HEADER EXOCYTOSIS 01-JUN-21 7OPP TITLE CRYSTAL STRUCTURE OF THE RAB27A FUSION WITH SLP2A-RBDA1 EFFECTOR FOR TITLE 2 SF4 POCKET DRUG TARGETING COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOTAGMIN-LIKE PROTEIN 2,RAS-RELATED PROTEIN RAB-27A; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: BREAST CANCER-ASSOCIATED ANTIGEN SGA-72M,EXOPHILIN-4,RAB-27, COMPND 5 GTP-BINDING PROTEIN RAM; COMPND 6 EC: 3.6.5.2; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYTL2, KIAA1597, SGA72M, SLP2, SLP2A, RAB27A, RAB27; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS RAB27, GTPASE, SLP2A, EXOSOME, EXOCYTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR M.JAMSHIDIHA,M.TERSA,T.LANYON-HOGG,I.PEREZ-DORADO,C.L.SUTHERELL,E.DE AUTHOR 2 VITA,R.M.L.MORGAN,E.W.TATE,E.COTA REVDAT 2 31-JAN-24 7OPP 1 REMARK REVDAT 1 06-APR-22 7OPP 0 JRNL AUTH M.JAMSHIDIHA,T.LANYON-HOGG,C.L.SUTHERELL,G.B.CRAVEN,M.TERSA, JRNL AUTH 2 E.DE VITA,D.BRUSTUR,I.PEREZ-DORADO,S.HASSAN,R.PETRACCA, JRNL AUTH 3 R.M.MORGAN,M.SANZ-HERNANDEZ,J.C.NORMAN,A.ARMSTRONG,D.J.MANN, JRNL AUTH 4 E.COTA,E.W.TATE JRNL TITL IDENTIFICATION OF THE FIRST STRUCTURALLY VALIDATED COVALENT JRNL TITL 2 LIGANDS OF THE SMALL GTPASE RAB27A. JRNL REF RSC MED CHEM V. 13 150 2022 JRNL REFN ESSN 2632-8682 JRNL PMID 35308027 JRNL DOI 10.1039/D1MD00225B REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40484 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.5900 - 4.4400 1.00 2775 165 0.1450 0.1687 REMARK 3 2 4.4400 - 3.8800 1.00 2813 117 0.1296 0.1632 REMARK 3 3 3.8800 - 3.5200 1.00 2729 158 0.1411 0.1724 REMARK 3 4 3.5200 - 3.2700 1.00 2764 133 0.1582 0.2021 REMARK 3 5 3.2700 - 3.0800 1.00 2754 112 0.1711 0.2097 REMARK 3 6 3.0800 - 2.9200 1.00 2760 136 0.1739 0.2072 REMARK 3 7 2.9200 - 2.8000 1.00 2698 140 0.1909 0.2772 REMARK 3 8 2.8000 - 2.6900 1.00 2783 120 0.1823 0.2500 REMARK 3 9 2.6900 - 2.6000 1.00 2716 148 0.1671 0.2143 REMARK 3 10 2.6000 - 2.5100 1.00 2709 138 0.1666 0.2093 REMARK 3 11 2.5100 - 2.4400 1.00 2716 146 0.1858 0.2574 REMARK 3 12 2.4400 - 2.3800 1.00 2719 137 0.2026 0.2744 REMARK 3 13 2.3800 - 2.3200 1.00 2666 167 0.2179 0.2782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.227 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3510 REMARK 3 ANGLE : 0.870 4751 REMARK 3 CHIRALITY : 0.049 522 REMARK 3 PLANARITY : 0.005 605 REMARK 3 DIHEDRAL : 22.950 478 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID -37 THROUGH -31 OR REMARK 3 (RESID -30 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID -29 REMARK 3 THROUGH -24 OR (RESID -23 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID -22 THROUGH -9 OR RESID -7 OR REMARK 3 RESID 6 THROUGH 34 OR RESID 36 THROUGH 56 REMARK 3 OR RESID 65 THROUGH 89 OR RESID 91 REMARK 3 THROUGH 103 OR RESID 105 THROUGH 110 OR REMARK 3 RESID 112 THROUGH 115 OR RESID 117 OR REMARK 3 RESID 119 THROUGH 145 OR (RESID 146 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 147 THROUGH 152 OR REMARK 3 (RESID 153 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 154 REMARK 3 THROUGH 183 OR (RESID 184 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 185 THROUGH 188)) REMARK 3 SELECTION : (CHAIN 'C' AND (RESID -37 THROUGH -9 OR REMARK 3 RESID 5 THROUGH 34 OR RESID 36 THROUGH 56 REMARK 3 OR RESID 65 THROUGH 89 OR RESID 91 REMARK 3 THROUGH 103 OR RESID 105 THROUGH 110 OR REMARK 3 RESID 112 THROUGH 115 OR RESID 117 OR REMARK 3 RESID 119 THROUGH 186 OR (RESID 187 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 188)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'D' REMARK 3 SELECTION : CHAIN 'E' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7OPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUN-21. REMARK 100 THE DEPOSITION ID IS D_1292108837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40486 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 58.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02731 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.24010 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BC1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE, 0.1 M SODIUM CITRATE, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.55667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 77.11333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 77.11333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.55667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 60 REMARK 465 ALA A 61 REMARK 465 THR A 62 REMARK 465 GLY A 63 REMARK 465 ARG A 64 REMARK 465 VAL A 189 REMARK 465 ASP A 190 REMARK 465 LYS A 191 REMARK 465 SER A 192 REMARK 465 ARG C -8 REMARK 465 ASP C -7 REMARK 465 GLY C -6 REMARK 465 SER C -5 REMARK 465 GLY C -4 REMARK 465 SER C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 GLY C 0 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 ASP C 3 REMARK 465 GLY C 57 REMARK 465 PRO C 58 REMARK 465 ASP C 59 REMARK 465 GLY C 60 REMARK 465 ALA C 61 REMARK 465 VAL C 189 REMARK 465 ASP C 190 REMARK 465 LYS C 191 REMARK 465 SER C 192 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -10 CG CD OE1 OE2 REMARK 470 GLU A -9 CG CD OE1 OE2 REMARK 470 ARG A -8 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 GLU A 186 CG CD OE1 OE2 REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 GLU C -30 CG CD OE1 OE2 REMARK 470 LYS C -23 CG CD CE NZ REMARK 470 GLU C -10 CG CD OE1 OE2 REMARK 470 GLU C -9 CG CD OE1 OE2 REMARK 470 GLU C 124 CG CD OE1 OE2 REMARK 470 GLU C 146 CG CD OE1 OE2 REMARK 470 GLU C 153 CG CD OE1 OE2 REMARK 470 ARG C 184 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 186 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A -9 -74.35 -81.14 REMARK 500 ARG A -8 78.82 -107.16 REMARK 500 ALA A 55 109.82 -53.44 REMARK 500 ASN A 125 70.48 48.94 REMARK 500 LYS A 134 38.29 70.48 REMARK 500 LEU A 137 71.40 -103.30 REMARK 500 LYS C 134 40.50 70.87 REMARK 500 LEU C 137 74.08 -102.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 494 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A 495 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH C 487 DISTANCE = 9.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 23 OG1 REMARK 620 2 THR A 41 OG1 85.9 REMARK 620 3 GNP A 201 O3G 175.8 94.6 REMARK 620 4 GNP A 201 O2B 91.1 174.1 88.0 REMARK 620 5 HOH A 323 O 86.7 85.4 89.2 89.3 REMARK 620 6 HOH A 325 O 91.9 95.7 92.2 89.6 178.