4 GLU D 363 LEU D 372 -1 O ILE D 370 N LEU D 301 SHEET 4 AA6 4 THR D 330 CYS D 337 -1 N ILE D 336 O SER D 367 SHEET 1 AA7 2 PHE D 407 GLU D 408 0 SHEET 2 AA7 2 TYR D 413 SER D 414 -1 O TYR D 413 N GLU D 408 SITE 1 AC1 4 ASN B 182 HIS B 195 SER B 197 ARG B 278 SITE 1 AC2 5 ALA B 194 THR B 280 LYS B 281 ASP B 282 SITE 2 AC2 5 ILE B 283 SITE 1 AC3 4 ARG D 170 VAL D 252 LEU D 254 SER D 255 CRYST1 116.046 55.380 167.735 90.00 109.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008617 0.000000 0.002976 0.00000 SCALE2 0.000000 0.018057 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006307 0.00000