HEADER TRANSCRIPTION 17-MAY-21 7OKH TITLE CRYSTAL STRUCTURE OF HUMAN BCL6 BTB DOMAIN IN COMPLEX WITH COMPOUND 8F COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BCL-6,B-CELL LYMPHOMA 5 PROTEIN,BCL-5,PROTEIN LAZ-3,ZINC COMPND 5 FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27,ZINC FINGER PROTEIN 51; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-TRP-VAL-ILE-PRO-ALA; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6, BCL5, LAZ3, ZBTB27, ZNF51; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: AI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET48B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS CANCER, LYMPHOMA, INHIBITOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR G.W.COLLIE,Y.-V.LE BIHAN,R.L.M.VAN MONTFORT REVDAT 3 31-JAN-24 7OKH 1 REMARK REVDAT 2 22-DEC-21 7OKH 1 JRNL REVDAT 1 08-DEC-21 7OKH 0 JRNL AUTH M.G.LLOYD,R.HUCKVALE,K.J.CHEUNG,M.J.RODRIGUES,G.W.COLLIE, JRNL AUTH 2 O.A.PIERRAT,M.GATTI IOU,M.CARTER,O.A.DAVIS,P.C.MCANDREW, JRNL AUTH 3 E.GUNNELL,Y.V.LE BIHAN,R.TALBOT,A.T.HENLEY,L.D.JOHNSON, JRNL AUTH 4 A.HAYES,M.D.BRIGHT,F.I.RAYNAUD,M.MENICONI,R.BURKE, JRNL AUTH 5 R.L.M.VAN MONTFORT,O.W.ROSSANESE,B.R.BELLENIE,S.HOELDER JRNL TITL INTO DEEP WATER: OPTIMIZING BCL6 INHIBITORS BY GROWING INTO JRNL TITL 2 A SOLVATED POCKET. JRNL REF J.MED.CHEM. V. 64 17079 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34846884 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00946 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 707 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2411 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 679 REMARK 3 BIN R VALUE (WORKING SET) : 0.2415 REMARK 3 BIN FREE R VALUE : 0.2334 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 28 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08930 REMARK 3 B22 (A**2) : -1.08930 REMARK 3 B33 (A**2) : 2.17870 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.068 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.065 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.061 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.059 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1258 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1708 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 459 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 239 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1258 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 163 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 31 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1755 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.29 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.07 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|6 - A|28 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.1790 -28.2101 13.4533 REMARK 3 T TENSOR REMARK 3 T11: -0.0008 T22: -0.0207 REMARK 3 T33: -0.0311 T12: -0.0130 REMARK 3 T13: 0.0027 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 3.5619 L22: 1.2913 REMARK 3 L33: 5.2759 L12: 0.7715 REMARK 3 L13: 2.5943 L23: 1.3274 REMARK 3 S TENSOR REMARK 3 S11: 0.1215 S12: -0.0618 S13: -0.1908 REMARK 3 S21: 0.1502 S22: -0.0309 S23: 0.0050 REMARK 3 S31: 0.3240 S32: -0.2266 S33: -0.0906 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|29 - A|40 } REMARK 3 ORIGIN FOR THE GROUP (A): 41.2215 -14.2586 27.5944 REMARK 3 T TENSOR REMARK 3 T11: 0.0211 T22: 0.0246 REMARK 3 T33: -0.0145 T12: -0.0244 REMARK 3 T13: -0.0174 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.1030 L22: 1.4410 REMARK 3 L33: 0.0000 L12: 0.5586 REMARK 3 L13: 1.1168 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.1345 S12: -0.0272 S13: 0.0266 REMARK 3 S21: 0.1672 S22: 0.0552 S23: -0.3179 REMARK 3 S31: -0.0243 S32: 0.0936 S33: -0.1897 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|41 - A|46 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.6269 -15.8987 29.0608 REMARK 3 T TENSOR REMARK 3 T11: -0.0014 T22: -0.0262 REMARK 3 T33: -0.0804 T12: -0.0196 REMARK 3 T13: -0.0150 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.8977 L22: 1.0260 REMARK 3 L33: 1.3072 L12: -0.1554 REMARK 3 L13: 1.8576 L23: 0.3453 REMARK 3 S TENSOR REMARK 3 S11: -0.0023 