HEADER TRANSFERASE 20-MAY-21 7OLX TITLE MERTK KINASE DOMAIN WITH TYPE 1.5 INHIBITOR CONTAINING A TRI-METHYL TITLE 2 PYRAZOLE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (571-864); COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK, MER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TYROSINE KINASE INHIBITOR, STRUCTURE-BASED DRUG DESIGN, TYPE 1.5 KEYWDS 2 INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PFLUG,M.SCHIMPL,W.MCCOULL,J.W.M.NISSINK,J.WINTER-HOLT REVDAT 4 31-JAN-24 7OLX 1 REMARK REVDAT 3 06-OCT-21 7OLX 1 JRNL REVDAT 2 29-SEP-21 7OLX 1 JRNL REVDAT 1 15-SEP-21 7OLX 0 JRNL AUTH W.MCCOULL,S.BOYD,M.R.BROWN,M.COEN,O.COLLINGWOOD,N.L.DAVIES, JRNL AUTH 2 A.DOHERTY,G.FAIRLEY,K.GOLDBERG,E.HARDAKER,G.HE,E.J.HENNESSY, JRNL AUTH 3 P.HOPCROFT,G.HODGSON,A.JACKSON,X.JIANG,A.KARMOKAR,A.L.LAINE, JRNL AUTH 4 N.LINDSAY,Y.MAO,R.MARKANDU,L.MCMURRAY,N.MCLEAN,L.MOONEY, JRNL AUTH 5 H.MUSGROVE,J.W.M.NISSINK,A.PFLUG,V.P.REDDY,P.B.RAWLINS, JRNL AUTH 6 E.RIVERS,M.SCHIMPL,G.F.SMITH,S.TENTARELLI,J.TRAVERS, JRNL AUTH 7 R.I.TROUP,J.WALTON,C.WANG,S.WILKINSON,B.WILLIAMSON, JRNL AUTH 8 J.WINTER-HOLT,D.YANG,Y.ZHENG,Q.ZHU,P.D.SMITH JRNL TITL OPTIMIZATION OF AN IMIDAZO[1,2- A ]PYRIDINE SERIES TO AFFORD JRNL TITL 2 HIGHLY SELECTIVE TYPE I1/2 DUAL MER/AXL KINASE INHIBITORS JRNL TITL 3 WITH IN VIVO EFFICACY. JRNL REF J.MED.CHEM. V. 64 13524 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 34478292 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00920 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.6 REMARK 3 NUMBER OF REFLECTIONS : 16622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 67 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 2 REMARK 3 BIN FREE R VALUE : 0.5440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.241 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.235 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2237 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2130 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3034 ; 1.152 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4877 ; 0.884 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 5.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;33.917 ;23.187 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 380 ;13.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.266 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7OLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-21. REMARK 100 THE DEPOSITION ID IS D_1292115994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17475 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 65.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 59.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 1.