HEADER VIRAL PROTEIN 13-MAY-21 7OJ4 TITLE CRYSTAL STRUCTURE OF APO NS3 HELICASE FROM TICK-BORNE ENCEPHALITIS TITLE 2 VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 HELICASE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE PROTEASE NS3; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TICK-BORNE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11084; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIPL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS RNA HELICASE, HYDROLASE, NON-STRUCTURAL PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.D.ANINDITA,P.HAVLICKOVA,B.KASCAKOVA,P.GRINKEVICH,J.BRYNDA,Z.FRANTA REVDAT 6 31-JAN-24 7OJ4 1 JRNL REVDAT 5 28-SEP-22 7OJ4 1 JRNL REVDAT 4 14-SEP-22 7OJ4 1 JRNL REVDAT 3 07-SEP-22 7OJ4 1 JRNL REVDAT 2 18-MAY-22 7OJ4 1 REMARK REVDAT 1 23-MAR-22 7OJ4 0 SPRSDE 23-MAR-22 7OJ4 7AY4 JRNL AUTH P.D.ANINDITA,M.HALBEISEN,D.REHA,R.TUMA,Z.FRANTA JRNL TITL MECHANISTIC INSIGHT INTO THE RNA-STIMULATED ATPASE ACTIVITY JRNL TITL 2 OF TICK-BORNE ENCEPHALITIS VIRUS HELICASE. JRNL REF J.BIOL.CHEM. V. 298 02383 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35987382 JRNL DOI 10.1016/J.JBC.2022.102383 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.ANINDITA,M.HALBEISEN,D.REHA,R.TUMA,Z.FRANTA REMARK 1 TITL MECHANISTIC INSIGHT INTO THE ATP HYDROLYSIS CYCLE OF REMARK 1 TITL 2 TICK-BORNE ENCEPHALITIS VIRUS HELICASE REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.03.15.484399 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 48205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.908 REMARK 3 FREE R VALUE TEST SET COUNT : 2366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3272 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 153 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3366 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02900 REMARK 3 B22 (A**2) : -0.02900 REMARK 3 B33 (A**2) : 0.05800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.594 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3449 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3227 ; 0.018 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4673 ; 1.934 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7412 ; 1.802 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 7.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;29.291 ;20.539 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;14.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;20.650 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3916 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 834 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 652 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 23 ; 0.128 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1691 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1706 ; 8.003 ; 4.306 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1705 ; 7.997 ; 4.305 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2129 ; 8.663 ; 6.437 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2130 ; 8.662 ; 6.438 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1743 ; 9.855 ; 4.826 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1744 ; 9.853 ; 4.827 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2544 ;10.912 ; 6.965 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2545 ;10.910 ; 6.966 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6676 ; 9.358 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7OJ4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48205 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.828 REMARK 200 RESOLUTION RANGE LOW (A) : 49.