HEADER FLUORESCENT PROTEIN 12-MAY-21 7OIN
TITLE CRYSTAL STRUCTURE OF LSSMSCARLET - A GENETICALLY ENCODED RED
TITLE 2 FLUORESCENT PROTEIN WITH A LARGE STOKES SHIFT
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LSSMSCARLET - GENETICALLY ENCODED RED FLUORESCENT PROTEINS
COMPND 3 WITH A LARGE STOKES SHIFT;
COMPND 4 CHAIN: B;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: DISCOSOMA SP.;
SOURCE 3 ORGANISM_TAXID: 86600;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS FLUORESCENT PROTEIN, MSCARLET
EXPDTA X-RAY DIFFRACTION
AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,P.V.DOROVATOVSKII,O.M.SUBACH,A.V.VLASKINA,
AUTHOR 2 Y.K.AGAPOVA,O.I.IVASHKINA,V.O.POPOV,F.V.SUBACH
REVDAT 3 31-JAN-24 7OIN 1 REMARK
REVDAT 2 14-SEP-22 7OIN 1 COMPND SOURCE REMARK DBREF
REVDAT 2 2 1 SEQADV SEQRES HET HETNAM
REVDAT 2 3 1 HETSYN FORMUL HELIX SHEET
REVDAT 2 4 1 LINK ATOM
REVDAT 1 16-FEB-22 7OIN 0
JRNL AUTH O.M.SUBACH,A.V.VLASKINA,Y.K.AGAPOVA,P.V.DOROVATOVSKII,
JRNL AUTH 2 A.Y.NIKOLAEVA,O.I.IVASHKINA,V.O.POPOV,K.D.PIATKEVICH,
JRNL AUTH 3 M.G.KHRENOVA,T.A.SMIRNOVA,K.M.BOYKO,F.V.SUBACH
JRNL TITL LSSMSCARLET, DCYRFP2S, DCYOFP2S AND CRISPRED2S, GENETICALLY
JRNL TITL 2 ENCODED RED FLUORESCENT PROTEINS WITH A LARGE STOKES SHIFT.
JRNL REF INT J MOL SCI V. 22 2021
JRNL REFN ESSN 1422-0067
JRNL PMID 34884694
JRNL DOI 10.3390/IJMS222312887
REMARK 2
REMARK 2 RESOLUTION. 1.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0267
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.43
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8
REMARK 3 NUMBER OF REFLECTIONS : 40220
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.165
REMARK 3 R VALUE (WORKING SET) : 0.164
REMARK 3 FREE R VALUE : 0.190
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 2021
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2994
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2540
REMARK 3 BIN FREE R VALUE SET COUNT : 159
REMARK 3 BIN FREE R VALUE : 0.2520
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1801
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 7
REMARK 3 SOLVENT ATOMS : 272
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.78
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.46000
REMARK 3 B22 (A**2) : -0.09000
REMARK 3 B33 (A**2) : 0.63000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.31000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.061
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.223
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1922 ; 0.016 ; 0.013
REMARK 3 BOND LENGTHS OTHERS (A): 1797 ; 0.007 ; 0.017
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2590 ; 2.164 ; 1.672
REMARK 3 BOND ANGLES OTHERS (DEGREES): 4162 ; 1.572 ; 1.590
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 7.842 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;31.387 ;21.404
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;12.355 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.478 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.125 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2135 ; 0.015 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.005 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 7OIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-21.
REMARK 100 THE DEPOSITION ID IS D_1292115810.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 12-APR-21
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : KURCHATOV SNC
REMARK 200 BEAMLINE : K4.4
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.75
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42242
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400
REMARK 200 RESOLUTION RANGE LOW (A) : 34.430
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 200 DATA REDUNDANCY : 6.000
REMARK 200 R MERGE (I) : 0.13700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.20
REMARK 200 R MERGE FOR SHELL (I) : 0.61500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 5LK4
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 30.77
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LITHIUM SULFATE, 0.1M AMMONIUM
REMARK 280 ACETATE, 0.1 M BIS-TRIS PH 6.5, 23% PEG 3350, VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 288K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.25950
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.67850
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.25950
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.67850
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 10880 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH B 446 LIES ON A SPECIAL POSITION.
REMARK 375 HOH B 608 LIES ON A SPECIAL POSITION.