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3BRB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 4.3 M NACL, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.91100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.91100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.98950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 47.29900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.98950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 47.29900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.91100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.98950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.29900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.91100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.98950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 47.29900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 623 REMARK 465 ASP A 624 REMARK 465 LEU A 744 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 SER A 750 REMARK 465 GLY A 751 REMARK 465 ASP A 752 REMARK 465 TYR A 753 REMARK 465 TYR A 754 REMARK 465 ARG A 755 REMARK 465 GLN A 756 REMARK 465 GLY A 757 REMARK 465 ARG A 758 REMARK 465 ILE A 759 REMARK 465 ALA A 760 REMARK 465 LYS A 761 REMARK 465 MET A 762 REMARK 465 ASP A 863 REMARK 465 VAL A 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 ASP A 579 CG OD1 OD2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 PHE A 598 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 609 CG CD OE1 OE2 REMARK 470 LYS A 622 CG CD CE NZ REMARK 470 ASN A 625 CG OD1 ND2 REMARK 470 GLU A 630 CG CD OE1 OE2 REMARK 470 GLN A 662 CG CD OE1 NE2 REMARK 470 LYS A 666 CG CD CE NZ REMARK 470 ARG A 693 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 774 CG OD1 OD2 REMARK 470 ARG A 775 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 828 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 722 -5.83 78.72 REMARK 500 ASP A 723 47.11 -154.79 REMARK 500 ALA A 773 -73.61 -66.95 REMARK 500 TYR A 801 61.83 61.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VK5 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 905 DBREF 7OLX A 571 864 UNP Q12866 MERTK_HUMAN 571 864 SEQADV 7OLX GLY A 567 UNP Q12866 EXPRESSION TAG SEQADV 7OLX SER A 568 UNP Q12866 EXPRESSION TAG SEQADV 7OLX HIS A 569 UNP Q12866 EXPRESSION TAG SEQADV 7OLX MET A 570 UNP Q12866 EXPRESSION TAG SEQADV 7OLX ARG A 591 UNP Q12866 LYS 591 ENGINEERED MUTATION SEQADV 7OLX ARG A 693 UNP Q12866 LYS 693 ENGINEERED MUTATION SEQADV 7OLX ARG A 702 UNP Q12866 LYS 702 ENGINEERED MUTATION SEQADV 7OLX ARG A 856 UNP Q12866 LYS 856 ENGINEERED MUTATION SEQRES 1 A 298 GLY SER HIS MET GLU GLU LEU GLN ASN LYS LEU GLU ASP SEQRES 2 A 298 VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU GLY ARG ILE SEQRES 3 A 298 LEU GLY GLU GLY GLU PHE GLY SER VAL MET GLU GLY ASN SEQRES 4 A 298 LEU LYS GLN GLU ASP GLY THR SER LEU LYS VAL ALA VAL SEQRES 5 A 298 LYS THR MET LYS LEU ASP ASN SER SER GLN ARG GLU ILE SEQRES 6 A 298 GLU GLU PHE LEU SER GLU ALA ALA CYS MET LYS ASP PHE SEQRES 7 A 298 SER HIS PRO ASN VAL ILE ARG LEU LEU GLY VAL CYS ILE SEQRES 8 A 298 GLU MET SER SER GLN GLY ILE PRO LYS PRO MET VAL ILE SEQRES 9 A 298 LEU PRO PHE MET LYS TYR GLY ASP LEU HIS THR TYR LEU SEQRES 10 A 298 LEU TYR SER ARG LEU GLU THR GLY PRO ARG HIS ILE PRO SEQRES 11 A 298 LEU GLN THR LEU LEU ARG PHE MET VAL ASP ILE ALA LEU SEQRES 12 A 298 GLY MET GLU TYR LEU SER ASN ARG ASN PHE LEU HIS ARG SEQRES 13 A 298 ASP LEU ALA ALA ARG ASN CYS MET LEU ARG ASP ASP MET SEQRES 14 A 298 THR VAL CYS VAL ALA ASP PHE GLY LEU SER LYS LYS ILE SEQRES 15 A 298 TYR SER GLY ASP TYR TYR ARG GLN GLY ARG ILE ALA LYS SEQRES 16 A 298 MET PRO VAL LYS TRP ILE ALA ILE GLU SER LEU ALA ASP SEQRES 17 A 298 ARG VAL TYR THR SER LYS SER ASP VAL TRP ALA PHE GLY SEQRES 18 A 298 VAL THR MET TRP GLU ILE ALA THR ARG GLY MET THR PRO SEQRES 19 A 298 TYR PRO GLY VAL GLN ASN HIS GLU MET TYR ASP TYR LEU SEQRES 20 A 298 LEU HIS GLY HIS ARG LEU LYS GLN PRO GLU ASP CYS LEU SEQRES 21 A 298 ASP GLU LEU TYR GLU ILE MET TYR SER CYS TRP ARG THR SEQRES 22 A 298 ASP PRO LEU ASP ARG PRO THR PHE SER VAL LEU ARG LEU SEQRES 23 A 298 GLN LEU GLU ARG LEU LEU GLU SER LEU PRO ASP VAL HET VK5 A 901 42 HET CL A 902 1 HET CL A 903 1 HET CL A 904 1 HET CL A 905 1 HETNAM VK5 ~{N}-[[3-[4-[(DIMETHYLAMINO)METHYL]PHENYL]IMIDAZO[1,2- HETNAM 2 VK5 A]PYRIDIN-6-YL]METHYL]-~{N}-METHYL-5-[3-METHYL-5-(1,3, HETNAM 3 VK5 5-TRIMETHYLPYRAZOL-4-YL)PYRIDIN-2-YL]-1,3,4-OXADIAZOL- HETNAM 4 VK5 2-AMINE HETNAM CL CHLORIDE ION FORMUL 2 VK5 C32 H35 N9 O FORMUL 3 CL 4(CL 1-) FORMUL 7 HOH *66(H2 O) HELIX 1 AA1 GLY A 567 VAL A 581 1 15 HELIX 2 AA2 ASP A 583 ASN A 585 5 3 HELIX 3 AA3 SER A 627 ASP A 643 1 17 HELIX 4 AA4 ASP A 678 SER A 686 1 9 HELIX 5 AA5 PRO A 696 ARG A 717 1 22 HELIX 6 AA6 ALA A 725 ARG A 727 5 3 HELIX 7 AA7 PRO A 763 ILE A 767 5 5 HELIX 8 AA8 ALA A 768 ASP A 774 1 7 HELIX 9 AA9 THR A 778 THR A 795 1 18 HELIX 10 AB1 GLN A 805 HIS A 807 5 3 HELIX 11 AB2 GLU A 808 HIS A 815 1 8 HELIX 12 AB3 LEU A 826 CYS A 836 1 11 HELIX 13 AB4 ASP A 840 ARG A 844 5 5 HELIX 14 AB5 THR A 846 SER A 860 1 15 SHEET 1 AA1 5 LEU A 587 GLU A 595 0 SHEET 2 AA1 5 GLY A 599 LYS A 607 -1 O VAL A 601 N GLY A 594 SHEET 3 AA1 5 SER A 613 MET A 621 -1 O VAL A 618 N MET A 602 SHEET 4 AA1 5 PRO A 665 PRO A 672 -1 O VAL A 669 N LYS A 619 SHEET 5 AA1 5 GLY A 654 MET A 659 -1 N GLU A 658 O LYS A 666 SHEET 1 AA2 2 CYS A 729 LEU A 731 0 SHEET 