S12: -0.1416 S13: 0.0508 REMARK 3 S21: 0.2886 S22: 0.0499 S23: -0.0492 REMARK 3 S31: -0.0946 S32: 0.1457 S33: -0.0476 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|47 - A|73 } REMARK 3 ORIGIN FOR THE GROUP (A): 35.4461 -6.8884 19.2342 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: -0.0407 REMARK 3 T33: -0.0175 T12: -0.0318 REMARK 3 T13: 0.0303 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.8584 L22: 2.3555 REMARK 3 L33: 1.2452 L12: 1.0505 REMARK 3 L13: -0.2026 L23: 1.4677 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.0633 S13: 0.1398 REMARK 3 S21: -0.2419 S22: 0.0868 S23: -0.0580 REMARK 3 S31: -0.2464 S32: 0.0846 S33: -0.1235 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|74 - A|79 } REMARK 3 ORIGIN FOR THE GROUP (A): 31.3095 -6.2023 35.6452 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: -0.0500 REMARK 3 T33: -0.0407 T12: -0.0629 REMARK 3 T13: 0.0530 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: -1.2528 L22: 1.4662 REMARK 3 L33: 1.6824 L12: 0.8990 REMARK 3 L13: 0.6805 L23: -0.3138 REMARK 3 S TENSOR REMARK 3 S11: 0.1075 S12: -0.1360 S13: 0.0372 REMARK 3 S21: 0.1081 S22: -0.0451 S23: -0.0730 REMARK 3 S31: -0.1200 S32: -0.0607 S33: -0.0624 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|80 - A|92 } REMARK 3 ORIGIN FOR THE GROUP (A): 29.6190 -18.6852 28.4947 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: -0.0325 REMARK 3 T33: -0.0387 T12: -0.0358 REMARK 3 T13: 0.0102 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.3370 L22: 3.4131 REMARK 3 L33: 2.2620 L12: 1.3753 REMARK 3 L13: 0.1009 L23: 2.5736 REMARK 3 S TENSOR REMARK 3 S11: 0.1341 S12: -0.1689 S13: -0.0450 REMARK 3 S21: 0.4421 S22: -0.0582 S23: -0.0488 REMARK 3 S31: 0.1833 S32: 0.0404 S33: -0.0759 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|93 - A|101 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.9797 -22.9510 32.9587 REMARK 3 T TENSOR REMARK 3 T11: 0.0666 T22: -0.0047 REMARK 3 T33: -0.0203 T12: -0.0673 REMARK 3 T13: 0.0394 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.2917 L22: 2.2047 REMARK 3 L33: 0.3043 L12: 1.6863 REMARK 3 L13: -0.0784 L23: -1.6734 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: -0.2169 S13: -0.0856 REMARK 3 S21: 0.2859 S22: -0.1834 S23: 0.1410 REMARK 3 S31: 0.1486 S32: 0.1392 S33: 0.0982 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|102 - A|114 } REMARK 3 ORIGIN FOR THE GROUP (A): 23.3519 -10.4451 30.7937 REMARK 3 T TENSOR REMARK 3 T11: -0.0076 T22: -0.0545 REMARK 3 T33: -0.0270 T12: -0.0351 REMARK 3 T13: 0.0494 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 3.3050 L22: 4.2738 REMARK 3 L33: 3.6120 L12: 2.5702 REMARK 3 L13: -2.0351 L23: -1.8372 REMARK 3 S TENSOR REMARK 3 S11: 0.2048 S12: -0.1398 S13: 0.2947 REMARK 3 S21: 0.2942 S22: -0.1549 S23: 0.3188 REMARK 3 S31: -0.1278 S32: -0.2596 S33: -0.0499 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|115 - A|129 } REMARK 3 ORIGIN FOR THE GROUP (A): 13.5692 -15.0130 30.7449 REMARK 3 T TENSOR REMARK 3 T11: -0.0132 T22: 0.0042 REMARK 3 T33: 0.0774 T12: -0.0436 REMARK 3 T13: 0.0510 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 7.1241 L22: 9.0456 REMARK 3 L33: 0.0000 L12: 0.8209 REMARK 3 L13: -1.0528 L23: -1.1816 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: 0.3210 S13: 0.2635 REMARK 3 S21: 0.1426 S22: -0.0428 S23: 0.6321 REMARK 3 S31: 0.0695 S32: -0.0989 S33: 0.1972 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|0 - B|5 } REMARK 3 ORIGIN FOR THE GROUP (A): 19.2778 -32.4765 2.1275 REMARK 3 T TENSOR REMARK 3 T11: -0.0575 T22: 0.0722 REMARK 3 T33: -0.0147 T12: -0.0339 REMARK 3 T13: -0.0099 T23: -0.0425 REMARK 3 L TENSOR REMARK 3 L11: 2.5578 L22: 2.6803 REMARK 3 L33: 0.0648 L12: 2.9113 REMARK 3 L13: 0.1028 L23: 2.1023 REMARK 3 S TENSOR REMARK 3 S11: 0.0841 S12: -0.0150 S13: -0.0137 REMARK 3 S21: -0.0044 S22: -0.0431 S23: -0.0020 REMARK 3 S31: 0.0035 S32: 0.0136 S33: -0.0410 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.996 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 41.