HEADER TRANSFERASE 17-MAY-21 7OKC TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI LPXA IN COMPLEX WITH COMPOUND 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O- COMPND 3 ACYLTRANSFERASE; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: FULL-LENGTH PROTEIN; COMPND 6 SYNONYM: UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE; COMPND 7 EC: 2.3.1.129; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: ROSETTA PLYSS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ACYLTRANSFERASE, FATTY ACIDS, LIPID A, LEFT-HANDED PARALLEL BETA- KEYWDS 2 HELIX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.RYAN,A.L.PARKES,M.SOUTHEY,O.A.ANDERSEN,M.ZAHN,J.BARKER, AUTHOR 2 B.L.M.DEJONGE REVDAT 4 31-JAN-24 7OKC 1 REMARK REVDAT 3 27-OCT-21 7OKC 1 JRNL REVDAT 2 13-OCT-21 7OKC 1 REMARK REVDAT 1 06-OCT-21 7OKC 0 JRNL AUTH M.D.RYAN,A.L.PARKES,D.CORBETT,A.P.DICKIE,M.SOUTHEY, JRNL AUTH 2 O.A.ANDERSEN,D.B.STEIN,O.R.BARBEAU,A.SANZONE,P.THOMMES, JRNL AUTH 3 J.BARKER,R.CAIN,C.COMPPER,M.DEJOB,A.DORALI,D.ETHERIDGE, JRNL AUTH 4 S.EVANS,A.FAULKNER,E.GADOULEAU,T.GORMAN,D.HAASE, JRNL AUTH 5 M.HOLBROW-WILSHAW,T.KRULLE,X.LI,C.LUMLEY,B.MERTINS,S.NAPIER, JRNL AUTH 6 R.ODEDRA,K.PAPADOPOULOS,V.ROUMPELAKIS,K.SPEAR,E.TRIMBY, JRNL AUTH 7 J.WILLIAMS,M.ZAHN,A.D.KEEFE,Y.ZHANG,H.T.SOUTTER, JRNL AUTH 8 P.A.CENTRELLA,M.A.CLARK,J.W.CUOZZO,C.E.DUMELIN,B.DENG, JRNL AUTH 9 A.HUNT,E.A.SIGEL,D.M.TROAST,B.L.M.DEJONGE JRNL TITL DISCOVERY OF NOVEL UDP- N -ACETYLGLUCOSAMINE ACYLTRANSFERASE JRNL TITL 2 (LPXA) INHIBITORS WITH ACTIVITY AGAINST PSEUDOMONAS JRNL TITL 3 AERUGINOSA . JRNL REF J.MED.CHEM. V. 64 14377 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34569791 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00888 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1991 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.887 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2063 ; 0.014 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1855 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2795 ; 1.593 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4331 ; 0.975 ; 1.648 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 7.215 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;36.481 ;21.524 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 329 ;14.711 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;19.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 277 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2424 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 391 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 1001 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0088 -3.9450 -5.2556 REMARK 3 T TENSOR REMARK 3 T11: 0.0201 T22: 0.0369 REMARK 3 T33: 0.0199 T12: -0.0098 REMARK 3 T13: 0.0052 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.9129 L22: 0.5772 REMARK 3 L33: 1.4510 L12: -0.1843 REMARK 3 L13: 0.8533 L23: -0.0874 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0247 S13: 0.0027 REMARK 3 S21: -0.0250 S22: -0.0106 S23: 0.0928 REMARK 3 S31: 0.0190 S32: -0.1994 S33: 0.0016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7OKC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25927 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 67.