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR C 23 OG1 REMARK 620 2 THR C 41 OG1 82.9 REMARK 620 3 GNP C 201 O3G 172.6 91.7 REMARK 620 4 GNP C 201 O2B 91.3 173.8 93.8 REMARK 620 5 HOH C 313 O 85.2 86.0 89.4 91.2 REMARK 620 6 HOH C 335 O 92.1 93.0 93.2 89.6 177.2 REMARK 620 N 1 2 3 4 5 DBREF 7OPP A -35 -8 UNP Q9HCH5 SYTL2_HUMAN 5 32 DBREF 7OPP A 1 192 UNP P51159 RB27A_HUMAN 1 192 DBREF 7OPP C -35 -8 UNP Q9HCH5 SYTL2_HUMAN 5 32 DBREF 7OPP C 1 192 UNP P51159 RB27A_HUMAN 1 192 SEQADV 7OPP HIS A -37 UNP Q9HCH5 EXPRESSION TAG SEQADV 7OPP MET A -36 UNP Q9HCH5 EXPRESSION TAG SEQADV 7OPP ASP A -7 UNP Q9HCH5 LINKER SEQADV 7OPP GLY A -6 UNP Q9HCH5 LINKER SEQADV 7OPP SER A -5 UNP Q9HCH5 LINKER SEQADV 7OPP GLY A -4 UNP Q9HCH5 LINKER SEQADV 7OPP SER A -3 UNP Q9HCH5 LINKER SEQADV 7OPP GLY A -2 UNP Q9HCH5 LINKER SEQADV 7OPP SER A -1 UNP Q9HCH5 LINKER SEQADV 7OPP GLY A 0 UNP Q9HCH5 LINKER SEQADV 7OPP LEU A 78 UNP P51159 GLN 78 ENGINEERED MUTATION SEQADV 7OPP SER A 123 UNP P51159 CYS 123 ENGINEERED MUTATION SEQADV 7OPP SER A 188 UNP P51159 CYS 188 ENGINEERED MUTATION SEQADV 7OPP HIS C -37 UNP Q9HCH5 EXPRESSION TAG SEQADV 7OPP MET C -36 UNP Q9HCH5 EXPRESSION TAG SEQADV 7OPP ASP C -7 UNP Q9HCH5 LINKER SEQADV 7OPP GLY C -6 UNP Q9HCH5 LINKER SEQADV 7OPP SER C -5 UNP Q9HCH5 LINKER SEQADV 7OPP GLY C -4 UNP Q9HCH5 LINKER SEQADV 7OPP SER C -3 UNP Q9HCH5 LINKER SEQADV 7OPP GLY C -2 UNP Q9HCH5 LINKER SEQADV 7OPP SER C -1 UNP Q9HCH5 LINKER SEQADV 7OPP GLY C 0 UNP Q9HCH5 LINKER SEQADV 7OPP LEU C 78 UNP P51159 GLN 78 ENGINEERED MUTATION SEQADV 7OPP SER C 123 UNP P51159 CYS 123 ENGINEERED MUTATION SEQADV 7OPP SER C 188 UNP P51159 CYS 188 ENGINEERED MUTATION SEQRES 1 A 230 HIS MET SER PHE LEU THR GLU GLU GLU GLN GLU ALA ILE SEQRES 2 A 230 MET LYS VAL LEU GLN ARG ASP ALA ALA LEU LYS ARG ALA SEQRES 3 A 230 GLU GLU GLU ARG ASP GLY SER GLY SER GLY SER GLY MET SEQRES 4 A 230 SER ASP GLY ASP TYR ASP TYR LEU ILE LYS PHE LEU ALA SEQRES 5 A 230 LEU GLY ASP SER GLY VAL GLY LYS THR SER VAL LEU TYR SEQRES 6 A 230 GLN TYR THR ASP GLY LYS PHE ASN SER LYS PHE ILE THR SEQRES 7 A 230 THR VAL GLY ILE ASP PHE ARG GLU LYS ARG VAL VAL TYR SEQRES 8 A 230 ARG ALA SER GLY PRO ASP GLY ALA THR GLY ARG GLY GLN SEQRES 9 A 230 ARG ILE HIS LEU GLN LEU TRP ASP THR ALA GLY LEU GLU SEQRES 10 A 230 ARG PHE ARG SER LEU THR THR ALA PHE PHE ARG ASP ALA SEQRES 11 A 230 MET GLY PHE LEU LEU LEU PHE ASP LEU THR ASN GLU GLN SEQRES 12 A 230 SER PHE LEU ASN VAL ARG ASN TRP ILE SER GLN LEU GLN SEQRES 13 A 230 MET HIS ALA TYR SER GLU ASN PRO ASP ILE VAL LEU CYS SEQRES 14 A 230 GLY ASN LYS SER ASP LEU GLU ASP GLN ARG VAL VAL LYS SEQRES 15 A 230 GLU GLU GLU ALA ILE ALA LEU ALA GLU LYS TYR GLY ILE SEQRES 16 A 230 PRO TYR PHE GLU THR SER ALA ALA ASN GLY THR ASN ILE SEQRES 17 A 230 SER GLN ALA ILE GLU MET LEU LEU ASP LEU ILE MET LYS SEQRES 18 A 230 ARG MET GLU ARG SER VAL ASP LYS SER SEQRES 1 C 230 HIS MET SER PHE LEU THR GLU GLU GLU GLN GLU ALA ILE SEQRES 2 C 230 MET LYS VAL LEU GLN ARG ASP ALA ALA LEU LYS ARG ALA SEQRES 3 C 230 GLU GLU GLU ARG ASP GLY SER GLY SER GLY SER GLY MET SEQRES 4 C 230 SER ASP GLY ASP TYR ASP TYR LEU ILE LYS PHE LEU ALA SEQRES 5 C 230 LEU GLY ASP SER GLY VAL GLY LYS THR SER VAL LEU TYR SEQRES 6 C 230 GLN TYR THR ASP GLY LYS PHE ASN