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.19700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.40 REMARK 200 R MERGE FOR SHELL (I) : 2.80100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER OF THE BCL6-BTB/WVIP REMARK 280 COMPLEX AT 4 MG/ML PLUS 1 MICROLITER OF A CRYSTALLISATION REMARK 280 SOLUTION CONSISTING OF 1 M K2HPO4, 0.7 M NAH2PO4, 75 MM SODIUM REMARK 280 ACETATE BUFFER PH 4.5 AND 2 % DMSO, AGAINST 350 MICROLITER OF REMARK 280 CRYSTALLISATION SOLUTION., PH 7, VAPOR DIFFUSION, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.20467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.40933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 82.80700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 138.01167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.60233 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.20467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 110.40933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 138.01167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 82.80700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 27.60233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 33.78950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -58.52513 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 27.60233 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 481 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 6 N CA CB CG OD1 OD2 REMARK 470 GLU A 77 OE2 REMARK 470 GLU A 115 CD OE1 OE2 REMARK 470 LYS A 123 CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 GLU A 129 O REMARK 470 ALA B 0 N CB REMARK 470 ALA B 5 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -126.09 62.03 REMARK 500 ARG A 40 -3.46 76.50 REMARK 500 SER A 93 -3.25 76.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VHK A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 7OKH A 5 129 UNP P41182 BCL6_HUMAN 5 129 DBREF 7OKH B 0 5 PDB 7OKH 7OKH 0 5 SEQADV 7OKH GLY A 2 UNP P41182 EXPRESSION TAG SEQADV 7OKH PRO A 3 UNP P41182 EXPRESSION TAG SEQADV 7OKH GLY A 4 UNP P41182 EXPRESSION TAG SEQRES 1 A 128 GLY PRO GLY ALA ASP SER CYS ILE GLN PHE THR ARG HIS SEQRES 2 A 128 ALA SER ASP VAL LEU LEU ASN LEU ASN ARG LEU ARG SER SEQRES 3 A 128 ARG ASP ILE LEU THR ASP VAL VAL ILE VAL VAL SER ARG SEQRES 4 A 128 GLU GLN PHE ARG ALA HIS LYS THR VAL LEU MET ALA CYS SEQRES 5 A 128 SER GLY LEU PHE TYR SER ILE PHE THR ASP GLN LEU LYS SEQRES 6 A 128 CYS ASN LEU SER VAL ILE ASN LEU ASP PRO GLU ILE ASN SEQRES 7 A 128 PRO GLU GLY PHE CYS ILE LEU LEU ASP PHE MET TYR THR SEQRES 8 A 128 SER ARG LEU ASN LEU ARG GLU GLY ASN ILE MET ALA VAL SEQRES 9 A 128 MET ALA THR ALA MET TYR LEU GLN MET GLU HIS VAL VAL SEQRES 10 A 128 ASP THR CYS ARG LYS PHE ILE LYS ALA SER GLU SEQRES 1 B 6 ALA TRP VAL ILE PRO ALA HET VHK A 201 24 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 8 HET CL A 207 1 HET EDO B 101 4 HETNAM VHK 2-CHLORANYL-4-[[4-(ETHYLAMINO)-2-OXIDANYLIDENE-1H- HETNAM 2 VHK QUINOLIN-6-YL]AMINO]PYRIDINE-3-CARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VHK C17 H14 CL N5 O FORMUL 4 EDO 6(C2 H6 O2) FORMUL 9 CL CL 1- FORMUL 11 HOH *199(H2 O) HELIX 1 AA1 ARG A 13 ASP A 29 1 17 HELIX 2 AA2 HIS A 46 SER A 54 1 9 HELIX 3 AA3 SER A 54 ASP A 63 1 10 HELIX 4 AA4 LEU A 65 LEU A 69 5 5 HELIX 5 AA5 ASN A 79 SER A 93 1 15 HELIX 6 AA6 ASN A 101 GLN A 113 1 13 HELIX 7 AA7 MET A 114 SER A 128 1 15 SHEET 1 AA1 2 GLN A 10 PHE A 11 0 SHEET 2 AA1 2 TRP B 1 VAL B 2 -1 O VAL B 2 N GLN A 10 SHEET 1 AA2 3 GLU A 41 ALA A 45 0 SHEET 2 AA2 3 VAL A 34 VAL A 38 -1 N ILE A 36 O PHE A 43 SHEET 3 AA2 3 VAL A 71 ASN A 73 1 O ILE A 72 N VAL A 37 SITE 1 AC1 15 ASN A 21 ARG A 24 LEU A 25 ARG A 28 SITE 2 AC1 15 MET A 51 ALA A 52 CYS A 53 GLY A 55 SITE 3 AC1 15 TYR A 58 GLN A 113 MET A 114 GLU A 115 SITE 4 AC1 15 EDO A 206 HOH A 396 HOH A 429 SITE 1 AC2 4 ASP A 63 GLN A 64 ARG A 98 GLU A 99 SITE 1 AC3 2 HOH A 381 ALA B 5 SITE 1 AC4 4 LEU A 65 GLU A 99 SER A 128 HOH A 356 SITE 1 AC5 2 GLN A 42 HOH A 333 SITE 1 AC6 7 ASP A 17 LEU A 20 ASN A 21 ARG A 24 SITE 2 AC6 7 VHK A 201 HOH A 339 HOH A 397 SITE 1 AC7 1 HIS A 116 SITE 1 AC8 5 ILE A 72 ASN A 73 HOH A 384 TRP B 1 SITE 2 AC8 5 VAL B 2 CRYST1 67.579 67.579 165.614 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014797 0.008543 0.000000 0.00000 SCALE2 0.000000 0.017087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006038 0.00000