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.24900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : 2.70400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2JF3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M NAH2PO4 / NA2HPO4 PH 6.9, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.04300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.04300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.04300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.04300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.04300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.04300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 48.04300 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 48.04300 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 48.04300 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 48.04300 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 48.04300 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 48.04300 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 48.04300 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 48.04300 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 48.04300 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 48.04300 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 48.04300 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 48.04300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 48.04300 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 48.04300 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 48.04300 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -48.04300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1260 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1285 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1106 O HOH A 1227 2.16 REMARK 500 OE2 GLU A 241 O HOH A 1101 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 216 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 0 22.53 48.60 REMARK 500 VAL A 71 130.50 -35.19 REMARK 500 PHE A 150 -1.66 70.53 REMARK 500 PHE A 162 -2.52 75.03 REMARK 500 TYR A 184 11.73 82.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 132 0.08 SIDE CHAIN REMARK 500 ARG A 204 0.13 SIDE CHAIN REMARK 500 ARG A 209 0.08 SIDE CHAIN REMARK 500 ARG A 258 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 253 O REMARK 620 2 SER A 256 O 88.1 REMARK 620 3 HOH A1255 O 75.9 161.0 REMARK 620 N 1 2 DBREF 7OKC A 1 262 UNP C3TPH2 C3TPH2_ECOLX 1 262 SEQADV 7OKC GLY A -2 UNP C3TPH2 EXPRESSION TAG SEQADV 7OKC SER A -1 UNP C3TPH2 EXPRESSION TAG SEQADV 7OKC HIS A 0 UNP C3TPH2 EXPRESSION TAG SEQRES 1 A 265 GLY SER HIS MET ILE ASP LYS SER ALA PHE VAL HIS PRO SEQRES 2 A 265 THR ALA ILE VAL GLU GLU GLY ALA SER ILE GLY ALA ASN SEQRES 3 A 265 ALA HIS ILE GLY PRO PHE CYS ILE VAL GLY PRO HIS VAL SEQRES 4 A 265 GLU ILE GLY GLU GLY THR VAL LEU LYS SER HIS VAL VAL SEQRES 5 A 265 VAL ASN GLY HIS THR LYS ILE GLY ARG ASP ASN GLU ILE SEQRES 6 A 265 TYR GLN PHE ALA SER ILE GLY GLU VAL ASN GLN ASP LEU SEQRES 7 A 265 LYS TYR ALA GLY GLU PRO THR ARG VAL GLU ILE GLY ASP SEQRES 8 A 265 ARG ASN ARG ILE ARG GLU SER VAL THR ILE HIS ARG GLY SEQRES 9 A 265 THR VAL