HEADER TRANSCRIPTION 17-MAY-21 7OKG TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 8E COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 31-JAN-24 7OKG 1 REMARK REVDAT 2 22-DEC-21 7OKG 1 JRNL REVDAT 1 08-DEC-21 7OKG 0 JRNL AUTH M.G.LLOYD,R.HUCKVALE,K.J.CHEUNG,M.J.RODRIGUES,G.W.COLLIE, JRNL AUTH 2 O.A.PIERRAT,M.GATTI IOU,M.CARTER,O.A.DAVIS,P.C.MCANDREW, JRNL AUTH 3 E.GUNNELL,Y.V.LE BIHAN,R.TALBOT,A.T.HENLEY,L.D.JOHNSON, JRNL AUTH 4 A.HAYES,M.D.BRIGHT,F.I.RAYNAUD,M.MENICONI,R.BURKE, JRNL AUTH 5 R.L.M.VAN MONTFORT,O.W.ROSSANESE,B.R.BELLENIE,S.HOELDER JRNL TITL INTO DEEP WATER: OPTIMIZING BCL6 INHIBITORS BY GROWING INTO JRNL TITL 2 A SOLVATED POCKET. JRNL REF J.MED.CHEM. V. 64 17079 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34846884 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00946 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (18-SEP-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 52923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2666 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 51 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.67 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1059 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2190 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1011 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE : 0.2395 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.53 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 48 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1023 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22570 REMARK 3 B22 (A**2) : -1.22570 REMARK 3 B33 (A**2) : 2.45140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.150 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.043 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.042 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.038 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.039 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1246 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1705 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 442 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 271 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1246 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 163 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 20 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1370 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.77 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 12.67 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|5 - 27} REMARK 3 ORIGIN FOR THE GROUP (A): 42.8924 -19.5398 -15.3263 REMARK 3 T TENSOR REMARK 3 T11: -0.0055 T22: 0.0164 REMARK 3 T33: -0.0056 T12: 0.0199 REMARK 3 T13: 0.0168 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8027 L22: 0.6768 REMARK 3 L33: 2.2978 L12: -0.6433 REMARK 3 L13: -1.2812 L23: 0.6286 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0682 S13: 0.0093 REMARK 3 S21: 0.0409 S22: -0.0463 S23: 0.0009 REMARK 3 S31: 0.0805 S32: 0.1308 S33: 0.0325 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|28 - 40} REMARK 3 ORIGIN FOR THE GROUP (A): 26.1127 -14.7519 -0.5598 REMARK 3 T TENSOR REMARK 3 T11: -0.0022 T22: 0.0130 REMARK 3 T33: 0.0129 T12: 0.0069 REMARK 3 T13: 0.0342 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.4964 L22: 1.1465 REMARK 3 L33: 1.2399 L12: 0.8619 REMARK 3 L13: -0.8461 L23: 0.0688 REMARK 3 S TENSOR REMARK 3 S11: 0.1679 S12: -0.0665 S13: 0.1651 REMARK 3 S21: 0.0972 S22: -0.0465 S23: 0.1335 REMARK 3 S31: -0.1358 S32: -0.1314 S33: -0.1214 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|41 - 46} REMARK 3 ORIGIN FOR THE GROUP (A): 27.3911 -16.0879 1.4225 REMARK 3 T TENSOR REMARK 3 T11: -0.0027 T22: 0.0296 REMARK 3 T33: 0.0068 T12: -0.0173 REMARK 3 T13: 0.0232 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.7873 L22: 0.9924 REMARK 3 L33: 6.3466 L12: 0.5299 REMARK 3 L13: -2.5347 L23: -0.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.2332 S12: -0.0660 S13: 0.0728 REMARK 3 S21: 0.0910 S22: -0.0485 S23: 0.0471 REMARK 3 S31: -0.1357 S32: 0.0070 S33: -0.1847 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|47 - 68} REMARK 3 ORIGIN FOR THE GROUP (A): 22.6067 -25.3918 -9.5621 REMARK 3 T TENSOR REMARK 3 T11: -0.0248 T22: 0.0345 REMARK 3 T33: 0.0031 T12: -0.0114 REMARK 3 T13: -0.0081 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 1.5462 L22: 0.1097 REMARK 3 L33: 1.1245 L12: -0.2297 REMARK 3 L13: -0.2640 L23: -0.7350 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: 0.0433 S13: -0.0065 REMARK 3 S21: -0.0631 S22: 0.0420 S23: -0.0337 REMARK 3 S31: 0.0703 S32: -0.1250 S33: -0.0707 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|69 - 92} REMARK 3 ORIGIN FOR THE GROUP (A): 28.5103 -23.5209 1.8196 REMARK 3 T TENSOR REMARK 3 T11: -0.0325 T22: 0.0454 REMARK 3 T33: -0.0004 T12: -0.0037 REMARK 3 T13: 0.0114 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.9204 L22: 0.0438 REMARK 3 L33: 0.5207 L12: 0.3036 REMARK 3 L13: 0.0127 L23: -0.3298 REMARK 3 S TENSOR REMARK 3 S11: 0.0546 S12: -0.1388 S13: 0.0699 REMARK 3 S21: -0.0319 S22: -0.0080 S23: -0.0036 REMARK 3 S31: 0.0227 S32: -0.0059 S33: -0.0466 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {A|93 - 101} REMARK 3 ORIGIN FOR THE GROUP (A): 41.9590 -27.8707 5.2420 REMARK 3 T TENSOR REMARK 3 T11: -0.0461 T22: 0.0850 REMARK 3 T33: -0.0193 T12: 0.0161 REMARK 3 T13: -0.0011 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 0.7320 L22: 0.4116 REMARK 3 L33: 4.8328 L12: 0.1414 REMARK 3 L13: 0.5803 L23: -1.3888 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: -0.1542 S13: -0.0227 REMARK 3 S21: -0.0210 S22: -0.0995 S23: -0.0990 REMARK 3 S31: -0.1856 S32: 0.1696 S33: 0.1335 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: {A|102 - 114} REMARK 3 ORIGIN FOR THE GROUP (A): 30.6979 -32.8839 3.2260 REMARK 3 T TENSOR REMARK 3 T11: -0.0324 T22: 0.0348 REMARK 3 T33: 0.0130 T12: -0.0008 REMARK 3 T13: 0.0009 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.2942 L22: 0.1556 REMARK 3 L33: 0.9771 L12: -0.3450 REMARK 3 L13: 1.2933 L23: -0.1313 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.1630 S13: -0.1566 REMARK 3 S21: -0.0461 S22: 0.0261 S23: 0.0545 REMARK 3 S31: 0.0688 S32: -0.0113 S33: -0.0377 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: {A|115 - 129} REMARK 3 ORIGIN FOR THE GROUP (A): 39.3250 -39.3741 3.4178 REMARK 3 T TENSOR REMARK 3 T11: -0.0308 T22: 0.0207 REMARK 3 T33: 0.0442 T12: 0.0266 REMARK 3 T13: -0.0080 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 5.2202 L22: 0.3389 REMARK 3 L33: 2.1417 L12: 0.1062 REMARK 3 L13: 3.2714 L23: -1.4719 REMARK 3 S TENSOR REMARK 3 S11: 0.2831 S12: -0.1046 S13: -0.4499 REMARK 3 S21: -0.1737 S22: -0.2008 S23: 0.0811 REMARK 3 S31: 0.1023 S32: 0.0743 S33: -0.0822 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: {B|0 - 5} REMARK 3 ORIGIN FOR THE GROUP (A): 51.1911 -25.8020 -25.1431 REMARK 3 T TENSOR REMARK 3 T11: -0.0046 T22: 0.0033 REMARK 3 T33: 0.0065 T12: 0.0582 REMARK 3 T13: 0.0280 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 1.7021 L22: 3.3780 REMARK 3 L33: 0.9479 L12: -2.4492 REMARK 3 L13: -1.5733 L23: 1.9078 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: 0.0199 S13: -0.0228 REMARK 3 S21: -0.1276 S22: 0.1056 S23: -0.0496 REMARK 3 S31: -0.0633 S32: 0.1099 S33: -0.1377 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53022 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 41.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 2.26800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.15567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.31133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.73350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 137.88917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.57783 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.15567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.31133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 137.88917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.73350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.57783 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -27.57783 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 OD2 REMARK 470 ARG A 13 NE CZ NH1 NH2 REMARK 470 GLN A 64 CD OE1 NE2 REMARK 470 LYS A 123 CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 129 O REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -121.12 62.06 REMARK 500 SER A 93 -0.32 75.12 REMARK 500 GLN A 113 67.90 64.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VHB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 DBREF 7OKG A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7OKG B 0 5 PDB 7OKG 7OKG 0 5 SEQADV 7OKG GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7OKG PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7OKG GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET VHB A 201 45 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET CL A 207 1 HET CL A 208 1 HETNAM VHB 2-CHLORANYL-4-[[4-(1-METHYLPYRAZOL-4-YL)-2- HETNAM 2 VHB OXIDANYLIDENE-1H-QUINOLIN-6-YL]AMINO]PYRIDINE-3- HETNAM 3 VHB CARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VHB C19 H13 CL N6 O FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 CL 2(CL 1-) FORMUL 11 HOH *195(H2 O) HELIX 1 AA1 ARG A 13 ARG A 28 1 16 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 SER A 128 1 15 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 22 ASP A 17 VAL A 18 ASN A 21 ARG A 24 SITE 2 AC1 22 LEU A 25 ARG A 28 MET A 51 ALA A 52 SITE 3 AC1 22 CYS A 53 SER A 54 GLY A 55 TYR A 58 SITE 4 AC1 22 GLN A 113 GLU A 115 CL A 207 HOH A 309 SITE 5 AC1 22 HOH A 310 HOH A 311 HOH A 349 HOH A 391 SITE 6 AC1 22 HOH A 398 HOH A 429 SITE 1 AC2 4 ASP A 63 GLN A 64 ARG A 98 GLU A 99 SITE 1 AC3 3 TYR A 111 HOH A 369 ALA B 5 SITE 1 AC4 2 GLU A 99 SER A 128 SITE 1 AC5 4 ILE A 72 ASN A 73 HOH A 335 TRP B 1 SITE 1 AC6 3 GLN A 42 HOH A 333 HOH A 337 SITE 1 AC7 5 MET A 114 HIS A 116 VAL A 117 VHB A 201 SITE 2 AC7 5 HOH A 349 SITE 1 AC8 1 SER A 70 CRYST1 67.239 67.239 165.467 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014872 0.008587 0.000000 0.00000 SCALE2 0.000000 0.017173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006044 0.00000