REMARK 375 HOH B 641 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET B -41
REMARK 465 GLY B -40
REMARK 465 GLY B -39
REMARK 465 SER B -38
REMARK 465 HIS B -37
REMARK 465 HIS B -36
REMARK 465 HIS B -35
REMARK 465 HIS B -34
REMARK 465 HIS B -33
REMARK 465 HIS B -32
REMARK 465 GLY B -31
REMARK 465 MET B -30
REMARK 465 ALA B -29
REMARK 465 SER B -28
REMARK 465 MET B -27
REMARK 465 THR B -26
REMARK 465 GLY B -25
REMARK 465 GLY B -24
REMARK 465 GLN B -23
REMARK 465 GLN B -22
REMARK 465 MET B -21
REMARK 465 GLY B -20
REMARK 465 ARG B -19
REMARK 465 ASP B -18
REMARK 465 LEU B -17
REMARK 465 TYR B -16
REMARK 465 ASP B -15
REMARK 465 ASP B -14
REMARK 465 ASP B -13
REMARK 465 ASP B -12
REMARK 465 LYS B -11
REMARK 465 GLU B -10
REMARK 465 ASN B -9
REMARK 465 LEU B -8
REMARK 465 TYR B -7
REMARK 465 PHE B -6
REMARK 465 GLN B -5
REMARK 465 GLY B -4
REMARK 465 HIS B -3
REMARK 465 MET B -2
REMARK 465 ARG B -1
REMARK 465 SER B 0
REMARK 465 MET B 1
REMARK 465 GLY B 227
REMARK 465 LYS B 233
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU B 33 CG CD OE1 OE2
REMARK 470 LYS B 94 CD CE NZ
REMARK 470 LYS B 164 CE NZ
REMARK 470 ASP B 171 CG OD1 OD2
REMARK 470 GLU B 208 CG CD OE1 OE2
REMARK 470 MET B 228 CG SD CE
REMARK 470 GLU B 230 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU B 155 CD GLU B 155 OE1 -0.069
REMARK 500 GLU B 220 CD GLU B 220 OE1 -0.101
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES
REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES
REMARK 500 ARG B 180 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES
REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO B 56 35.28 -88.98
REMARK 500 PHE B 74 53.13 -110.05
REMARK 500 MET B 143 45.17 -141.93
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA B 302 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH B 498 O
REMARK 620 2 HOH B 614 O 108.8
REMARK 620 N 1
DBREF 7OIN B 8 223 UNP Q9U6Y8 RFP_DISSP 7 221
SEQADV 7OIN MET B -41 UNP Q9U6Y8 INITIATING METHIONINE
SEQADV 7OIN GLY B -40 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B -39 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN SER B -38 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -37 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -36 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -35 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -34 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -33 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -32 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B -31 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN MET B -30 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ALA B -29 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN SER B -28 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN MET B -27 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN THR B -26 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B -25 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B -24 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLN B -23 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLN B -22 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN MET B -21 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B -20 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ARG B -19 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASP B -18 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN LEU B -17 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN TYR B -16 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASP B -15 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASP B -14 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASP B -13 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASP B -12 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN LYS B -11 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLU B -10 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASN B -9 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN LEU B -8 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN TYR B -7 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN PHE B -6 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLN B -5 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B -4 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B -3 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN MET B -2 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ARG B -1 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN SER B 0 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN MET B 1 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN VAL B 2 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN SER B 3 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN LYS B 4 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B 5 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLU B 6 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ALA B 7 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN HIS B 18 UNP Q9U6Y8 ARG 17 ENGINEERED MUTATION
SEQADV 7OIN SER B 22 UNP Q9U6Y8 THR 21 ENGINEERED MUTATION
SEQADV 7OIN MET B 23 UNP Q9U6Y8 VAL 22 ENGINEERED MUTATION
SEQADV 7OIN THR B 42 UNP Q9U6Y8 HIS 41 ENGINEERED MUTATION
SEQADV 7OIN GLN B 43 UNP Q9U6Y8 ASN 42 ENGINEERED MUTATION
SEQADV 7OIN ALA B 45 UNP Q9U6Y8 VAL 44 ENGINEERED MUTATION
SEQADV 7OIN SER B 58 UNP Q9U6Y8 ALA 57 ENGINEERED MUTATION
SEQADV 7OIN NRQ B 67 UNP Q9U6Y8 GLN 66 CHROMOPHORE
SEQADV 7OIN NRQ B 67 UNP Q9U6Y8 TYR 67 CHROMOPHORE
SEQADV 7OIN NRQ B 67 UNP Q9U6Y8 GLY 68 CHROMOPHORE
SEQADV 7OIN ARG B 72 UNP Q9U6Y8 LYS 70 ENGINEERED MUTATION
SEQADV 7OIN ALA B 73 UNP Q9U6Y8 VAL 71 ENGINEERED MUTATION
SEQADV 7OIN PHE B 74 UNP Q9U6Y8 TYR 72 ENGINEERED MUTATION
SEQADV 7OIN ILE B 75 UNP Q9U6Y8 VAL 73 ENGINEERED MUTATION
SEQADV 7OIN HIS B 85 UNP Q9U6Y8 LYS 83 ENGINEERED MUTATION
SEQADV 7OIN GLN B 87 UNP Q9U6Y8 LEU 85 ENGINEERED MUTATION
SEQADV 7OIN ALA B 106 UNP Q9U6Y8 VAL 104 ENGINEERED MUTATION
SEQADV 7OIN THR B 113 UNP Q9U6Y8 SER 111 ENGINEERED MUTATION
SEQADV 7OIN GLU B 116 UNP Q9U6Y8 GLN 114 ENGINEERED MUTATION
SEQADV 7OIN THR B 119 UNP Q9U6Y8 CYS 117 ENGINEERED MUTATION
SEQADV 7OIN LEU B 120 UNP Q9U6Y8 PHE 118 ENGINEERED MUTATION
SEQADV 7OIN GLU B 123 UNP Q9U6Y8 LYS 121 ENGINEERED MUTATION
SEQADV 7OIN LEU B 126 UNP Q9U6Y8 PHE 124 ENGINEERED MUTATION
SEQADV 7OIN ARG B 127 UNP Q9U6Y8 ILE 125 ENGINEERED MUTATION
SEQADV 7OIN THR B 129 UNP Q9U6Y8 VAL 127 ENGINEERED MUTATION
SEQADV 7OIN PRO B 133 UNP Q9U6Y8 SER 131 ENGINEERED MUTATION
SEQADV 7OIN LEU B 145 UNP Q9U6Y8 TRP 143 ENGINEERED MUTATION
SEQADV 7OIN ASP B 148 UNP Q9U6Y8 SER 146 ENGINEERED MUTATION
SEQADV 7OIN GLU B 155 UNP Q9U6Y8 ARG 153 ENGINEERED MUTATION
SEQADV 7OIN ASP B 162 UNP Q9U6Y8 GLU 160 ENGINEERED MUTATION
SEQADV 7OIN LYS B 164 UNP Q9U6Y8 HIS 162 ENGINEERED MUTATION
SEQADV 7OIN MET B 165 UNP Q9U6Y8 LYS 163 ENGINEERED MUTATION
SEQADV 7OIN ARG B 168 UNP Q9U6Y8 LYS 166 ENGINEERED MUTATION
SEQADV 7OIN ARG B 174 UNP Q9U6Y8 HIS 172 ENGINEERED MUTATION
SEQADV 7OIN ALA B 177 UNP Q9U6Y8 VAL 175 ENGINEERED MUTATION
SEQADV 7OIN ASP B 178 UNP Q9U6Y8 GLU 176 ENGINEERED MUTATION
SEQADV 7OIN VAL B 179 UNP Q9U6Y8 PHE 177 ENGINEERED MUTATION
SEQADV 7OIN ARG B 180 UNP Q9U6Y8 LYS 178 ENGINEERED MUTATION
SEQADV 7OIN THR B 181 UNP Q9U6Y8 SER 179 ENGINEERED MUTATION
SEQADV 7OIN THR B 182 UNP Q9U6Y8 ILE 180 ENGINEERED MUTATION
SEQADV 7OIN LYS B 184 UNP Q9U6Y8 MET 182 ENGINEERED MUTATION
SEQADV 7OIN MET B 191 UNP Q9U6Y8 LEU 189 ENGINEERED MUTATION
SEQADV 7OIN ALA B 194 UNP Q9U6Y8 TYR 192 ENGINEERED MUTATION
SEQADV 7OIN ASN B 196 UNP Q9U6Y8 TYR 194 ENGINEERED MUTATION
SEQADV 7OIN ARG B 199 UNP Q9U6Y8 SER 197 ENGINEERED MUTATION
SEQADV 7OIN VAL B 212 UNP Q9U6Y8 ILE 210 ENGINEERED MUTATION
SEQADV 7OIN SER B 219 UNP Q9U6Y8 THR 217 ENGINEERED MUTATION