GLN GLY GLY GLY LEU THR LYS VAL GLY SER ASP SEQRES 10 A 265 ASN LEU LEU MET ILE ASN ALA HIS ILE ALA HIS ASP CYS SEQRES 11 A 265 THR VAL GLY ASN ARG CYS ILE LEU ALA ASN ASN ALA THR SEQRES 12 A 265 LEU ALA GLY HIS VAL SER VAL ASP ASP PHE ALA ILE ILE SEQRES 13 A 265 GLY GLY MET THR ALA VAL HIS GLN PHE CYS ILE ILE GLY SEQRES 14 A 265 ALA HIS VAL MET VAL GLY GLY CYS SER GLY VAL ALA GLN SEQRES 15 A 265 ASP VAL PRO PRO TYR VAL ILE ALA GLN GLY ASN HIS ALA SEQRES 16 A 265 THR PRO PHE GLY VAL ASN ILE GLU GLY LEU LYS ARG ARG SEQRES 17 A 265 GLY PHE SER ARG GLU ALA ILE THR ALA ILE ARG ASN ALA SEQRES 18 A 265 TYR LYS LEU ILE TYR ARG SER GLY LYS THR LEU ASP GLU SEQRES 19 A 265 VAL LYS PRO GLU ILE ALA GLU LEU ALA GLU THR TYR PRO SEQRES 20 A 265 GLU VAL LYS ALA PHE THR ASP PHE PHE ALA ARG SER THR SEQRES 21 A 265 ARG GLY LEU ILE ARG HET VFE A1001 29 HET NA A1002 1 HETNAM VFE 2-[2-(2-CHLOROPHENYL)SULFANYLETHANOYL-[[4-(1,2,4- HETNAM 2 VFE TRIAZOL-1-YL)PHENYL]METHYL]AMINO]-N-METHYL-ETHANAMIDE HETNAM NA SODIUM ION FORMUL 2 VFE C20 H20 CL N5 O2 S FORMUL 3 NA NA 1+ FORMUL 4 HOH *186(H2 O) HELIX 1 AA1 ASN A 198 ARG A 205 1 8 HELIX 2 AA2 SER A 208 ARG A 224 1 17 HELIX 3 AA3 THR A 228 GLU A 241 1 14 HELIX 4 AA4 THR A 242 GLU A 245 5 4 HELIX 5 AA5 VAL A 246 SER A 256 1 11 SHEET 1 AA111 PHE A 7 VAL A 8 0 SHEET 2 AA111 HIS A 25 ILE A 26 1 O ILE A 26 N PHE A 7 SHEET 3 AA111 VAL A 43 LEU A 44 1 O LEU A 44 N HIS A 25 SHEET 4 AA111 GLU A 61 ILE A 62 1 O ILE A 62 N VAL A 43 SHEET 5 AA111 ARG A 91 ILE A 92 1 O ILE A 92 N GLU A 61 SHEET 6 AA111 LEU A 116 LEU A 117 1 O LEU A 117 N ARG A 91 SHEET 7 AA111 ILE A 134 LEU A 135 1 O LEU A 135 N LEU A 116 SHEET 8 AA111 ILE A 152 ILE A 153 1 O ILE A 153 N ILE A 134 SHEET 9 AA111 MET A 170 VAL A 171 1 O VAL A 171 N ILE A 152 SHEET 10 AA111 VAL A 185 GLN A 188 1 O ALA A 187 N MET A 170 SHEET 11 AA111 THR A 193 VAL A 197 -1 O PHE A 195 N ILE A 186 SHEET 1 AA2 9 ILE A 13 VAL A 14 0 SHEET 2 AA2 9 ILE A 31 VAL A 32 1 O VAL A 32 N ILE A 13 SHEET 3 AA2 9 VAL A 49 VAL A 50 1 O VAL A 50 N ILE A 31 SHEET 4 AA2 9 SER A 67 GLU A 70 1 O ILE A 68 N VAL A 49 SHEET 5 AA2 9 THR A 97 HIS A 99 1 O ILE A 98 N GLY A 69 SHEET 6 AA2 9 HIS A 122 ILE A 123 1 O ILE A 123 N THR A 97 SHEET 7 AA2 9 THR A 140 LEU A 141 1 O LEU A 141 N HIS A 122 SHEET 8 AA2 9 ALA A 158 VAL A 159 1 O VAL A 159 N THR A 140 SHEET 9 AA2 9 GLY A 176 VAL A 177 1 O VAL A 177 N ALA A 158 SHEET 1 AA3 8 SER A 19 ILE A 20 0 SHEET 2 AA3 8 VAL A 36 ILE A 38 1 O ILE A 38 N SER A 19 SHEET 3 AA3 8 HIS A 53 ILE A 56 1 O ILE A 56 N GLU A 37 SHEET 4 AA3 8 ARG A 83 ILE A 86 1 O ILE A 86 N LYS A 55 SHEET 5 AA3 8 LEU A 108 VAL A 111 1 O VAL A 111 N GLU A 85 SHEET 6 AA3 8 THR A 128 VAL A 129 1 O VAL A 129 N LYS A 110 SHEET 7 AA3 8 SER A 146 VAL A 147 1 O VAL A 147 N THR A 128 SHEET 8 AA3 8 ILE A 164 ILE A 165 1 O ILE A 165 N SER A 146 LINK O PHE A 253 NA NA A1002 1555 1555 2.86 LINK O SER A 256 NA NA A1002 1555 1555 2.52 LINK NA NA A1002 O HOH A1255 1555 1555 2.49 CISPEP 1 ASN A 190 HIS A 191 0 2.94 CRYST1 96.086 96.086 96.086 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010407 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010407 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010407 0.00000