2 AA2 2 VAL A 737 VAL A 739 -1 O CYS A 738 N MET A 730 SITE 1 AC1 15 LEU A 593 ALA A 617 LYS A 619 PHE A 634 SITE 2 AC1 15 ALA A 638 MET A 641 ILE A 650 LEU A 671 SITE 3 AC1 15 PRO A 672 PHE A 673 MET A 674 MET A 730 SITE 4 AC1 15 ALA A 740 ASP A 741 PHE A 742 SITE 1 AC2 2 PRO A 802 LYS A 820 SITE 1 AC3 3 ARG A 687 MET A 798 HOH A1030 SITE 1 AC4 2 ARG A 651 ARG A 732 SITE 1 AC5 1 ASP A 733 CRYST1 91.979 94.598 71.822 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010872 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013923 0.00000 TER 2147 PRO A 862 HETATM 2148 C1 VK5 A 901 32.814 17.256 13.683 1.00 82.43 C HETATM 2149 C2 VK5 A 901 30.772 16.274 12.821 1.00 77.38 C HETATM 2150 C3 VK5 A 901 29.538 16.580 13.635 1.00 70.75 C HETATM 2151 N6 VK5 A 901 25.374 6.359 27.962 1.00 57.51 N HETATM 2152 C7 VK5 A 901 27.961 18.162 14.557 1.00 65.23 C HETATM 2153 C8 VK5 A 901 29.094 17.885 13.809 1.00 67.51 C HETATM 2154 C9 VK5 A 901 26.025 17.400 15.959 1.00 51.96 C HETATM 2155 C10 VK5 A 901 24.848 18.017 15.620 1.00 49.25 C HETATM 2156 C11 VK5 A 901 24.598 17.471 17.681 1.00 47.07 C HETATM 2157 C12 VK5 A 901 24.188 17.224 19.017 1.00 45.61 C HETATM 2158 C13 VK5 A 901 25.039 16.587 19.863 1.00 46.68 C HETATM 2159 C14 VK5 A 901 26.352 16.154 19.436 1.00 46.49 C HETATM 2160 C15 VK5 A 901 27.328 15.444 20.340 1.00 48.10 C HETATM 2161 C16 VK5 A 901 26.782 13.082 19.772 1.00 46.39 C HETATM 2162 C19 VK5 A 901 25.468 11.727 24.556 1.00 43.59 C HETATM 2163 C20 VK5 A 901 25.809 9.462 24.890 1.00 48.73 C HETATM 2164 C21 VK5 A 901 25.020 9.444 26.033 1.00 49.89 C HETATM 2165 C22 VK5 A 901 24.438 10.641 26.435 1.00 47.37 C HETATM 2166 C24 VK5 A 901 23.987 13.081 26.196 1.00 44.60 C HETATM 2167 C27 VK5 A 901 27.327 7.566 27.146 1.00 56.80 C HETATM 2168 C30 VK5 A 901 22.213 7.975 27.039 1.00 53.85 C HETATM 2169 C31 VK5 A 901 26.724 16.397 18.164 1.00 46.25 C HETATM 2170 C29 VK5 A 901 23.637 7.587 27.241 1.00 53.48 C HETATM 2171 N7 VK5 A 901 24.027 6.495 27.916 1.00 55.18 N HETATM 2172 C28 VK5 A 901 23.195 5.496 28.569 1.00 55.76 C HETATM 2173 C26 VK5 A 901 25.852 7.392 27.298 1.00 56.35 C HETATM 2174 C25 VK5 A 901 24.789 8.207 26.817 1.00 53.93 C HETATM 2175 N5 VK5 A 901 26.034 10.569 24.164 1.00 47.86 N HETATM 2176 C23 VK5 A 901 24.641 11.812 25.717 1.00 45.56 C HETATM 2177 C18 VK5 A 901 25.763 12.896 23.708 1.00 43.83 C HETATM 2178 O VK5 A 901 26.166 12.714 22.410 1.00 42.43 O HETATM 2179 N3 VK5 A 901 25.692 14.143 24.035 1.00 45.54 N HETATM 2180 N4 VK5 A 901 26.065 14.868 22.906 1.00 43.83 N HETATM 2181 C17 VK5 A 901 26.332 13.988 21.986 1.00 43.55 C HETATM 2182 N2 VK5 A 901 26.729 14.174 20.734 1.00 46.95 N HETATM 2183 N8 VK5 A 901 25.866 17.044 17.296 1.00 48.97 N