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6ADW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS TRIS PROPANE PH 6.5, 0.2 M REMARK 280 SODIUM ACETATE TRIHYDRATE, 20% W/V PEG 3350, 10% V/V ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.02400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.64900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.64900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.01200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.64900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.64900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.03600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.64900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.64900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.01200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.64900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.64900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 147.03600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.02400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 149 REMARK 465 GLY A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 SER A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 HIS A 164 REMARK 465 ILE A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 ASP A 168 REMARK 465 ASP A 169 REMARK 465 LYS A 170 REMARK 465 HIS A 171 REMARK 465 MET A 172 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 SER A 175 REMARK 465 ARG A 176 REMARK 465 PRO A 177 REMARK 465 ASN A 178 REMARK 465 LEU A 179 REMARK 465 PRO A 180 REMARK 465 GLN A 181 REMARK 465 PRO A 251 REMARK 465 ALA A 252 REMARK 465 VAL A 253 REMARK 465 SER A 254 REMARK 465 ASP A 255 REMARK 465 GLN A 256 REMARK 465 GLN A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 259 REMARK 465 THR A 502 REMARK 465 LEU A 503 REMARK 465 ARG A 504 REMARK 465 GLY A 505 REMARK 465 PRO A 506 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 223 NE CZ NH1 NH2 REMARK 470 ARG A 231 CD NE CZ NH1 NH2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 611 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 250 C SER A 250 O 0.353 REMARK 500 GLU A 349 CD GLU A 349 OE1 0.093 REMARK 500 GLN A 383 CD GLN A 383 OE1 0.143 REMARK 500 GLU A 606 CD GLU A 606 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 450 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG A 450 CB - CG - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 203 41.31 -95.03 REMARK 500 ARG A 208 -60.26 -128.84 REMARK 500 ASN A 242 115.33 -38.56 REMARK 500 ARG A 351 -71.32 -126.34 REMARK 500 ARG A 595 68.13 -157.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 511 GLY A 512 -144.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BLV RELATED DB: PDB REMARK 900 7BLV CONTAINS THE ADP-BOUND NS3H PROTEIN REMARK 900 RELATED ID: 7BM0 RELATED DB: PDB REMARK 900 7BM0 CONTAINS THE AMPPNP-BOUND NS3H PROTEIN REMARK 900 RELATED ID: 7NXU RELATED DB: PDB REMARK 900 7NXU CONTAINS THE ADP-PI-BOUND NS3H PROTEIN DBREF1 7OJ4 A 173 621 UNP A0A2S1PWV0_9FLAV DBREF2 7OJ4 A A0A2S1PWV0 1662 2110 SEQADV 7OJ4 MET A 149 UNP A0A2S1PWV INITIATING METHIONINE SEQADV 7OJ4 GLY A 150 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 151 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 152 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 153 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 154 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 155 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 156 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 157 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 158 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 159 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 160 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 SER A 161 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 SER A 162 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 GLY A 163 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 164 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 ILE A 165 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 ASP A 166 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 ASP A 167 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 ASP A 168 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 ASP A 169 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 LYS A 170 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 HIS A 171 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7OJ4 MET A 172 UNP A0A2S1PWV EXPRESSION TAG SEQRES 1 A 473 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 473 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET GLU LYS SEQRES 