SER LYS PHE ILE THR SEQRES 7 C 230 THR VAL GLY ILE ASP PHE ARG GLU LYS ARG VAL VAL TYR SEQRES 8 C 230 ARG ALA SER GLY PRO ASP GLY ALA THR GLY ARG GLY GLN SEQRES 9 C 230 ARG ILE HIS LEU GLN LEU TRP ASP THR ALA GLY LEU GLU SEQRES 10 C 230 ARG PHE ARG SER LEU THR THR ALA PHE PHE ARG ASP ALA SEQRES 11 C 230 MET GLY PHE LEU LEU LEU PHE ASP LEU THR ASN GLU GLN SEQRES 12 C 230 SER PHE LEU ASN VAL ARG ASN TRP ILE SER GLN LEU GLN SEQRES 13 C 230 MET HIS ALA TYR SER GLU ASN PRO ASP ILE VAL LEU CYS SEQRES 14 C 230 GLY ASN LYS SER ASP LEU GLU ASP GLN ARG VAL VAL LYS SEQRES 15 C 230 GLU GLU GLU ALA ILE ALA LEU ALA GLU LYS TYR GLY ILE SEQRES 16 C 230 PRO TYR PHE GLU THR SER ALA ALA ASN GLY THR ASN ILE SEQRES 17 C 230 SER GLN ALA ILE GLU MET LEU LEU ASP LEU ILE MET LYS SEQRES 18 C 230 ARG MET GLU ARG SER VAL ASP LYS SER HET GNP A 201 32 HET MG A 202 1 HET GNP C 201 32 HET MG C 202 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 3 GNP 2(C10 H17 N6 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *382(H2 O) HELIX 1 AA1 THR A -32 ARG A -8 1 25 HELIX 2 AA2 GLY A 21 GLY A 32 1 12 HELIX 3 AA3 LEU A 78 ARG A 80 5 3 HELIX 4 AA4 PHE A 81 ALA A 87 1 7 HELIX 5 AA5 PHE A 88 ALA A 92 5 5 HELIX 6 AA6 ASN A 103 ASN A 109 1 7 HELIX 7 AA7 ASN A 109 ALA A 121 1 13 HELIX 8 AA8 LEU A 137 ARG A 141 5 5 HELIX 9 AA9 LYS A 144 GLY A 156 1 13 HELIX 10 AB1 ASN A 169 ARG A 187 1 19 HELIX 11 AB2 GLU C -31 GLU C -9 1 23 HELIX 12 AB3 GLY C 21 GLY C 32 1 12 HELIX 13 AB4 LEU C 78 ARG C 80 5 3 HELIX 14 AB5 PHE C 81 ALA C 87 1 7 HELIX 15 AB6 PHE C 88 ALA C 92 5 5 HELIX 16 AB7 ASN C 103 ASN C 109 1 7 HELIX 17 AB8 ASN C 109 ALA C 121 1 13 HELIX 18 AB9 LYS C 144 GLY C 156 1 13 HELIX 19 AC1 ASN C 169 ARG C 187 1 19 SHEET 1 AA1 2 MET A -36 LEU A -33 0 SHEET 2 AA1 2 SER C -35 THR C -32 -1 O LEU C -33 N SER A -35 SHEET 1 AA2 6 ILE A 44 TYR A 53 0 SHEET 2 AA2 6 GLN A 66 THR A 75 -1 O ASP A 74 N ASP A 45 SHEET 3 AA2 6 TYR A 8 LEU A 15 1 N PHE A 12 O TRP A 73 SHEET 4 AA2 6 PHE A 95 ASP A 100 1 O LEU A 98 N LEU A 15 SHEET 5 AA2 6 ILE A 128 ASN A 133 1 O CYS A 131 N LEU A 97 SHEET 6 AA2 6 TYR A 159 GLU A 161 1 O PHE A 160 N GLY A 132 SHEET 1 AA3 6 ILE C 44 ARG C 54 0 SHEET 2 AA3 6 GLY C 65 THR C 75 -1 O ILE C 68 N VAL C 51 SHEET 3 AA3 6 TYR C 8 LEU C 15 1 N PHE C 12 O TRP C 73 SHEET 4 AA3 6 PHE C 95 ASP C 100 1 O LEU C 98 N LEU C 15 SHEET 5 AA3 6 ILE C 128 ASN C 133 1 O ASN C 133 N PHE C 99 SHEET 6 AA3 6 TYR C 159 GLU C 161 1 O PHE C 160 N GLY C 132 LINK OG1 THR A 23 MG MG A 202 1555 1555 2.03 LINK OG1 THR A 41 MG MG A 202 1555 1555 1.95 LINK O3G GNP A 201 MG MG A 202 1555 1555 1.98 LINK O2B GNP A 201 MG MG A 202 1555 1555 2.11 LINK MG MG A 202 O HOH A 323 1555 1555 2.15 LINK MG MG A 202 O HOH A 325 1555 1555 2.05 LINK OG1 THR C 23 MG MG C 202 1555 1555 2.08 LINK OG1 THR C 41 MG MG C 202 1555 1555 2.06 LINK O3G GNP C 201 MG MG C 202 1555 1555 2.01 LINK O2B GNP C 201 MG MG C 202 1555 1555 2.02 LINK MG MG C 202 O HOH C 313 1555 1555 2.10 LINK MG MG C 202 O HOH C 335 1555 1555 2.12 CRYST1 117.710 117.710 115.670 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008495 0.004905 0.000000 0.00000 SCALE2 0.000000 0.009810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008645 0.00000