HETATM 2184 N1 VK5 A 901 23.968 18.065 16.668 1.00 48.05 N HETATM 2185 C6 VK5 A 901 27.237 17.131 15.155 1.00 58.95 C HETATM 2186 C5 VK5 A 901 27.683 15.823 14.980 1.00 65.74 C HETATM 2187 C4 VK5 A 901 28.816 15.557 14.231 1.00 69.15 C HETATM 2188 N VK5 A 901 31.971 16.057 13.645 1.00 81.02 N HETATM 2189 C VK5 A 901 32.749 14.911 13.170 1.00 81.60 C HETATM 2190 CL CL A 902 51.176 24.092 28.748 1.00 52.48 CL HETATM 2191 CL CL A 903 45.865 25.100 17.846 0.50 44.72 CL HETATM 2192 CL CL A 904 19.720 20.881 24.718 1.00 72.86 CL HETATM 2193 CL CL A 905 19.540 24.477 19.315 1.00 75.56 CL HETATM 2194 O HOH A1001 54.724 34.022 24.131 1.00 52.36 O HETATM 2195 O HOH A1002 19.151 10.445 38.068 1.00 73.60 O HETATM 2196 O HOH A1003 29.944 25.495 46.741 1.00 52.80 O HETATM 2197 O HOH A1004 20.718 23.826 15.610 1.00 47.63 O HETATM 2198 O HOH A1005 31.567 23.660 15.781 1.00 51.91 O HETATM 2199 O HOH A1006 37.703 19.796 17.086 1.00 47.41 O HETATM 2200 O HOH A1007 46.869 17.709 19.045 1.00 49.53 O HETATM 2201 O HOH A1008 38.276 19.097 23.566 1.00 42.52 O HETATM 2202 O HOH A1009 39.326 29.702 42.174 1.00 57.85 O HETATM 2203 O HOH A1010 45.421 17.505 32.921 1.00 40.07 O HETATM 2204 O HOH A1011 42.131 21.202 22.799 1.00 39.17 O HETATM 2205 O HOH A1012 22.460 18.389 8.670 1.00 66.04 O HETATM 2206 O HOH A1013 38.638 33.550 18.060 1.00 48.14 O HETATM 2207 O HOH A1014 37.976 14.634 29.258 1.00 61.35 O HETATM 2208 O HOH A1015 46.233 14.945 32.951 1.00 54.45 O HETATM 2209 O HOH A1016 53.749 22.719 27.643 1.00 54.70 O HETATM 2210 O HOH A1017 23.550 25.083 17.075 1.00 53.17 O HETATM 2211 O HOH A1018 43.919 21.351 18.927 1.00 44.42 O HETATM 2212 O HOH A1019 46.637 21.144 46.708 1.00 73.32 O HETATM 2213 O HOH A1020 32.908 12.469 22.784 1.00 63.52 O HETATM 2214 O HOH A1021 49.160 22.279 21.579 1.00 44.06 O HETATM 2215 O HOH A1022 20.888 14.593 29.087 1.00 52.64 O HETATM 2216 O HOH A1023 18.787 19.917 30.088 1.00 57.22 O HETATM 2217 O HOH A1024 6.839 18.895 10.487 1.00 54.29 O HETATM 2218 O HOH A1025 24.626 25.186 43.219 1.00 58.05 O HETATM 2219 O HOH A1026 30.239 16.521 21.544 1.00 72.78 O HETATM 2220 O HOH A1027 51.114 9.353 31.830 1.00 62.27 O HETATM 2221 O HOH A1028 38.508 24.105 48.558 1.00 66.09 O HETATM 2222 O HOH A1029 23.812 25.997 38.031 1.00 62.78 O HETATM 2223 O HOH A1030 47.318 22.724 19.475 1.00 41.46 O HETATM 2224 O HOH A1031 30.231 16.751 38.757 1.00 53.91 O HETATM 2225 O HOH A1032 14.361 8.024 48.781 1.00 68.20 O HETATM 2226 O HOH A1033 26.315 17.424 45.916 1.00 72.09 O HETATM 2227 O HOH A1034 51.344 23.113 41.165 1.00 70.36 O HETATM 2228 O HOH A1035 34.883 25.675 47.080 1.00 52.22 O HETATM 2229 O HOH A1036 9.831 13.129 9.564 1.00 37.61 O HETATM 2230 O HOH A1037 29.738 16.160 