3 A 473 SER ARG PRO ASN LEU PRO GLN ALA VAL VAL GLY THR GLY SEQRES 4 A 473 TRP THR SER LYS GLY GLN ILE THR VAL LEU ASP MET HIS SEQRES 5 A 473 PRO GLY SER GLY LYS THR HIS ARG VAL LEU PRO GLU LEU SEQRES 6 A 473 ILE ARG GLN CYS ILE ASP ARG ARG LEU ARG THR LEU VAL SEQRES 7 A 473 LEU ALA PRO THR ARG VAL VAL LEU LYS GLU MET GLU ARG SEQRES 8 A 473 ALA LEU ASN GLY LYS ARG VAL ARG PHE HIS SER PRO ALA SEQRES 9 A 473 VAL SER ASP GLN GLN ALA GLY GLY ALA ILE VAL ASP VAL SEQRES 10 A 473 MET CYS HIS ALA THR TYR VAL ASN ARG ARG LEU LEU PRO SEQRES 11 A 473 GLN GLY ARG GLN ASN TRP GLU VAL ALA ILE MET ASP GLU SEQRES 12 A 473 ALA HIS TRP THR ASP PRO HIS SER ILE ALA ALA ARG GLY SEQRES 13 A 473 HIS LEU TYR THR LEU ALA LYS GLU ASN LYS CYS ALA LEU SEQRES 14 A 473 VAL LEU MET THR ALA THR PRO PRO GLY LYS SER GLU PRO SEQRES 15 A 473 PHE PRO GLU SER ASN GLY ALA ILE THR SER GLU GLU ARG SEQRES 16 A 473 GLN ILE PRO ASP GLY GLU TRP ARG ASP GLY PHE ASP TRP SEQRES 17 A 473 ILE THR GLU TYR GLU GLY ARG THR ALA TRP PHE VAL PRO SEQRES 18 A 473 SER ILE ALA LYS GLY GLY ALA ILE ALA ARG THR LEU ARG SEQRES 19 A 473 GLN LYS GLY LYS SER VAL ILE CYS LEU ASN SER LYS THR SEQRES 20 A 473 PHE GLU LYS ASP TYR SER ARG VAL ARG ASP GLU LYS PRO SEQRES 21 A 473 ASP PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA SEQRES 22 A 473 ASN LEU ASP VAL SER ARG VAL ILE ASP GLY ARG THR ASN SEQRES 23 A 473 ILE LYS PRO GLU GLU VAL ASP GLY LYS VAL GLU LEU THR SEQRES 24 A 473 GLY THR ARG ARG VAL THR THR ALA SER ALA ALA GLN ARG SEQRES 25 A 473 ARG GLY ARG VAL GLY ARG GLN ASP GLY ARG THR ASP GLU SEQRES 26 A 473 TYR ILE TYR SER GLY GLN CYS ASP ASP ASP ASP SER GLY SEQRES 27 A 473 LEU VAL GLN TRP LYS GLU ALA GLN ILE LEU LEU ASP ASN SEQRES 28 A 473 ILE THR THR LEU ARG GLY PRO VAL ALA THR PHE TYR GLY SEQRES 29 A 473 PRO GLU GLN ASP LYS MET PRO GLU VAL ALA GLY HIS PHE SEQRES 30 A 473 ARG LEU THR GLU GLU LYS ARG LYS HIS PHE ARG HIS LEU SEQRES 31 A 473 LEU THR HIS CYS ASP PHE THR PRO TRP LEU ALA TRP HIS SEQRES 32 A 473 VAL ALA ALA ASN VAL SER SER VAL THR ASP ARG SER TRP SEQRES 33 A 473 THR TRP GLU GLY PRO GLU ALA ASN ALA VAL ASP GLU ALA SEQRES 34 A 473 SER GLY ASP LEU VAL THR PHE ARG SER PRO ASN GLY ALA SEQRES 35 A 473 GLU ARG THR LEU ARG PRO VAL TRP LYS ASP ALA ARG MET SEQRES 36 A 473 PHE LYS GLU GLY ARG ASP ILE LYS GLU PHE VAL ALA TYR SEQRES 37 A 473 ALA SER GLY ARG ARG FORMUL 2 HOH *206(H2 O) HELIX 1 AA1 ARG A 208 ARG A 221 1 14 HELIX 2 AA2 THR A 230 LEU A 241 1 12 HELIX 3 AA3 HIS A 268 LEU A 276 1 9 HELIX 4 AA4 ASP A 296 GLU A 312 1 17 HELIX 5 AA5 PHE A 354 TYR A 360 1 7 HELIX 6 AA6 SER A 370 LYS A 384 1 15 HELIX 7 AA7 THR A 395 TYR A 400 1 6 HELIX 8 AA8 TYR A 400 LYS A 407 1 8 HELIX 9 AA9 ASP A 415 MET A 419 5 5 HELIX 10 AB1 THR A 453 GLY A 462 1 10 HELIX 11 AB2 LEU A 487 ASP A 498 1 12 HELIX 12 AB3 TYR A 511 MET A 518 5 8 HELIX 13 AB4 THR A 528 CYS A 542 1 15 HELIX 14 AB5 THR A 545 VAL A 556 1 12 HELIX 15 AB6 ARG A 562 TRP A 566 5 5 HELIX 16 AB7 PRO A 569 ALA A 573 5 5 HELIX 17 AB8 ASP A 600 PHE A 604 5 5 HELIX 18 AB9 ASP A 609 SER A 618 1 10 SHEET 1 AA1 6 ILE A 194 LEU A 197 0 SHEET 2 AA1 6 ALA A 316 MET A 320 1 O LEU A 317 N THR A 195 SHEET 3 AA1 6 VAL A 286 ASP A 290 1 N ALA A 287 O VAL A 318 SHEET 4 AA1 6 THR A 224 ALA A 228 1 N LEU A 225 O VAL A 286 SHEET 5 AA1 6 VAL A 263 CYS A 267 1 O ASP A 264 N THR A 224 SHEET 6 AA1 6 VAL A 246 PHE A 248 1 N ARG A 247 O VAL A 265 SHEET 1 AA2 6 ALA A 337 GLU A 342 0 SHEET 2 AA2 6 THR A 471 TYR A 476 1 O ASP A 472 N ALA A 337 SHEET 3 AA2 6 ARG A 427 ASP A 430 1 N VAL A 428 O ILE A 475 SHEET 4 AA2 6 THR A 364 PHE A 367 1 N PHE A 367 O ILE A 429 SHEET 5 AA2 6 PHE A 410 THR A 413 1 O VAL A 411 N TRP A 366 SHEET 6 AA2 6 VAL A 388 LEU A 391 1 N ILE A 389 O VAL A 412 SHEET 1 AA3 2 THR A 433 ILE A 435 0 SHEET 2 AA3 2 THR A 449 ARG A 451 -1 O ARG A 450 N ASN A 434 SHEET 1 AA4 2 GLU A 438 VAL A 440 0 SHEET 2 AA4 2 LYS A 443 GLU A 445 -1 O LYS A 443 N VAL A 440 SHEET 1 AA5 2 THR A 583 ARG A 585 0 SHEET 2 AA5 2 GLU A 591 THR A 593 -1 O ARG A 592 N PHE A 584 CRYST1 73.298 73.298 196.048 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013643 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005101 0.00000