SEQADV 7OIN SER B 224 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN THR B 225 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B 226 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLY B 227 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN MET B 228 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN ASP B 229 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN GLU B 230 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN LEU B 231 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN TYR B 232 UNP Q9U6Y8 EXPRESSION TAG
SEQADV 7OIN LYS B 233 UNP Q9U6Y8 EXPRESSION TAG
SEQRES 1 B 272 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA
SEQRES 2 B 272 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR
SEQRES 3 B 272 ASP ASP ASP ASP LYS GLU ASN LEU TYR PHE GLN GLY HIS
SEQRES 4 B 272 MET ARG SER MET VAL SER LYS GLY GLU ALA VAL ILE LYS
SEQRES 5 B 272 GLU PHE MET ARG PHE LYS VAL HIS MET GLU GLY SER MET
SEQRES 6 B 272 ASN GLY HIS GLU PHE GLU ILE GLU GLY GLU GLY GLU GLY
SEQRES 7 B 272 ARG PRO TYR GLU GLY THR GLN THR ALA LYS LEU LYS VAL
SEQRES 8 B 272 THR LYS GLY GLY PRO LEU PRO PHE SER TRP ASP ILE LEU
SEQRES 9 B 272 SER PRO GLN PHE NRQ SER ARG ALA PHE ILE LYS HIS PRO
SEQRES 10 B 272 ALA ASP ILE PRO ASP TYR HIS LYS GLN SER PHE PRO GLU
SEQRES 11 B 272 GLY PHE LYS TRP GLU ARG VAL MET ASN PHE GLU ASP GLY
SEQRES 12 B 272 GLY ALA VAL THR VAL THR GLN ASP THR SER LEU GLU ASP
SEQRES 13 B 272 GLY THR LEU ILE TYR GLU VAL LYS LEU ARG GLY THR ASN
SEQRES 14 B 272 PHE PRO PRO ASP GLY PRO VAL MET GLN LYS LYS THR MET
SEQRES 15 B 272 GLY LEU GLU ALA ASP THR GLU ARG LEU TYR PRO GLU ASP
SEQRES 16 B 272 GLY VAL LEU LYS GLY ASP ILE LYS MET ALA LEU ARG LEU
SEQRES 17 B 272 LYS ASP GLY GLY ARG TYR LEU ALA ASP VAL ARG THR THR
SEQRES 18 B 272 TYR LYS ALA LYS LYS PRO VAL GLN MET PRO GLY ALA TYR
SEQRES 19 B 272 ASN VAL ASP ARG LYS LEU ASP ILE THR SER HIS ASN GLU
SEQRES 20 B 272 ASP TYR THR VAL VAL GLU GLN TYR GLU ARG SER GLU GLY
SEQRES 21 B 272 ARG HIS SER THR GLY GLY MET ASP GLU LEU TYR LYS
MODRES 7OIN NRQ B 67 GLN CHROMOPHORE
MODRES 7OIN NRQ B 67 TYR CHROMOPHORE
MODRES 7OIN NRQ B 67 GLY CHROMOPHORE
HET NRQ B 67 23
HET SO4 B 301 5
HET NA B 302 1
HET NA B 303 1
HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO)
HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-
HETNAM 3 NRQ YL}ACETIC ACID
HETNAM SO4 SULFATE ION
HETNAM NA SODIUM ION
HETSYN NRQ CHROMOPHORE (MET-TYR-GLY)
FORMUL 1 NRQ C16 H17 N3 O4 S
FORMUL 2 SO4 O4 S 2-
FORMUL 3 NA 2(NA 1+)
FORMUL 5 HOH *272(H2 O)
HELIX 1 AA1 GLY B 5 ILE B 9 5 5
HELIX 2 AA2 SER B 58 PHE B 66 5 9
HELIX 3 AA3 HIS B 85 PHE B 89 5 5
SHEET 1 AA113 THR B 142 LEU B 145 0
SHEET 2 AA113 VAL B 158 LEU B 169 -1 O ARG B 168 N GLY B 144
SHEET 3 AA113 ARG B 174 ALA B 185 -1 O THR B 181 N GLY B 161
SHEET 4 AA113 PHE B 93 PHE B 101 -1 N LYS B 94 O LYS B 184
SHEET 5 AA113 ALA B 106 GLU B 116 -1 O VAL B 109 N ARG B 97
SHEET 6 AA113 THR B 119 THR B 129 -1 O THR B 119 N GLU B 116
SHEET 7 AA113 MET B 13 MET B 23 1 N SER B 22 O GLY B 128
SHEET 8 AA113 HIS B 26 ARG B 37 -1 O PHE B 28 N GLY B 21
SHEET 9 AA113 THR B 42 LYS B 51 -1 O LYS B 48 N GLU B 31
SHEET 10 AA113 VAL B 212 ARG B 222 -1 O VAL B 213 N LEU B 47
SHEET 11 AA113 TYR B 195 HIS B 206 -1 N ASN B 196 O ARG B 222
SHEET 12 AA113 ASP B 148 GLU B 155 -1 N LEU B 152 O TYR B 195
SHEET 13 AA113 VAL B 158 LEU B 169 -1 O ASP B 162 N ARG B 151
LINK C PHE B 66 N1 NRQ B 67 1555 1555 1.28
LINK C3 NRQ B 67 N SER B 71 1555 1555 1.34
LINK OE2 GLU B 217 NA NA B 303 1555 1555 3.03
LINK NA NA B 302 O HOH B 498 1555 1555 3.00
LINK NA NA B 302 O HOH B 614 1555 1555 2.72
CISPEP 1 GLY B 53 PRO B 54 0 -10.85
CISPEP 2 PHE B 89 PRO B 90 0 -2.43
CRYST1 84.519 45.357 59.042 90.00 102.34 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011832 0.000000 0.002588 0.00000
SCALE2 0.000000 0.022047 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017337 0.00000