8.904 1.00 72.09 O HETATM 2231 O HOH A1038 25.475 9.689 4.607 1.00 60.96 O HETATM 2232 O HOH A1039 29.120 23.082 42.968 1.00 51.63 O HETATM 2233 O HOH A1040 35.680 41.409 25.060 1.00 58.71 O HETATM 2234 O HOH A1041 52.708 19.158 21.011 1.00 51.68 O HETATM 2235 O HOH A1042 52.719 30.148 33.050 1.00 51.05 O HETATM 2236 O HOH A1043 45.134 13.232 25.957 1.00 50.15 O HETATM 2237 O HOH A1044 14.687 5.588 9.351 1.00 62.16 O HETATM 2238 O HOH A1045 31.156 20.928 42.723 1.00 32.37 O HETATM 2239 O HOH A1046 13.315 0.979 46.813 1.00 57.49 O HETATM 2240 O HOH A1047 13.645 21.320 13.382 1.00 48.38 O HETATM 2241 O HOH A1048 45.345 26.435 47.742 1.00 79.56 O HETATM 2242 O HOH A1049 50.364 11.552 22.876 1.00 78.37 O HETATM 2243 O HOH A1050 21.909 11.800 44.321 1.00 63.62 O HETATM 2244 O HOH A1051 53.012 16.468 22.173 1.00 65.15 O HETATM 2245 O HOH A1052 42.745 18.839 21.631 1.00 49.07 O HETATM 2246 O HOH A1053 38.403 41.108 23.257 1.00 69.11 O HETATM 2247 O HOH A1054 48.647 22.574 44.893 1.00 67.15 O HETATM 2248 O HOH A1055 27.523 9.646 37.731 1.00 72.76 O HETATM 2249 O HOH A1056 53.853 25.217 35.527 1.00 58.34 O HETATM 2250 O HOH A1057 5.962 4.837 35.069 1.00 70.48 O HETATM 2251 O HOH A1058 39.951 18.111 21.217 1.00 62.04 O HETATM 2252 O HOH A1059 18.496 27.721 21.321 1.00 68.32 O HETATM 2253 O HOH A1060 30.540 26.393 12.894 1.00 65.74 O HETATM 2254 O HOH A1061 15.691 21.912 15.834 1.00 69.21 O HETATM 2255 O HOH A1062 25.783 26.752 10.507 1.00 65.85 O HETATM 2256 O HOH A1063 29.798 14.107 17.821 1.00 52.64 O HETATM 2257 O HOH A1064 30.105 16.781 18.243 1.00 58.63 O HETATM 2258 O HOH A1065 50.042 19.987 20.868 1.00 46.05 O HETATM 2259 O HOH A1066 31.328 27.794 10.390 1.00 78.10 O CONECT 2148 2188 CONECT 2149 2150 2188 CONECT 2150 2149 2153 2187 CONECT 2151 2171 2173 CONECT 2152 2153 2185 CONECT 2153 2150 2152 CONECT 2154 2155 2183 2185 CONECT 2155 2154 2184 CONECT 2156 2157 2183 2184 CONECT 2157 2156 2158 CONECT 2158 2157 2159 CONECT 2159 2158 2160 2169 CONECT 2160 2159 2182 CONECT 2161 2182 CONECT 2162 2175 2176 2177 CONECT 2163 2164 2175 CONECT 2164 2163 2165 2174 CONECT 2165 2164 2176 CONECT 2166 2176 CONECT 2167 2173 CONECT 2168 2170 CONECT 2169 2159 2183 CONECT 2170 2168 2171 2174 CONECT 2171 2151 2170 2172 CONECT 2172 2171 CONECT 2173 2151 2167 2174 CONECT 2174 2164 2170 2173 CONECT 2175 2162 2163 CONECT 2176 2162 2165 2166 CONECT 2177 2162 2178 2179 CONECT 2178 2177 2181 CONECT 2179 2177 2180 CONECT 2180 2179 2181 CONECT 2181 2178 2180 2182 CONECT 2182 2160 2161 2181 CONECT 2183 2154 2156 2169 CONECT 2184 2155 2156 CONECT 2185 2152 2154 2186 CONECT 2186 2185 2187 CONECT 2187 2150 2186 CONECT 2188 2148 2149 2189 CONECT 2189 2188 MASTER 349 0 5 14 7 0 8 6 2258 1 42 23 END